Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_01234

Experiment: NL-CCM; low oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_01232 and MPMX19_01233 overlap by 4 nucleotidesMPMX19_01233 and MPMX19_01234 overlap by 11 nucleotidesMPMX19_01234 and MPMX19_01235 are separated by 91 nucleotidesMPMX19_01235 and MPMX19_01236 are separated by 87 nucleotides MPMX19_01232: MPMX19_01232 - Macrolide export ATP-binding/permease protein MacB, at 1,280,878 to 1,282,110 _01232 MPMX19_01233: MPMX19_01233 - putative ABC transporter ATP-binding protein YknY, at 1,282,107 to 1,282,850 _01233 MPMX19_01234: MPMX19_01234 - Multidrug resistance protein MdtA, at 1,282,840 to 1,284,486 _01234 MPMX19_01235: MPMX19_01235 - hypothetical protein, at 1,284,578 to 1,285,048 _01235 MPMX19_01236: MPMX19_01236 - 2-dehydro-3-deoxyphosphooctonate aldolase, at 1,285,136 to 1,285,963 _01236 Position (kb) 1282 1283 1284 1285Strain fitness (log2 ratio) -2 -1 0 1at 1282.471 kb on + strand, within MPMX19_01233at 1282.471 kb on + strand, within MPMX19_01233at 1282.471 kb on + strand, within MPMX19_01233at 1282.471 kb on + strand, within MPMX19_01233at 1282.471 kb on + strand, within MPMX19_01233at 1282.471 kb on + strand, within MPMX19_01233at 1282.471 kb on + strand, within MPMX19_01233at 1282.471 kb on + strand, within MPMX19_01233at 1282.471 kb on + strand, within MPMX19_01233at 1282.471 kb on + strand, within MPMX19_01233at 1282.472 kb on - strand, within MPMX19_01233at 1282.472 kb on - strand, within MPMX19_01233at 1282.472 kb on - strand, within MPMX19_01233at 1282.472 kb on - strand, within MPMX19_01233at 1282.472 kb on - strand, within MPMX19_01233at 1282.472 kb on - strand, within MPMX19_01233at 1282.472 kb on - strand, within MPMX19_01233at 1282.472 kb on - strand, within MPMX19_01233at 1282.584 kb on + strand, within MPMX19_01233at 1282.584 kb on + strand, within MPMX19_01233at 1282.584 kb on + strand, within MPMX19_01233at 1282.584 kb on + strand, within MPMX19_01233at 1282.584 kb on + strand, within MPMX19_01233at 1282.585 kb on - strand, within MPMX19_01233at 1282.585 kb on - strand, within MPMX19_01233at 1282.585 kb on - strand, within MPMX19_01233at 1282.585 kb on - strand, within MPMX19_01233at 1282.630 kb on + strand, within MPMX19_01233at 1282.630 kb on + strand, within MPMX19_01233at 1282.630 kb on + strand, within MPMX19_01233at 1282.630 kb on + strand, within MPMX19_01233at 1282.630 kb on + strand, within MPMX19_01233at 1282.630 kb on + strand, within MPMX19_01233at 1282.630 kb on + strand, within MPMX19_01233at 1282.630 kb on + strand, within MPMX19_01233at 1282.630 kb on + strand, within MPMX19_01233at 1282.631 kb on - strand, within MPMX19_01233at 1282.631 kb on - strand, within MPMX19_01233at 1282.631 kb on - strand, within MPMX19_01233at 1282.631 kb on - strand, within