Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00210

Experiment: NL-CCM; low oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00209 and MPMX19_00210 are separated by 242 nucleotidesMPMX19_00210 and MPMX19_00211 are separated by 38 nucleotides MPMX19_00209: MPMX19_00209 - Cbb3-type cytochrome c oxidase subunit FixP, at 210,422 to 211,312 _00209 MPMX19_00210: MPMX19_00210 - hypothetical protein, at 211,555 to 212,085 _00210 MPMX19_00211: MPMX19_00211 - putative copper-importing P-type ATPase A, at 212,124 to 214,658 _00211 Position (kb) 211 212 213Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 210.560 kb on + strand, within MPMX19_00209at 210.560 kb on + strand, within MPMX19_00209at 210.560 kb on + strand, within MPMX19_00209at 210.560 kb on + strand, within MPMX19_00209at 210.560 kb on + strand, within MPMX19_00209at 210.560 kb on + strand, within MPMX19_00209at 210.560 kb on + strand, within MPMX19_00209at 210.560 kb on + strand, within MPMX19_00209at 210.560 kb on + strand, within MPMX19_00209at 210.561 kb on - strand, within MPMX19_00209at 210.561 kb on - strand, within MPMX19_00209at 210.561 kb on - strand, within MPMX19_00209at 210.561 kb on - strand, within MPMX19_00209at 210.561 kb on - strand, within MPMX19_00209at 210.561 kb on - strand, within MPMX19_00209at 210.561 kb on - strand, within MPMX19_00209at 210.561 kb on - strand, within MPMX19_00209at 210.563 kb on + strand, within MPMX19_00209at 210.563 kb on + strand, within MPMX19_00209at 210.563 kb on + strand, within MPMX19_00209at 210.563 kb on + strand, within MPMX19_00209at 210.563 kb on + strand, within MPMX19_00209at 210.563 kb on + strand, within MPMX19_00209at 210.563 kb on + strand, within MPMX19_00209at 210.563 kb on + strand, within MPMX19_00209at 210.564 kb on - strand, within MPMX19_00209at 210.564 kb on - strand, within MPMX19_00209at 210.564 kb on - strand, within MPMX19_00209at 210.564 kb on - strand, within MPMX19_00209at 210.564 kb on - strand, within MPMX19_00209at 210.564 kb on - strand, within MPMX19_00209at 210.564 kb on - strand, within MPMX19_00209at 210.564 kb on - strand, within MPMX19_00209at 210.572 kb on + strand, within MPMX19_00209at 210.572 kb on + strand, within MPMX19_00209at 210.572 kb on + strand, within MPMX19_00209at 210.599 kb on + strand, within MPMX19_00209at 210.599 kb on + strand, within MPMX19_00209at 210.599 kb on + strand, within MPMX19_00209at 210.600 kb on - strand, within MPMX19_00209at 210.620 kb on + strand, within MPMX19_00209at 210.621 kb on - strand, within MPMX19_00209at 210.767 kb on + strand, within MPMX19_00209at 210.768 kb on - strand, within MPMX19_00209at 210.768 kb on - strand, within MPMX19_00209at 210.768 kb on - strand, within MPMX19_00209at 210.768 kb on - strand, within MPMX19_00209at 210.768 kb on - strand, within MPMX19_00209at 210.768 kb on - strand, within MPMX19_00209at 210.768 kb on - strand, within MPMX19_00209at 210.878 kb on + strand, within MPMX19_00209at 210.878 kb on + strand, within MPMX19_00209at 210.878 kb on + strand, within MPMX19_00209at 210.878 kb on + strand, within MPMX19_00209at 210.878 kb on + strand, within MPMX19_00209at 210.878 kb on + strand, within MPMX19_00209at 210.878 kb on + strand, within MPMX19_00209at 210.879 kb on - strand, within