Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02989

Experiment: NL-CCM; low oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02987 and MPMX19_02988 overlap by 8 nucleotidesMPMX19_02988 and MPMX19_02989 are separated by 221 nucleotidesMPMX19_02989 and MPMX19_02990 are separated by 112 nucleotides MPMX19_02987: MPMX19_02987 - hypothetical protein, at 249,606 to 249,875 _02987 MPMX19_02988: MPMX19_02988 - hypothetical protein, at 249,868 to 250,362 _02988 MPMX19_02989: MPMX19_02989 - Riboflavin transport system permease protein RibX, at 250,584 to 251,393 _02989 MPMX19_02990: MPMX19_02990 - hypothetical protein, at 251,506 to 252,522 _02990 Position (kb) 250 251 252Strain fitness (log2 ratio) -3 -2 -1 0 1at 249.585 kb on + strandat 249.840 kb on + strand, within MPMX19_02987at 249.840 kb on + strand, within MPMX19_02987at 249.840 kb on + strand, within MPMX19_02987at 249.840 kb on + strand, within MPMX19_02987at 249.841 kb on - strand, within MPMX19_02987at 249.841 kb on - strand, within MPMX19_02987at 250.231 kb on + strand, within MPMX19_02988at 250.231 kb on + strand, within MPMX19_02988at 250.231 kb on + strand, within MPMX19_02988at 250.231 kb on + strand, within MPMX19_02988at 250.231 kb on + strand, within MPMX19_02988at 250.231 kb on + strand, within MPMX19_02988at 250.231 kb on + strand, within MPMX19_02988at 250.232 kb on - strand, within MPMX19_02988at 250.232 kb on - strand, within MPMX19_02988at 250.232 kb on - strand, within MPMX19_02988at 250.232 kb on - strand, within MPMX19_02988at 250.318 kb on + strandat 250.318 kb on + strandat 250.318 kb on + strandat 250.318 kb on + strandat 250.319 kb on - strandat 250.319 kb on - strandat 250.319 kb on - strandat 250.319 kb on - strandat 250.319 kb on - strandat 250.319 kb on - strandat 250.320 kb on + strandat 250.320 kb on + strandat 250.320 kb on + strandat 250.320 kb on + strandat 250.320 kb on + strandat 250.320 kb on + strandat 250.320 kb on + strandat 250.320 kb on + strandat 250.321 kb on - strandat 250.321 kb on - strandat 250.321 kb on - strandat 250.321 kb on - strandat 250.321 kb on - strandat 250.321 kb on - strandat 250.713 kb on + strand, within MPMX19_02989at 250.713 kb on + strand, within MPMX19_02989at 250.713 kb on + strand, within MPMX19_02989at 250.713 kb on + strand, within MPMX19_02989at 250.713 kb on + strand, within MPMX19_02989at 250.713 kb on + strand, within MPMX19_02989at 250.714 kb on - strand, within MPMX19_02989at 250.714 kb on - strand, within MPMX19_02989at 250.884 kb on + strand, within MPMX19_02989at 250.884 kb on + strand, within MPMX19_02989at 250.884 kb on + strand, within MPMX19_02989at 250.884 kb on + strand, within MPMX19_02989at 250.884 kb on + strand, within MPMX19_02989at 250.884 kb on + strand, within MPMX19_02989at 250.884 kb on + strand, within MPMX19_02989at 250.884 kb on + strand, within MPMX19_02989at 250.884 kb on + strand, within MPMX19_02989at 250.884 kb on + strand, within MPMX19_02989at 250.884 kb on + strand, within MPMX19_02989at 250.884 kb on + strand, within MPMX19_02989at 250.884 kb on + strand, within MPMX19_02989at 250.884 kb on + strand, within MPMX19_02989at 250.884 kb on + strand, within MPMX19_02989at 250.884 kb on + strand, within MPMX19_02989at 250.885 kb on - strand, within MPMX19_02989at 250.885 kb on - strand, within