Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03250

Experiment: NL-CCM; low oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03249 and MPMX19_03250 are separated by 241 nucleotidesMPMX19_03250 and MPMX19_03251 are separated by 266 nucleotides MPMX19_03249: MPMX19_03249 - Carnitine monooxygenase oxygenase subunit, at 589,409 to 590,644 _03249 MPMX19_03250: MPMX19_03250 - Glycine cleavage system transcriptional activator, at 590,886 to 591,812 _03250 MPMX19_03251: MPMX19_03251 - hypothetical protein, at 592,079 to 592,546 _03251 Position (kb) 590 591 592Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 590.040 kb on + strand, within MPMX19_03249at 590.040 kb on + strand, within MPMX19_03249at 590.040 kb on + strand, within MPMX19_03249at 590.041 kb on - strand, within MPMX19_03249at 590.041 kb on - strand, within MPMX19_03249at 590.041 kb on - strand, within MPMX19_03249at 590.041 kb on - strand, within MPMX19_03249at 590.041 kb on - strand, within MPMX19_03249at 590.041 kb on - strand, within MPMX19_03249at 590.041 kb on - strand, within MPMX19_03249at 590.041 kb on - strand, within MPMX19_03249at 590.142 kb on + strand, within MPMX19_03249at 590.142 kb on + strand, within MPMX19_03249at 590.143 kb on - strand, within MPMX19_03249at 590.202 kb on + strand, within MPMX19_03249at 590.202 kb on + strand, within MPMX19_03249at 590.202 kb on + strand, within MPMX19_03249at 590.202 kb on + strand, within MPMX19_03249at 590.202 kb on + strand, within MPMX19_03249at 590.202 kb on + strand, within MPMX19_03249at 590.202 kb on + strand, within MPMX19_03249at 590.202 kb on + strand, within MPMX19_03249at 590.203 kb on - strand, within MPMX19_03249at 590.203 kb on - strand, within MPMX19_03249at 590.203 kb on - strand, within MPMX19_03249at 590.203 kb on - strand, within MPMX19_03249at 590.310 kb on + strand, within MPMX19_03249at 590.310 kb on + strand, within MPMX19_03249at 590.310 kb on + strand, within MPMX19_03249at 590.310 kb on + strand, within MPMX19_03249at 590.310 kb on + strand, within MPMX19_03249at 590.310 kb on + strand, within MPMX19_03249at 590.310 kb on + strand, within MPMX19_03249at 590.310 kb on + strand, within MPMX19_03249at 590.310 kb on + strand, within MPMX19_03249at 590.311 kb on - strand, within MPMX19_03249at 590.311 kb on - strand, within MPMX19_03249at 590.311 kb on - strand, within MPMX19_03249at 590.311 kb on - strand, within MPMX19_03249at 590.311 kb on - strand, within MPMX19_03249at 590.526 kb on + strandat 590.526 kb on + strandat 590.526 kb on + strandat 590.527 kb on - strandat 590.527 kb on - strandat 590.571 kb on + strandat 590.571 kb on + strandat 590.571 kb on + strandat 590.571 kb on + strandat 590.571 kb on + strandat 590.571 kb on + strandat 590.571 kb on + strandat 590.571 kb on + strandat 590.572 kb on - strandat 590.572 kb on - strandat 590.572 kb on - strandat 590.572 kb on - strandat 590.592 kb on + strandat 590.592 kb on + strandat 590.592 kb on + strandat 590.593 kb on - strandat 590.827 kb on + strandat 590.827 kb on + strandat 590.828 kb on - strandat 590.998 kb on + strand, within MPMX19_03250at 590.998 kb on + strand, within MPMX19_03250at 591.307 kb on + strand, within MPMX19_03250at 591.307 kb on + strand, within MPMX19_03250at 591.307 kb on + strand, within MPMX19_03250at 591.307 kb on + strand, within MPMX19_03250at 591.307 kb on + strand, within MPMX19_03250at 591.308 kb on - strand, within MPMX19_03250at 591.308 kb on - strand, within MPMX19_03250at 591.308 kb on - strand, within MPMX19_03250at 591.308 kb on - strand, within MPMX19_03250at 591.591 kb on - strand, within MPMX19_03250at 591.595 kb on + strand, within MPMX19_03250at 591.595 kb on + strand, within MPMX19_03250at 591.595 kb on + strand, within MPMX19_03250at 591.595 kb on + strand, within MPMX19_03250at 591.596 kb on - strand, within MPMX19_03250at 591.596 kb on - strand, within MPMX19_03250at 591.596 kb on - strand, within MPMX19_03250at 591.596 kb on - strand, within MPMX19_03250at 591.596 kb on - strand, within MPMX19_03250at 591.596 kb on - strand, within MPMX19_03250at 591.596 kb on - strand, within