MPMX19_01233at 1282.631 kb on - strand, within MPMX19_01233at 1282.809 kb on - strandat 1282.809 kb on - strandat 1283.486 kb on + strand, within MPMX19_01234at 1283.486 kb on + strand, within MPMX19_01234at 1283.486 kb on + strand, within MPMX19_01234at 1283.486 kb on + strand, within MPMX19_01234at 1283.486 kb on + strand, within MPMX19_01234at 1283.486 kb on + strand, within MPMX19_01234at 1283.486 kb on + strand, within MPMX19_01234at 1283.486 kb on + strand, within MPMX19_01234at 1283.486 kb on + strand, within MPMX19_01234at 1283.486 kb on + strand, within MPMX19_01234at 1283.486 kb on + strand, within MPMX19_01234at 1283.486 kb on + strand, within MPMX19_01234at 1283.486 kb on + strand, within MPMX19_01234at 1283.486 kb on + strand, within MPMX19_01234at 1283.486 kb on + strand, within MPMX19_01234at 1283.486 kb on + strand, within MPMX19_01234at 1283.486 kb on + strand, within MPMX19_01234at 1283.486 kb on + strand, within MPMX19_01234at 1283.486 kb on + strand, within MPMX19_01234at 1283.486 kb on + strand, within MPMX19_01234at 1283.486 kb on + strand, within MPMX19_01234at 1283.486 kb on + strand, within MPMX19_01234at 1283.486 kb on + strand, within MPMX19_01234at 1283.486 kb on + strand, within MPMX19_01234at 1283.486 kb on + strand, within MPMX19_01234at 1283.486 kb on + strand, within MPMX19_01234at 1283.487 kb on - strand, within MPMX19_01234at 1283.487 kb on - strand, within MPMX19_01234at 1283.487 kb on - strand, within MPMX19_01234at 1283.487 kb on - strand, within MPMX19_01234at 1283.487 kb on - strand, within MPMX19_01234at 1283.487 kb on - strand, within MPMX19_01234at 1283.487 kb on - strand, within MPMX19_01234at 1283.487 kb on - strand, within MPMX19_01234at 1283.487 kb on - strand, within MPMX19_01234at 1283.487 kb on - strand, within MPMX19_01234at 1283.487 kb on - strand, within MPMX19_01234at 1283.487 kb on - strand, within MPMX19_01234at 1283.487 kb on - strand, within MPMX19_01234at 1283.487 kb on - strand, within MPMX19_01234at 1283.487 kb on - strand, within MPMX19_01234at 1283.487 kb on - strand, within MPMX19_01234at 1283.487 kb on - strand, within MPMX19_01234at 1284.254 kb on + strand, within MPMX19_01234at 1284.254 kb on + strand, within MPMX19_01234at 1284.255 kb on - strand, within MPMX19_01234at 1284.255 kb on - strand, within MPMX19_01234at 1284.255 kb on - strand, within MPMX19_01234at 1284.255 kb on - strand, within MPMX19_01234at 1284.375 kb on - strandat 1284.410 kb on + strandat 1284.410 kb on + strandat 1284.410 kb on + strandat 1284.410 kb on + strandat 1284.410 kb on + strandat 1284.410 kb on + strandat 1284.410 kb on + strandat 1284.410 kb on + strandat 1284.410 kb on + strandat 1284.410 kb on + strandat 1284.410 kb on + strandat 1284.410 kb on + strandat 1284.410 kb on + strandat 1284.410 kb on + strandat 