Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02889 and MPMX19_02890 are separated by 47 nucleotides MPMX19_02890 and MPMX19_02891 are separated by 33 nucleotides
MPMX19_02889: MPMX19_02889 - Galactarate dehydratase (L-threo-forming), at 140,685 to 142,208
_02889
MPMX19_02890: MPMX19_02890 - Glucarate dehydratase, at 142,256 to 143,593
_02890
MPMX19_02891: MPMX19_02891 - Mannonate dehydratase, at 143,627 to 144,715
_02891
Position (kb) 142
143
144 Strain fitness (log2 ratio) -2
-1
0
1
2 at 141.343 kb on + strand, within MPMX19_02889 at 141.703 kb on + strand, within MPMX19_02889 at 141.703 kb on + strand, within MPMX19_02889 at 141.703 kb on + strand, within MPMX19_02889 at 141.703 kb on + strand, within MPMX19_02889 at 141.703 kb on + strand, within MPMX19_02889 at 141.703 kb on + strand, within MPMX19_02889 at 141.704 kb on - strand, within MPMX19_02889 at 141.704 kb on - strand, within MPMX19_02889 at 141.704 kb on - strand, within MPMX19_02889 at 141.704 kb on - strand, within MPMX19_02889 at 141.704 kb on - strand, within MPMX19_02889 at 141.742 kb on + strand, within MPMX19_02889 at 141.878 kb on + strand, within MPMX19_02889 at 141.878 kb on + strand, within MPMX19_02889 at 141.878 kb on + strand, within MPMX19_02889 at 141.878 kb on + strand, within MPMX19_02889 at 141.878 kb on + strand, within MPMX19_02889 at 141.878 kb on + strand, within MPMX19_02889 at 141.878 kb on + strand, within MPMX19_02889 at 141.878 kb on + strand, within MPMX19_02889 at 141.878 kb on + strand, within MPMX19_02889 at 141.878 kb on + strand, within MPMX19_02889 at 141.878 kb on + strand, within MPMX19_02889 at 141.878 kb on + strand, within MPMX19_02889 at 141.878 kb on + strand, within MPMX19_02889 at 141.878 kb on + strand, within MPMX19_02889 at 141.878 kb on + strand, within MPMX19_02889 at 141.878 kb on + strand, within MPMX19_02889 at 141.878 kb on + strand, within MPMX19_02889 at 141.878 kb on + strand, within MPMX19_02889 at 141.878 kb on + strand, within MPMX19_02889 at 141.878 kb on + strand, within MPMX19_02889 at 141.879 kb on - strand, within MPMX19_02889 at 141.879 kb on - strand, within MPMX19_02889 at 141.879 kb on - strand, within MPMX19_02889 at 141.879 kb on - strand, within MPMX19_02889 at 141.879 kb on - strand, within MPMX19_02889 at 141.879 kb on - strand, within MPMX19_02889 at 141.879 kb on - strand, within MPMX19_02889 at 141.879 kb on - strand, within MPMX19_02889 at 141.879 kb on - strand, within MPMX19_02889 at 141.879 kb on - strand, within MPMX19_02889 at 141.879 kb on - strand, within MPMX19_02889 at 141.879 kb on - strand, within MPMX19_02889 at 141.879 kb on - strand, within MPMX19_02889 at 141.879 kb on - strand, within MPMX19_02889 at 141.879 kb on - strand, within MPMX19_02889 at 141.879 kb on - strand, within MPMX19_02889 at 141.879 kb on - strand, within MPMX19_02889 at 141.879 kb on - strand, within MPMX19_02889 at 141.879 kb on - strand, within MPMX19_02889 at 141.880 kb on + strand, within MPMX19_02889 at 141.880 