MPMX19_03250at 591.911 kb on + strandat 591.911 kb on + strandat 591.981 kb on + strandat 591.982 kb on - strandat 591.982 kb on - strandat 591.982 kb on - strandat 591.982 kb on - strandat 592.090 kb on + strandat 592.090 kb on + strandat 592.090 kb on + strandat 592.091 kb on - strandat 592.190 kb on + strand, within MPMX19_03251at 592.190 kb on + strand, within MPMX19_03251at 592.190 kb on + strand, within MPMX19_03251at 592.190 kb on + strand, within MPMX19_03251at 592.190 kb on + strand, within MPMX19_03251at 592.190 kb on + strand, within MPMX19_03251at 592.191 kb on - strand, within MPMX19_03251at 592.191 kb on - strand, within MPMX19_03251at 592.191 kb on - strand, within MPMX19_03251at 592.295 kb on + strand, within MPMX19_03251at 592.295 kb on + strand, within MPMX19_03251at 592.295 kb on + strand, within MPMX19_03251at 592.296 kb on - strand, within MPMX19_03251at 592.792 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; low oxygen
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590,040 + MPMX19_03249 0.51 -1.2
590,040 + MPMX19_03249 0.51 +0.0
590,040 + MPMX19_03249 0.51 -0.8
590,041 - MPMX19_03249 0.51 -0.9
590,041 - MPMX19_03249 0.51 +0.2
590,041 - MPMX19_03249 0.51 -0.4
590,041 - MPMX19_03249 0.51 +1.6
590,041 - MPMX19_03249 0.51 -1.9
590,041 - MPMX19_03249 0.51 -0.9
590,041 - MPMX19_03249 0.51 -0.2
590,041 - MPMX19_03249 0.51 +1.9
590,142 + MPMX19_03249 0.59 -1.2
590,142 + MPMX19_03249 0.59 -0.1
590,143 - MPMX19_03249 0.59 -0.6
590,202 + MPMX19_03249 0.64 -0.1
590,202 + MPMX19_03249 0.64 +0.4
590,202 + MPMX19_03249 0.64 +1.6
590,202 + MPMX19_03249 0.64 -0.4
590,202 + MPMX19_03249 0.64 -0.5
590,202 + MPMX19_03249 0.64 +0.9
590,202 + MPMX19_03249 0.64 -0.8
590,202 + MPMX19_03249 0.64 -0.1
590,203 - MPMX19_03249 0.64 -1.2
590,203 - MPMX19_03249 0.64 +0.0
590,203 - MPMX19_03249 0.64 -0.1
590,203 - MPMX19_03249 0.64 -1.0
590,310 + MPMX19_03249 0.73 -0.3
590,310 + MPMX19_03249 0.73 -0.4
590,310 + MPMX19_03249 0.73 -1.6
590,310 + MPMX19_03249 0.73 +0.4
590,310 + MPMX19_03249 0.73 +0.6
590,310 + MPMX19_03249 0.73 -0.8
590,310 + MPMX19_03249 0.73 -2.2
590,310 + MPMX19_03249 0.73 -0.4
590,310 + MPMX19_03249 0.73 -0.3
590,311 - MPMX19_03249 0.73 +0.0
590,311 - MPMX19_03249 0.73 -0.5
590,311 - MPMX19_03249 0.73 -0.6
590,311 - MPMX19_03249 0.73 +0.0
590,311 - MPMX19_03249 0.73 +0.7
590,526 + -0.2
590,526 + +0.4
590,526 + -1.0
590,527 - +0.1
590,527 - +1.6
590,571 + -0.5
590,571 + +0.7
590,571 + -0.6
590,571 + +0.4
590,571 + -1.3
590,571 + -0.7
590,571 + -1.6
590,571 + +0.6
590,572 - +0.0
590,572 - +0.6
590,572 - +0.3
590,572 - +0.0
590,592 + -2.4
590,592 + +0.1
590,592 + -0.9
590,593 - -0.7
590,827 + -0.1
590,827 + +0.4
590,828 - +0.3
590,998 + MPMX19_03250 0.12 -0.6
590,998 + MPMX19_03250 0.12 -0.5
591,307 + MPMX19_03250 0.45 +0.3
591,307 + MPMX19_03250 0.45 +0.0
591,307 + MPMX19_03250 0.45 -1.7
591,307 + MPMX19_03250 0.45 -0.1
591,307 + MPMX19_03250 0.45 -0.5
591,308 - MPMX19_03250 0.46 -0.6
591,308 - MPMX19_03250 0.46 +0.6
591,308 - MPMX19_03250 0.46 -0.5
591,308 - MPMX19_03250 0.46 +1.4
591,591 - MPMX19_03250 0.76 +0.1
591,595 + MPMX19_03250 0.76 +0.1
591,595 + MPMX19_03250 0.76 -1.1
591,595 + MPMX19_03250 0.76 +0.6
591,595 + MPMX19_03250 0.76 +0.6
591,596 - MPMX19_03250 0.77 +0.3
591,596 - MPMX19_03250 0.77 -0.9
591,596 - MPMX19_03250 0.77 +0.4
591,596 - MPMX19_03250 0.77 +0.0
591,596 - MPMX19_03250 0.77 -0.4
591,596 - MPMX19_03250 0.77 +1.0
591,596 - MPMX19_03250 0.77 +0.4
591,911 + -1.7
591,911 + -0.7
591,981 + -1.1
591,982 - -2.1
591,982 - -0.1
591,982 - -2.4
591,982 - -2.2
592,090 + -0.7
592,090 + -1.0
592,090 + +0.6
592,091 - +1.0
592,190 + MPMX19_03251 0.24 -1.5
592,190 + MPMX19_03251 0.24 -0.7
592,190 + MPMX19_03251 0.24 -1.3
592,190 + MPMX19_03251 0.24 -1.4
592,190 + MPMX19_03251 0.24 -1.8
592,190 + MPMX19_03251 0.24 -1.7
592,191 - MPMX19_03251 0.24 +0.4
592,191 - MPMX19_03251 0.24 -1.5
592,191 - MPMX19_03251 0.24 -0.9
592,295 + MPMX19_03251 0.46 -0.6
592,295 + MPMX19_03251 0.46 -0.6
592,295 + MPMX19_03251 0.46 +0.1
592,296 - MPMX19_03251 0.46 -0.9
592,792 - -2.9

Or see this region's nucleotide sequence