MPMX19_02989at 250.885 kb on - strand, within MPMX19_02989at 250.885 kb on - strand, within MPMX19_02989at 250.885 kb on - strand, within MPMX19_02989at 250.885 kb on - strand, within MPMX19_02989at 250.885 kb on - strand, within MPMX19_02989at 250.885 kb on - strand, within MPMX19_02989at 250.885 kb on - strand, within MPMX19_02989at 250.885 kb on - strand, within MPMX19_02989at 250.885 kb on - strand, within MPMX19_02989at 250.885 kb on - strand, within MPMX19_02989at 250.885 kb on - strand, within MPMX19_02989at 251.341 kb on - strandat 251.412 kb on - strandat 251.599 kb on + strandat 251.599 kb on + strandat 251.599 kb on + strandat 251.599 kb on + strandat 251.600 kb on - strandat 251.600 kb on - strandat 251.600 kb on - strandat 251.600 kb on - strandat 251.600 kb on - strandat 251.600 kb on - strandat 251.605 kb on + strandat 251.605 kb on + strandat 251.605 kb on + strandat 251.606 kb on - strandat 251.606 kb on - strandat 251.606 kb on - strandat 251.626 kb on + strand, within MPMX19_02990at 251.626 kb on + strand, within MPMX19_02990at 251.626 kb on + strand, within MPMX19_02990at 251.626 kb on + strand, within MPMX19_02990at 251.627 kb on - strand, within MPMX19_02990at 251.627 kb on - strand, within MPMX19_02990at 251.627 kb on - strand, within MPMX19_02990at 251.627 kb on - strand, within MPMX19_02990at 251.627 kb on - strand, within MPMX19_02990at 251.627 kb on - strand, within MPMX19_02990at 251.627 kb on - strand, within MPMX19_02990at 251.627 kb on - strand, within MPMX19_02990at 251.629 kb on + strand, within MPMX19_02990at 251.650 kb on + strand, within MPMX19_02990at 251.650 kb on + strand, within MPMX19_02990at 251.651 kb on - strand, within MPMX19_02990at 251.743 kb on + strand, within MPMX19_02990at 251.743 kb on + strand, within MPMX19_02990at 251.744 kb on - strand, within MPMX19_02990at 251.744 kb on - strand, within MPMX19_02990at 251.744 kb on - strand, within MPMX19_02990at 251.744 kb on - strand, within MPMX19_02990at 252.032 kb on + strand, within MPMX19_02990at 252.032 kb on + strand, within MPMX19_02990at 252.032 kb on + strand, within MPMX19_02990at 252.043 kb on + strand, within MPMX19_02990at 252.043 kb on + strand, within MPMX19_02990at 252.043 kb on + strand, within MPMX19_02990at 252.044 kb on - strand, within MPMX19_02990at 252.044 kb on - strand, within MPMX19_02990at 252.044 kb on - strand, within MPMX19_02990at 252.044 kb on - strand, within MPMX19_02990at 252.044 kb on - strand, within MPMX19_02990at 252.044 kb on - strand, within MPMX19_02990at 252.044 kb on - strand, within MPMX19_02990at 252.116 kb on - strand, within MPMX19_02990at 252.331 kb on + strand, within MPMX19_02990at 252.331 kb on + strand, within MPMX19_02990at 252.332 kb on - strand, within MPMX19_02990

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; low oxygen
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249,585 + -0.7
249,840 + MPMX19_02987 0.87 -0.2
249,840 + MPMX19_02987 0.87 -0.5
249,840 + MPMX19_02987 0.87 -2.1
249,840 + MPMX19_02987 0.87 +0.0
249,841 - MPMX19_02987 0.87 +0.2
249,841 - MPMX19_02987 0.87 -1.2
250,231 + MPMX19_02988 0.73 -0.6
250,231 + MPMX19_02988 0.73 -1.7
250,231 + MPMX19_02988 0.73 +0.0
250,231 + MPMX19_02988 0.73 -0.4
250,231 + MPMX19_02988 0.73 -1.8
250,231 + MPMX19_02988 0.73 -0.8
250,231 + MPMX19_02988 0.73 -0.3