kb on + strand, within MPMX19_02889 at 141.880 kb on + strand, within MPMX19_02889 at 141.933 kb on - strand, within MPMX19_02889 at 141.933 kb on - strand, within MPMX19_02889 at 142.189 kb on + strand at 142.189 kb on + strand at 142.189 kb on + strand at 142.189 kb on + strand at 142.189 kb on + strand at 142.189 kb on + strand at 142.189 kb on + strand at 142.189 kb on + strand at 142.189 kb on + strand at 142.189 kb on + strand at 142.189 kb on + strand at 142.189 kb on + strand at 142.189 kb on + strand at 142.189 kb on + strand at 142.189 kb on + strand at 142.189 kb on + strand at 142.190 kb on - strand at 142.190 kb on - strand at 142.190 kb on - strand at 142.190 kb on - strand at 142.190 kb on - strand at 142.190 kb on - strand at 142.190 kb on - strand at 142.190 kb on - strand at 142.190 kb on - strand at 142.190 kb on - strand at 142.190 kb on - strand at 142.190 kb on - strand at 142.190 kb on - strand at 142.308 kb on + strand at 142.308 kb on + strand at 142.308 kb on + strand at 142.308 kb on + strand at 142.308 kb on + strand at 142.308 kb on + strand at 142.308 kb on + strand at 142.309 kb on - strand at 142.309 kb on - strand at 142.309 kb on - strand at 142.309 kb on - strand at 142.356 kb on + strand at 142.356 kb on + strand at 142.356 kb on + strand at 142.357 kb on - strand at 142.357 kb on - strand at 142.357 kb on - strand at 142.821 kb on + strand, within MPMX19_02890 at 142.821 kb on + strand, within MPMX19_02890 at 142.821 kb on + strand, within MPMX19_02890 at 142.822 kb on - strand, within MPMX19_02890 at 143.136 kb on + strand, within MPMX19_02890 at 143.136 kb on + strand, within MPMX19_02890 at 143.136 kb on + strand, within MPMX19_02890 at 143.136 kb on + strand, within MPMX19_02890 at 143.136 kb on + strand, within MPMX19_02890 at 143.136 kb on + strand, within MPMX19_02890 at 143.136 kb on + strand, within MPMX19_02890 at 143.136 kb on + strand, within MPMX19_02890 at 143.137 kb on - strand, within MPMX19_02890 at 143.137 kb on - strand, within MPMX19_02890 at 143.137 kb on - strand, within MPMX19_02890 at 143.137 kb on - strand, within MPMX19_02890 at 143.137 kb on - strand, within MPMX19_02890 at 143.137 kb on - strand, within MPMX19_02890 at 143.137 kb on - strand, within MPMX19_02890 at 143.137 kb on - strand, within MPMX19_02890 at 143.137 kb on - strand, within MPMX19_02890 at 143.145 kb on + strand, within MPMX19_02890 at 143.145 kb on + strand, within MPMX19_02890 at 143.145 kb on + strand, within MPMX19_02890 at 143.145 kb on + strand, within MPMX19_02890 at 143.146 kb on - strand, within MPMX19_02890 at 143.490 kb on + strand at 143.490 kb on + strand at 143.490 kb on + strand at 143.490 kb on + strand at 143.491 kb on - strand at 143.491 kb on - strand at 143.653 kb on + strand at 143.654 kb on - strand at 143.655 kb on + strand at 143.656 kb on - strand at 143.739 kb on + strand, within MPMX19_02891 at 143.740 kb on - strand, within MPMX19_02891 at 143.820 kb on + strand, within MPMX19_02891 at 143.821 