Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02518 and MPMX19_02519 are separated by 315 nucleotides MPMX19_02519 and MPMX19_02520 are separated by 113 nucleotides MPMX19_02520 and MPMX19_02521 are separated by 74 nucleotides MPMX19_02521 and MPMX19_02522 are separated by 21 nucleotides
MPMX19_02518: MPMX19_02518 - tRNA (guanine-N(7)-)-methyltransferase, at 2,636,345 to 2,637,097
_02518
MPMX19_02519: MPMX19_02519 - Ribosome maturation factor RimP, at 2,637,413 to 2,637,862
_02519
MPMX19_02520: MPMX19_02520 - Transcription termination/antitermination protein NusA, at 2,637,976 to 2,639,547
_02520
MPMX19_02521: MPMX19_02521 - hypothetical protein, at 2,639,622 to 2,640,422
_02521
MPMX19_02522: MPMX19_02522 - Translation initiation factor IF-2, at 2,640,444 to 2,643,329
_02522
Position (kb)
2637
2638
2639
2640 Strain fitness (log2 ratio)
-2
-1
0
1 at 2637.026 kb on + strand at 2637.026 kb on + strand at 2637.026 kb on + strand at 2637.027 kb on - strand at 2637.027 kb on - strand at 2637.027 kb on - strand at 2637.027 kb on - strand at 2637.102 kb on + strand at 2637.102 kb on + strand at 2637.102 kb on + strand at 2637.103 kb on - strand at 2637.103 kb on - strand at 2639.590 kb on + strand at 2639.590 kb on + strand at 2639.590 kb on + strand at 2639.590 kb on + strand at 2640.420 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 2,637,026 + +0.5 2,637,026 + -1.4 2,637,026 + +0.7 2,637,027 - +0.8 2,637,027 - +0.2 2,637,027 - -0.1 2,637,027 - +0.2 2,637,102 + -2.3 2,637,102 + -1.2 2,637,102 + -0.3 2,637,103 - +0.1 2,637,103 - +1.2 2,639,590 + -2.1 2,639,590 + -0.8 2,639,590 + -0.5 2,639,590 + -1.3 2,640,420 + -1.4
Or see this region's nucleotide sequence