MPMX19_00209at 210.879 kb on - strand, within MPMX19_00209at 210.879 kb on - strand, within MPMX19_00209at 210.879 kb on - strand, within MPMX19_00209at 210.879 kb on - strand, within MPMX19_00209at 210.879 kb on - strand, within MPMX19_00209at 210.879 kb on - strand, within MPMX19_00209at 210.879 kb on - strand, within MPMX19_00209at 210.879 kb on - strand, within MPMX19_00209at 210.879 kb on - strand, within MPMX19_00209at 210.879 kb on - strand, within MPMX19_00209at 210.879 kb on - strand, within MPMX19_00209at 210.879 kb on - strand, within MPMX19_00209at 210.879 kb on - strand, within MPMX19_00209at 211.004 kb on + strand, within MPMX19_00209at 211.004 kb on + strand, within MPMX19_00209at 211.004 kb on + strand, within MPMX19_00209at 211.004 kb on + strand, within MPMX19_00209at 211.004 kb on + strand, within MPMX19_00209at 211.004 kb on + strand, within MPMX19_00209at 211.004 kb on + strand, within MPMX19_00209at 211.004 kb on + strand, within MPMX19_00209at 211.004 kb on + strand, within MPMX19_00209at 211.004 kb on + strand, within MPMX19_00209at 211.004 kb on + strand, within MPMX19_00209at 211.004 kb on + strand, within MPMX19_00209at 211.005 kb on - strand, within MPMX19_00209at 211.005 kb on - strand, within MPMX19_00209at 211.005 kb on - strand, within MPMX19_00209at 211.005 kb on - strand, within MPMX19_00209at 211.005 kb on - strand, within MPMX19_00209at 211.005 kb on - strand, within MPMX19_00209at 211.005 kb on - strand, within MPMX19_00209at 211.067 kb on + strand, within MPMX19_00209at 211.067 kb on + strand, within MPMX19_00209at 211.067 kb on + strand, within MPMX19_00209at 211.068 kb on - strand, within MPMX19_00209at 211.068 kb on - strand, within MPMX19_00209at 211.173 kb on - strand, within MPMX19_00209at 211.283 kb on + strandat 211.283 kb on + strandat 211.284 kb on - strandat 211.284 kb on - strandat 211.310 kb on + strandat 211.310 kb on + strandat 211.310 kb on + strandat 211.310 kb on + strandat 211.311 kb on - strandat 211.311 kb on - strandat 211.311 kb on - strandat 211.311 kb on - strandat 211.311 kb on - strandat 211.311 kb on - strandat 211.311 kb on - strandat 211.450 kb on + strandat 211.450 kb on + strandat 211.450 kb on + strandat 211.450 kb on + strandat 211.450 kb on + strandat 211.450 kb on + strandat 211.450 kb on + strandat 211.450 kb on + strandat 211.450 kb on + strandat 211.450 kb on + strandat 211.450 kb on + strandat 211.450 kb on + strandat 211.450 kb on + strandat 211.450 kb on + strandat 211.450 kb on + strandat 211.450 kb on + strandat 211.450 kb on + strandat 211.450 kb on + strandat 211.450 kb on + strandat 211.450 kb on + strandat 211.450 kb on + strandat 211.450 kb on + strandat 211.451 kb on - strandat 211.451 kb on - strandat 211.451 kb on - strandat 211.451 kb on - strandat 211.451 kb on - strandat 211.451 kb on - strandat 211.451 kb on - strandat 211.451 kb on - strandat 211.451 kb on - strandat 211.451 kb on - strandat 211.451 kb on - strandat 211.451 kb on - strandat 211.472 kb on + strandat 211.472 kb on + strandat 211.472 kb on + strandat 211.472 kb on + strandat 211.472 kb on + strandat 211.472 kb on + strandat 211.472 kb on + strandat 211.472 kb on + strandat 211.472 kb on + strandat 211.472 kb on + strandat 211.472 kb on + strandat 