kb on - strand, within MPMX19_02891 at 143.821 kb on - strand, within MPMX19_02891 at 143.821 kb on - strand, within MPMX19_02891 at 143.857 kb on + strand, within MPMX19_02891 at 143.857 kb on + strand, within MPMX19_02891 at 143.858 kb on - strand, within MPMX19_02891 at 143.858 kb on - strand, within MPMX19_02891 at 144.123 kb on + strand, within MPMX19_02891 at 144.123 kb on + strand, within MPMX19_02891 at 144.123 kb on + strand, within MPMX19_02891 at 144.123 kb on + strand, within MPMX19_02891 at 144.124 kb on - strand, within MPMX19_02891 at 144.124 kb on - strand, within MPMX19_02891 at 144.124 kb on - strand, within MPMX19_02891 at 144.268 kb on - strand, within MPMX19_02891 at 144.268 kb on - strand, within MPMX19_02891 at 144.297 kb on + strand, within MPMX19_02891 at 144.297 kb on + strand, within MPMX19_02891 at 144.297 kb on + strand, within MPMX19_02891 at 144.297 kb on + strand, within MPMX19_02891 at 144.298 kb on - strand, within MPMX19_02891 at 144.298 kb on - strand, within MPMX19_02891 at 144.298 kb on - strand, within MPMX19_02891 at 144.298 kb on - strand, within MPMX19_02891 at 144.384 kb on + strand, within MPMX19_02891 at 144.385 kb on - strand, within MPMX19_02891 at 144.385 kb on - strand, within MPMX19_02891 at 144.385 kb on - strand, within MPMX19_02891
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 141,343 + MPMX19_02889 0.43 +0.6 141,703 + MPMX19_02889 0.67 -0.7 141,703 + MPMX19_02889 0.67 +0.2 141,703 + MPMX19_02889 0.67 +0.1 141,703 + MPMX19_02889 0.67 -0.7 141,703 + MPMX19_02889 0.67 +0.5 141,703 + MPMX19_02889 0.67 -1.4 141,704 - MPMX19_02889 0.67 -1.4 141,704 - MPMX19_02889 0.67 -1.2 141,704 - MPMX19_02889 0.67 +0.2 141,704 - MPMX19_02889 0.67 -0.6 141,704 - MPMX19_02889 0.67 -2.3 141,742 + MPMX19_02889 0.69 -0.2 141,878 + MPMX19_02889 0.78 -1.0 141,878 + MPMX19_02889 0.78 -2.7 141,878 + MPMX19_02889 0.78 -1.8 141,878 + MPMX19_02889 0.78 -0.4 141,878 + MPMX19_02889 0.78 -1.0 141,878 + MPMX19_02889 0.78 -0.5 141,878 + MPMX19_02889 0.78 -0.2 141,878 + MPMX19_02889 0.78 -1.1 141,878 + MPMX19_02889 0.78 -0.8 141,878 + MPMX19_02889 0.78 -0.8 141,878 + MPMX19_02889 0.78 -0.1 141,878 + MPMX19_02889 0.78 +0.4 141,878 + MPMX19_02889 0.78 +1.1 141,878 + MPMX19_02889 0.78 -0.3 141,878 + MPMX19_02889 0.78 -2.1 141,878 + MPMX19_02889 0.78 -1.2 141,878 + MPMX19_02889 0.78 +0.2 141,878 + MPMX19_02889 0.78 +0.3 141,878 + MPMX19_02889 0.78 -0.9 141,878 + MPMX19_02889 0.78 -1.5 141,879 - MPMX19_02889 0.78 +0.2 141,879 - MPMX19_02889 0.78 +1.3 141,879 - MPMX19_02889 0.78 -0.6 141,879 - MPMX19_02889 0.78 -0.2 141,879 - MPMX19_02889 0.78 -0.6 141,879 - MPMX19_02889 0.78 +0.3 141,879 - MPMX19_02889 0.78 -0.5 141,879 - MPMX19_02889 0.78 +0.6 141,879 - MPMX19_02889 0.78 -0.6 141,879 - MPMX19_02889 0.78 +1.0 141,879 - MPMX19_02889 0.78 -0.4 141,879 - MPMX19_02889 0.78 +0.4 141,879 - MPMX19_02889 0.78 +0.4 141,879 - MPMX19_02889 0.78 +0.0 141,879 - MPMX19_02889 0.78 +0.6 141,879 - MPMX19_02889 0.78 -0.8 141,879 - MPMX19_02889 