1284.410 kb on + strandat 1284.411 kb on - strandat 1284.411 kb on - strandat 1284.411 kb on - strandat 1284.411 kb on - strandat 1284.411 kb on - strandat 1284.411 kb on - strandat 1284.411 kb on - strandat 1284.411 kb on - strandat 1284.411 kb on - strandat 1284.535 kb on - strandat 1284.580 kb on - strandat 1284.819 kb on + strand, within MPMX19_01235at 1284.819 kb on + strand, within MPMX19_01235at 1284.819 kb on + strand, within MPMX19_01235at 1284.820 kb on - strand, within MPMX19_01235at 1284.820 kb on - strand, within MPMX19_01235at 1284.820 kb on - strand, within MPMX19_01235at 1284.820 kb on - strand, within MPMX19_01235at 1285.127 kb on + strandat 1285.127 kb on + strandat 1285.127 kb on + strandat 1285.128 kb on - strandat 1285.128 kb on - strandat 1285.128 kb on - strandat 1285.128 kb on - strandat 1285.128 kb on - strandat 1285.128 kb on - strandat 1285.128 kb on - strandat 1285.128 kb on - strandat 1285.128 kb on - strandat 1285.128 kb on - strandat 1285.138 kb on - strandat 1285.138 kb on - strandat 1285.138 kb on - strandat 1285.138 kb on - strandat 1285.138 kb on - strandat 1285.138 kb on - strandat 1285.138 kb on - strandat 1285.138 kb on - strandat 1285.138 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; low oxygen
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1,282,471 + MPMX19_01233 0.49 -0.0
1,282,471 + MPMX19_01233 0.49 -0.8
1,282,471 + MPMX19_01233 0.49 -1.0
1,282,471 + MPMX19_01233 0.49 -1.4
1,282,471 + MPMX19_01233 0.49 +0.2
1,282,471 + MPMX19_01233 0.49 -0.0
1,282,471 + MPMX19_01233 0.49 +0.6
1,282,471 + MPMX19_01233 0.49 -1.4
1,282,471 + MPMX19_01233 0.49 -0.4
1,282,471 + MPMX19_01233 0.49 -2.0
1,282,472 - MPMX19_01233 0.49 -1.4
1,282,472 - MPMX19_01233 0.49 -0.2
1,282,472 - MPMX19_01233 0.49 -0.2
1,282,472 - MPMX19_01233 0.49 +0.5
1,282,472 - MPMX19_01233 0.49 -1.4
1,282,472 - MPMX19_01233 0.49 -1.6
1,282,472 - MPMX19_01233 0.49 -0.6
1,282,472 - MPMX19_01233 0.49 -0.8
1,282,584 + MPMX19_01233 0.64 -1.8
1,282,584 + MPMX19_01233 0.64 -0.8
1,282,584 + MPMX19_01233 0.64 +0.7
1,282,584 + MPMX19_01233 0.64 -0.3
1,282,584 + MPMX19_01233 0.64 -1.2
1,282,585 - MPMX19_01233 0.64 -0.2
1,282,585 - MPMX19_01233 0.64 -2.0
1,282,585 - MPMX19_01233 0.64 -1.3
1,282,585 - MPMX19_01233 0.64 +0.6
1,282,630 + MPMX19_01233 0.70 -0.0
1,282,630 + MPMX19_01233 0.70 -1.3
1,282,630 + MPMX19_01233 0.70 -0.4
1,282,630 + MPMX19_01233 0.70 -1.9
1,282,630 + MPMX19_01233 0.70 +0.2
1,282,630 + MPMX19_01233 0.70 -1.4
1,282,630 + MPMX19_01233 0.70 +0.0
1,282,630 + MPMX19_01233 0.70 -1.4
1,282,630 + MPMX19_01233 0.70 -0.4
1,282,631 - MPMX19_01233 0.70 +0.6
1,282,631 - MPMX19_01233 0.70 +0.7
1,282,631 - MPMX19_01233 0.70 -0.5
1,282,631 - MPMX19_01233 0.70 -0.6
1,282,631 - MPMX19_01233 0.70 -0.4
1,282,809 - -0.0
1,282,809 - -0.1
1,283,486 + MPMX19_01234 0.39 -0.1