211.472 kb on + strandat 211.472 kb on + strandat 211.473 kb on - strandat 211.473 kb on - strandat 211.473 kb on - strandat 211.473 kb on - strandat 211.473 kb on - strandat 211.473 kb on - strandat 211.516 kb on + strandat 211.516 kb on + strandat 211.516 kb on + strandat 211.516 kb on + strandat 211.630 kb on + strand, within MPMX19_00210at 211.630 kb on + strand, within MPMX19_00210at 211.630 kb on + strand, within MPMX19_00210at 211.630 kb on + strand, within MPMX19_00210at 211.630 kb on + strand, within MPMX19_00210at 211.630 kb on + strand, within MPMX19_00210at 211.630 kb on + strand, within MPMX19_00210at 211.630 kb on + strand, within MPMX19_00210at 211.630 kb on + strand, within MPMX19_00210at 211.630 kb on + strand, within MPMX19_00210at 211.630 kb on + strand, within MPMX19_00210at 211.630 kb on + strand, within MPMX19_00210at 211.630 kb on + strand, within MPMX19_00210at 211.630 kb on + strand, within MPMX19_00210at 211.630 kb on + strand, within MPMX19_00210at 211.630 kb on + strand, within MPMX19_00210at 211.630 kb on + strand, within MPMX19_00210at 211.631 kb on - strand, within MPMX19_00210at 211.631 kb on - strand, within MPMX19_00210at 211.631 kb on - strand, within MPMX19_00210at 211.631 kb on - strand, within MPMX19_00210at 211.631 kb on - strand, within MPMX19_00210at 211.631 kb on - strand, within MPMX19_00210at 211.631 kb on - strand, within MPMX19_00210at 211.631 kb on - strand, within MPMX19_00210at 211.631 kb on - strand, within MPMX19_00210at 211.631 kb on - strand, within MPMX19_00210at 211.631 kb on - strand, within MPMX19_00210at 211.631 kb on - strand, within MPMX19_00210at 211.631 kb on - strand, within MPMX19_00210at 211.631 kb on - strand, within MPMX19_00210at 211.631 kb on - strand, within MPMX19_00210at 211.631 kb on - strand, within MPMX19_00210at 211.631 kb on - strand, within MPMX19_00210at 211.631 kb on - strand, within MPMX19_00210at 211.631 kb on - strand, within MPMX19_00210at 211.631 kb on - strand, within MPMX19_00210at 211.631 kb on - strand, within MPMX19_00210at 211.756 kb on + strand, within MPMX19_00210at 211.757 kb on - strand, within MPMX19_00210at 211.960 kb on + strand, within MPMX19_00210at 211.960 kb on + strand, within MPMX19_00210at 211.960 kb on + strand, within MPMX19_00210at 211.960 kb on + strand, within MPMX19_00210at 211.960 kb on + strand, within MPMX19_00210at 211.961 kb on - strand, within MPMX19_00210at 211.961 kb on - strand, within MPMX19_00210at 211.961 kb on - strand, within MPMX19_00210at 211.978 kb on + strand, within MPMX19_00210at 211.978 kb on + strand, within MPMX19_00210at 211.978 kb on + strand, within MPMX19_00210at 212.053 kb on + strandat 212.053 kb on + strandat 212.235 kb on + strandat 212.235 kb on + strandat 212.235 kb on + strandat 212.236 kb on - strandat 212.236 kb on - strandat 212.268 kb on + strandat 212.268 kb on + strandat 212.269 kb on - strandat 212.269 kb on - strandat 212.271 kb on + strandat 212.271 kb on + strandat 212.271 kb on + strandat 212.337 kb on + strandat 212.778 kb on + strand, within MPMX19_00211at 212.779 kb on - strand, within MPMX19_00211at 212.779 kb on - strand, within MPMX19_00211at 212.919 kb on + strand, within MPMX19_00211at 212.919 kb on + strand, within MPMX19_00211at 212.919 kb on + strand, within MPMX19_00211