250,232 - MPMX19_02988 0.74 -0.8
250,232 - MPMX19_02988 0.74 +0.8
250,232 - MPMX19_02988 0.74 +0.3
250,232 - MPMX19_02988 0.74 -1.1
250,318 + -2.0
250,318 + -2.8
250,318 + -1.0
250,318 + -0.1
250,319 - +0.0
250,319 - +0.5
250,319 - -0.7
250,319 - -0.5
250,319 - -1.3
250,319 - +0.0
250,320 + -0.5
250,320 + -2.0
250,320 + +0.2
250,320 + -2.0
250,320 + -0.7
250,320 + -0.5
250,320 + -0.2
250,320 + -0.6
250,321 - -2.1
250,321 - -0.1
250,321 - -0.6
250,321 - +1.4
250,321 - -0.1
250,321 - -2.7
250,713 + MPMX19_02989 0.16 +0.6
250,713 + MPMX19_02989 0.16 +0.0
250,713 + MPMX19_02989 0.16 -1.2
250,713 + MPMX19_02989 0.16 -0.1
250,713 + MPMX19_02989 0.16 -1.1
250,713 + MPMX19_02989 0.16 -1.1
250,714 - MPMX19_02989 0.16 +0.4
250,714 - MPMX19_02989 0.16 -0.2
250,884 + MPMX19_02989 0.37 -1.2
250,884 + MPMX19_02989 0.37 -0.1
250,884 + MPMX19_02989 0.37 +0.9
250,884 + MPMX19_02989 0.37 +0.6
250,884 + MPMX19_02989 0.37 +0.2
250,884 + MPMX19_02989 0.37 +0.2
250,884 + MPMX19_02989 0.37 -0.0
250,884 + MPMX19_02989 0.37 -0.7
250,884 + MPMX19_02989 0.37 -0.8
250,884 + MPMX19_02989 0.37 +0.2
250,884 + MPMX19_02989 0.37 +0.8
250,884 + MPMX19_02989 0.37 -0.6
250,884 + MPMX19_02989 0.37 -0.4
250,884 + MPMX19_02989 0.37 -0.7
250,884 + MPMX19_02989 0.37 -0.5
250,884 + MPMX19_02989 0.37 -0.8
250,885 - MPMX19_02989 0.37 +0.5
250,885 - MPMX19_02989 0.37 -0.5
250,885 - MPMX19_02989 0.37 +0.0
250,885 - MPMX19_02989 0.37 -0.9
250,885 - MPMX19_02989 0.37 +0.3
250,885 - MPMX19_02989 0.37 -0.1
250,885 - MPMX19_02989 0.37 +1.0
250,885 - MPMX19_02989 0.37 +0.3
250,885 - MPMX19_02989 0.37 -0.4
250,885 - MPMX19_02989 0.37 +0.7
250,885 - MPMX19_02989 0.37 +0.6
250,885 - MPMX19_02989 0.37 -1.7
250,885 - MPMX19_02989 0.37 -0.9
251,341 - +0.2
251,412 - -0.7
251,599 + +0.3
251,599 + -0.5
251,599 + -0.1
251,599 + -0.6
251,600 - -0.2
251,600 - -0.1
251,600 - -0.4
251,600 - -1.0
251,600 - -0.8
251,600 - -0.7
251,605 + +0.6
251,605 + -0.5
251,605 + -1.0
251,606 - -0.2
251,606 - +0.1
251,606 - -1.0
251,626 + MPMX19_02990 0.12 -0.7
251,626 + MPMX19_02990 0.12 +1.0
251,626 + MPMX19_02990 0.12 -0.4
251,626 + MPMX19_02990 0.12 -0.7
251,627 - MPMX19_02990 0.12 -1.5
251,627 - MPMX19_02990 0.12 -0.2
251,627 - MPMX19_02990 0.12 -1.5
251,627 - MPMX19_02990 0.12 +0.0
251,627 - MPMX19_02990 0.12 -0.9
251,627 - MPMX19_02990 0.12 -0.9
251,627 - MPMX19_02990 0.12 -0.3
251,627 - MPMX19_02990 0.12 -0.1
251,629 + MPMX19_02990 0.12 -0.7
251,650 + MPMX19_02990 0.14 -0.2
251,650 + MPMX19_02990 0.14 -0.1
251,651 - MPMX19_02990 0.14 -1.0
251,743 + MPMX19_02990 0.23 +0.8
251,743 + MPMX19_02990 0.23 +0.6
251,744 - MPMX19_02990 0.23 +0.1
251,744 - MPMX19_02990 0.23 -1.4
251,744 - MPMX19_02990 0.23 -0.1
251,744 - MPMX19_02990 0.23 -1.3
252,032 + MPMX19_02990 0.52 -1.0
252,032 + MPMX19_02990 0.52 -2.0
252,032 + MPMX19_02990 0.52 +0.3
252,043 + MPMX19_02990 0.53 +0.0
252,043 + MPMX19_02990 0.53 -0.4
252,043 + MPMX19_02990 0.53 -0.2
252,044 - MPMX19_02990 0.53 -1.2
252,044 - MPMX19_02990 0.53 +1.0
252,044 - MPMX19_02990 0.53 -1.8
252,044 - MPMX19_02990 0.53 +1.2
252,044 - MPMX19_02990 0.53 -1.0
252,044 - MPMX19_02990 0.53 -1.3
252,044 - MPMX19_02990 0.53 -0.6
252,116 - MPMX19_02990 0.60 +0.6
252,331 + MPMX19_02990 0.81 -1.7
252,331 + MPMX19_02990 0.81 +0.8
252,332 - MPMX19_02990 0.81 -3.2

Or see this region's nucleotide sequence