1,283,486 + MPMX19_01234 0.39 +0.3
1,283,486 + MPMX19_01234 0.39 -0.0
1,283,486 + MPMX19_01234 0.39 -0.7
1,283,486 + MPMX19_01234 0.39 +0.1
1,283,486 + MPMX19_01234 0.39 +1.6
1,283,486 + MPMX19_01234 0.39 -0.8
1,283,486 + MPMX19_01234 0.39 -1.4
1,283,486 + MPMX19_01234 0.39 -0.7
1,283,486 + MPMX19_01234 0.39 -2.1
1,283,486 + MPMX19_01234 0.39 +0.1
1,283,486 + MPMX19_01234 0.39 -0.9
1,283,486 + MPMX19_01234 0.39 -0.2
1,283,486 + MPMX19_01234 0.39 +0.3
1,283,486 + MPMX19_01234 0.39 -1.0
1,283,486 + MPMX19_01234 0.39 +0.4
1,283,486 + MPMX19_01234 0.39 -0.8
1,283,486 + MPMX19_01234 0.39 -0.1
1,283,486 + MPMX19_01234 0.39 -0.4
1,283,486 + MPMX19_01234 0.39 -0.3
1,283,486 + MPMX19_01234 0.39 -0.1
1,283,486 + MPMX19_01234 0.39 -0.8
1,283,486 + MPMX19_01234 0.39 -0.6
1,283,486 + MPMX19_01234 0.39 -2.6
1,283,486 + MPMX19_01234 0.39 -0.6
1,283,486 + MPMX19_01234 0.39 -0.4
1,283,487 - MPMX19_01234 0.39 +0.2
1,283,487 - MPMX19_01234 0.39 +0.1
1,283,487 - MPMX19_01234 0.39 -0.0
1,283,487 - MPMX19_01234 0.39 -1.9
1,283,487 - MPMX19_01234 0.39 -1.8
1,283,487 - MPMX19_01234 0.39 -2.1
1,283,487 - MPMX19_01234 0.39 -0.5
1,283,487 - MPMX19_01234 0.39 -1.3
1,283,487 - MPMX19_01234 0.39 -1.0
1,283,487 - MPMX19_01234 0.39 -2.3
1,283,487 - MPMX19_01234 0.39 -1.4
1,283,487 - MPMX19_01234 0.39 -0.3
1,283,487 - MPMX19_01234 0.39 +0.9
1,283,487 - MPMX19_01234 0.39 -1.1
1,283,487 - MPMX19_01234 0.39 -1.4
1,283,487 - MPMX19_01234 0.39 -0.4
1,283,487 - MPMX19_01234 0.39 -1.1
1,284,254 + MPMX19_01234 0.86 -0.8
1,284,254 + MPMX19_01234 0.86 +0.6
1,284,255 - MPMX19_01234 0.86 -0.6
1,284,255 - MPMX19_01234 0.86 -0.6
1,284,255 - MPMX19_01234 0.86 -0.4
1,284,255 - MPMX19_01234 0.86 -0.7
1,284,375 - -0.9
1,284,410 + -0.1
1,284,410 + -0.9
1,284,410 + +0.4
1,284,410 + +0.6
1,284,410 + -0.7
1,284,410 + -0.0
1,284,410 + -1.4
1,284,410 + -1.2
1,284,410 + -0.3
1,284,410 + -1.0
1,284,410 + -0.0
1,284,410 + -0.6
1,284,410 + +0.3
1,284,410 + -0.3
1,284,410 + -0.1
1,284,411 - -1.0
1,284,411 - -1.4
1,284,411 - -0.0
1,284,411 - +0.3
1,284,411 - +0.4
1,284,411 - -0.3
1,284,411 - -0.9
1,284,411 - -0.6
1,284,411 - -0.4
1,284,535 - -1.3
1,284,580 - -1.8
1,284,819 + MPMX19_01235 0.51 -0.3
1,284,819 + MPMX19_01235 0.51 -1.6
1,284,819 + MPMX19_01235 0.51 -0.2
1,284,820 - MPMX19_01235 0.51 -1.0
1,284,820 - MPMX19_01235 0.51 -0.9
1,284,820 - MPMX19_01235 0.51 -0.0
1,284,820 - MPMX19_01235 0.51 +0.2
1,285,127 + -2.4
1,285,127 + -0.4
1,285,127 + -0.8
1,285,128 - +1.6
1,285,128 - +0.4
1,285,128 - -2.3
1,285,128 - -0.4
1,285,128 - -0.3
1,285,128 - -0.4
1,285,128 - -2.1
1,285,128 - -0.8
1,285,128 - +0.6
1,285,128 - +0.2
1,285,138 - +0.4
1,285,138 - +0.0
1,285,138 - -1.3
1,285,138 - -1.2
1,285,138 - +0.2
1,285,138 - -0.7
1,285,138 - -0.7
1,285,138 - -0.0
1,285,138 - -0.2

Or see this region's nucleotide sequence