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; low oxygen
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210,560 + MPMX19_00209 0.15 +0.5
210,560 + MPMX19_00209 0.15 +0.5
210,560 + MPMX19_00209 0.15 +1.5
210,560 + MPMX19_00209 0.15 -0.5
210,560 + MPMX19_00209 0.15 -1.1
210,560 + MPMX19_00209 0.15 -1.1
210,560 + MPMX19_00209 0.15 +0.2
210,560 + MPMX19_00209 0.15 +0.9
210,560 + MPMX19_00209 0.15 +2.5
210,561 - MPMX19_00209 0.16 -0.8
210,561 - MPMX19_00209 0.16 +0.1
210,561 - MPMX19_00209 0.16 -0.5
210,561 - MPMX19_00209 0.16 +0.5
210,561 - MPMX19_00209 0.16 +1.5
210,561 - MPMX19_00209 0.16 +0.5
210,561 - MPMX19_00209 0.16 +0.5
210,561 - MPMX19_00209 0.16 +0.5
210,563 + MPMX19_00209 0.16 +1.5
210,563 + MPMX19_00209 0.16 -0.1
210,563 + MPMX19_00209 0.16 +1.1
210,563 + MPMX19_00209 0.16 +0.8
210,563 + MPMX19_00209 0.16 +0.1
210,563 + MPMX19_00209 0.16 +1.5
210,563 + MPMX19_00209 0.16 -0.5
210,563 + MPMX19_00209 0.16 +2.5
210,564 - MPMX19_00209 0.16 +0.5
210,564 - MPMX19_00209 0.16 -0.8
210,564 - MPMX19_00209 0.16 +3.1
210,564 - MPMX19_00209 0.16 +1.5
210,564 - MPMX19_00209 0.16 +0.5
210,564 - MPMX19_00209 0.16 +3.8
210,564 - MPMX19_00209 0.16 +1.9
210,564 - MPMX19_00209 0.16 -0.5
210,572 + MPMX19_00209 0.17 +0.1
210,572 + MPMX19_00209 0.17 +0.2
210,572 + MPMX19_00209 0.17 -0.1
210,599 + MPMX19_00209 0.20 -1.3
210,599 + MPMX19_00209 0.20 +0.5
210,599 + MPMX19_00209 0.20 +0.5
210,600 - MPMX19_00209 0.20 +0.5
210,620 + MPMX19_00209 0.22 -0.5
210,621 - MPMX19_00209 0.22 +1.5
210,767 + MPMX19_00209 0.39 -0.1
210,768 - MPMX19_00209 0.39 +0.5
210,768 - MPMX19_00209 0.39 +0.2
210,768 - MPMX19_00209 0.39 +1.5
210,768 - MPMX19_00209 0.39 -0.1
210,768 - MPMX19_00209 0.39 +0.2
210,768 - MPMX19_00209 0.39 +1.5
210,768 - MPMX19_00209 0.39 -0.1
210,878 + MPMX19_00209 0.51 -0.1
210,878 + MPMX19_00209 0.51 +0.5
210,878 + MPMX19_00209 0.51 -1.1
210,878 + MPMX19_00209 0.51 -0.3
210,878 + MPMX19_00209 0.51 -1.3
210,878 + MPMX19_00209 0.51 -0.3
210,878 + MPMX19_00209 0.51 +0.7
210,879 - MPMX19_00209 0.51 +1.0
210,879 - MPMX19_00209 0.51 +1.5
210,879 - MPMX19_00209 0.51 +1.9
210,879 - MPMX19_00209 0.51 -1.3
210,879 - MPMX19_00209 0.51 +0.9
210,879 - MPMX19_00209 0.51 -0.5
210,879 - MPMX19_00209 0.51 +0.9
210,879 - MPMX19_00209 0.51 +0.5
210,879 - MPMX19_00209 0.51 -0.3
210,879 - MPMX19_00209 0.51 +0.3
210,879 - MPMX19_00209 0.51 +1.3
210,879 - MPMX19_00209 0.51 -1.1
210,879 - MPMX19_00209 0.51 -0.1
210,879 - MPMX19_00209 0.51 +0.9
211,004 + MPMX19_00209 0.65 +1.5
211,004 + MPMX19_00209 0.65 +1.1
211,004 + MPMX19_00209 0.65 +1.5
211,004 + MPMX19_00209 0.65 +1.5
211,004 + MPMX19_00209 0.65 +1.1
211,004 + MPMX19_00209 0.65 +2.8
211,004 + MPMX19_00209 0.65 +3.8
211,004 + MPMX19_00209 0.65 +1.5
211,004 + MPMX19_00209 0.65 +0.5
211,004 + MPMX19_00209 0.65 +0.4
211,004 + MPMX19_00209 0.65 +1.5
211,004 + MPMX19_00209 0.65 -0.8
211,005 - MPMX19_00209 0.65 +1.9
211,005 - MPMX19_00209 0.65 +2.5
211,005 - MPMX19_00209 0.65 -0.5
211,005 - MPMX19_00209 0.65 +1.5
211,005 - MPMX19_00209 0.65 +0.2
211,005 - MPMX19_00209 0.65 +0.9
211,005 - MPMX19_00209 0.65 +0.2
211,067 + MPMX19_00209 0.72 -1.5
211,067 + MPMX19_00209 0.72 +0.9
211,067 + MPMX19_00209 0.72 -1.3
211,068 - MPMX19_00209 0.73 -1.6
211,068 - MPMX19_00209 0.73 +1.1