0.78 -0.7 141,879 - MPMX19_02889 0.78 -1.0 141,879 - MPMX19_02889 0.78 -0.5 141,880 + MPMX19_02889 0.78 +0.5 141,880 + MPMX19_02889 0.78 -0.8 141,880 + MPMX19_02889 0.78 -0.6 141,933 - MPMX19_02889 0.82 -1.8 141,933 - MPMX19_02889 0.82 +1.4 142,189 + -0.7 142,189 + -0.2 142,189 + +1.4 142,189 + +0.3 142,189 + -0.2 142,189 + -1.0 142,189 + -1.0 142,189 + -0.2 142,189 + -0.1 142,189 + -0.6 142,189 + -0.2 142,189 + -0.3 142,189 + +0.2 142,189 + -0.7 142,189 + +1.2 142,189 + -1.0 142,190 - -0.5 142,190 - -1.2 142,190 - +0.6 142,190 - -1.5 142,190 - -1.4 142,190 - +1.0 142,190 - +0.0 142,190 - +0.3 142,190 - +1.6 142,190 - -0.2 142,190 - -1.0 142,190 - +0.2 142,190 - -1.5 142,308 + -0.9 142,308 + +0.6 142,308 + +0.0 142,308 + -0.6 142,308 + -0.4 142,308 + -0.3 142,308 + +0.0 142,309 - -1.8 142,309 - -0.7 142,309 - -0.3 142,309 - -0.9 142,356 + -0.4 142,356 + +0.2 142,356 + +0.2 142,357 - -0.9 142,357 - -0.4 142,357 - +0.0 142,821 + MPMX19_02890 0.42 +0.6 142,821 + MPMX19_02890 0.42 +0.5 142,821 + MPMX19_02890 0.42 -0.1 142,822 - MPMX19_02890 0.42 +1.3 143,136 + MPMX19_02890 0.66 +0.4 143,136 + MPMX19_02890 0.66 +0.9 143,136 + MPMX19_02890 0.66 -0.6 143,136 + MPMX19_02890 0.66 -0.4 143,136 + MPMX19_02890 0.66 -0.8 143,136 + MPMX19_02890 0.66 -0.2 143,136 + MPMX19_02890 0.66 -0.3 143,136 + MPMX19_02890 0.66 +0.5 143,137 - MPMX19_02890 0.66 +0.6 143,137 - MPMX19_02890 0.66 +0.8 143,137 - MPMX19_02890 0.66 -0.2 143,137 - MPMX19_02890 0.66 +0.2 143,137 - MPMX19_02890 0.66 +0.5 143,137 - MPMX19_02890 0.66 -0.7 143,137 - MPMX19_02890 0.66 +0.2 143,137 - MPMX19_02890 0.66 +0.5 143,137 - MPMX19_02890 0.66 -0.5 143,145 + MPMX19_02890 0.66 +0.6 143,145 + MPMX19_02890 0.66 -1.4 143,145 + MPMX19_02890 0.66 -0.1 143,145 + MPMX19_02890 0.66 +0.2 143,146 - MPMX19_02890 0.67 -0.6 143,490 + -0.4 143,490 + -0.1 143,490 + +0.1 143,490 + -0.1 143,491 - -0.5 143,491 - +0.2 143,653 + -0.6 143,654 - -0.1 143,655 + +1.8 143,656 - -0.8 143,739 + MPMX19_02891 0.10 -1.8 143,740 - MPMX19_02891 0.10 -0.8 143,820 + MPMX19_02891 0.18 -0.1 143,821 - MPMX19_02891 0.18 +0.2 143,821 - MPMX19_02891 0.18 +0.9 143,821 - MPMX19_02891 0.18 -1.4 143,857 + MPMX19_02891 0.21 +0.4 143,857 + MPMX19_02891 0.21 +0.2 143,858 - MPMX19_02891 0.21 -0.2 143,858 - MPMX19_02891 0.21 +1.2 144,123 + MPMX19_02891 0.46 -0.7 144,123 + MPMX19_02891 0.46 +0.2 144,123 + MPMX19_02891 0.46 -1.2 144,123 + MPMX19_02891 0.46 -0.4 144,124 - MPMX19_02891 0.46 +0.6 144,124 - MPMX19_02891 0.46 -0.6 144,124 - MPMX19_02891 0.46 +0.2 144,268 - MPMX19_02891 0.59 -1.2 144,268 - MPMX19_02891 0.59 -1.0 144,297 + MPMX19_02891 0.62 -1.0 144,297 + MPMX19_02891 0.62 +0.6 144,297 + MPMX19_02891 0.62 +1.9 144,297 + MPMX19_02891 0.62 +1.0 144,298 - MPMX19_02891 0.62 +0.4 144,298 - MPMX19_02891 0.62 -0.5 144,298 - MPMX19_02891 0.62 -2.1 144,298 - MPMX19_02891 0.62 -0.6 144,384 + MPMX19_02891 0.70 +0.3 144,385 - MPMX19_02891 0.70 +0.5 144,385 - MPMX19_02891 0.70 -0.0 144,385 - MPMX19_02891 0.70 -0.6
Or see this region's nucleotide sequence