211,173 - MPMX19_00209 0.84 +0.5
211,283 + +1.7
211,283 + +3.1
211,284 - +0.5
211,284 - +0.5
211,310 + -1.6
211,310 + +0.6
211,310 + +0.2
211,310 + +0.5
211,311 - +0.9
211,311 - +1.1
211,311 - -0.2
211,311 - -0.1
211,311 - -1.4
211,311 - +0.6
211,311 - +0.4
211,450 + -1.1
211,450 + +0.0
211,450 + +0.3
211,450 + -0.1
211,450 + -0.2
211,450 + -0.6
211,450 + -0.1
211,450 + -1.6
211,450 + -0.3
211,450 + -0.2
211,450 + +0.2
211,450 + -0.6
211,450 + +0.9
211,450 + -0.2
211,450 + +0.1
211,450 + -1.4
211,450 + -1.0
211,450 + +0.5
211,450 + -0.7
211,450 + +0.1
211,450 + -0.6
211,450 + -1.1
211,451 - -1.6
211,451 - +0.5
211,451 - -0.7
211,451 - -0.5
211,451 - -0.1
211,451 - -0.2
211,451 - +0.2
211,451 - +1.5
211,451 - -1.5
211,451 - -2.4
211,451 - -1.6
211,451 - -0.5
211,472 + +0.2
211,472 + -0.4
211,472 + -0.7
211,472 + +0.5
211,472 + +0.5
211,472 + +1.1
211,472 + -1.3
211,472 + +1.0
211,472 + -0.3
211,472 + -0.7
211,472 + +1.3
211,472 + -0.1
211,472 + +0.1
211,473 - -0.5
211,473 - -1.8
211,473 - +0.9
211,473 - -0.2
211,473 - +0.9
211,473 - +0.4
211,516 + -1.8
211,516 + -0.7
211,516 + +0.5
211,516 + -0.8
211,630 + MPMX19_00210 0.14 +1.1
211,630 + MPMX19_00210 0.14 -0.5
211,630 + MPMX19_00210 0.14 +0.9
211,630 + MPMX19_00210 0.14 +2.5
211,630 + MPMX19_00210 0.14 -0.9
211,630 + MPMX19_00210 0.14 +0.5
211,630 + MPMX19_00210 0.14 -1.9
211,630 + MPMX19_00210 0.14 +0.1
211,630 + MPMX19_00210 0.14 +0.9
211,630 + MPMX19_00210 0.14 -0.7
211,630 + MPMX19_00210 0.14 +1.5
211,630 + MPMX19_00210 0.14 -0.8
211,630 + MPMX19_00210 0.14 +1.8
211,630 + MPMX19_00210 0.14 +0.6
211,630 + MPMX19_00210 0.14 +1.5
211,630 + MPMX19_00210 0.14 -0.1
211,630 + MPMX19_00210 0.14 -1.5
211,631 - MPMX19_00210 0.14 +1.5
211,631 - MPMX19_00210 0.14 -1.3
211,631 - MPMX19_00210 0.14 -1.1
211,631 - MPMX19_00210 0.14 -0.1
211,631 - MPMX19_00210 0.14 -1.3
211,631 - MPMX19_00210 0.14 -1.3
211,631 - MPMX19_00210 0.14 +0.5
211,631 - MPMX19_00210 0.14 +0.8
211,631 - MPMX19_00210 0.14 +2.5
211,631 - MPMX19_00210 0.14 +0.2
211,631 - MPMX19_00210 0.14 +0.9
211,631 - MPMX19_00210 0.14 -0.1
211,631 - MPMX19_00210 0.14 -0.3
211,631 - MPMX19_00210 0.14 +0.5
211,631 - MPMX19_00210 0.14 +1.5
211,631 - MPMX19_00210 0.14 +0.9
211,631 - MPMX19_00210 0.14 +0.5
211,631 - MPMX19_00210 0.14 -0.1
211,631 - MPMX19_00210 0.14 +2.5
211,631 - MPMX19_00210 0.14 -0.1
211,631 - MPMX19_00210 0.14 -0.1
211,756 + MPMX19_00210 0.38 -0.8
211,757 - MPMX19_00210 0.38 +1.1
211,960 + MPMX19_00210 0.76 +0.5
211,960 + MPMX19_00210 0.76 +0.8
211,960 + MPMX19_00210 0.76 +0.5
211,960 + MPMX19_00210 0.76 -0.8
211,960 + MPMX19_00210 0.76 -1.9
211,961 - MPMX19_00210 0.76 -0.1
211,961 - MPMX19_00210 0.76 +0.5
211,961 - MPMX19_00210 0.76 +1.9
211,978 + MPMX19_00210 0.80 +0.5
211,978 + MPMX19_00210 0.80 +0.8
211,978 + MPMX19_00210 0.80 +0.6
212,053 + +0.3
212,053 + +1.7
212,235 + +0.5
212,235 + -0.5
212,235 + -0.5
212,236 - +0.6
212,236 - +0.9
212,268 + +1.5
212,268 + +1.5
212,269 - +2.1
212,269 - +0.2
212,271 + -1.1
212,271 + +0.5
212,271 + +0.5
212,337 + +1.2
212,778 + MPMX19_00211 0.26 +0.9
212,779 - MPMX19_00211 0.26 -0.1
212,779 - MPMX19_00211 0.26 +0.2
212,919 + MPMX19_00211 0.31 +0.9
212,919 + MPMX19_00211 0.31 +0.5
212,919 + MPMX19_00211 0.31 +0.8

Or see this region's nucleotide sequence