Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00043 and MPMX19_00044 are separated by 218 nucleotides MPMX19_00044 and MPMX19_00045 are separated by 37 nucleotides MPMX19_00045 and MPMX19_00046 are separated by 150 nucleotides
MPMX19_00043: MPMX19_00043 - Ribonuclease BN, at 45,490 to 46,410
_00043
MPMX19_00044: MPMX19_00044 - hypothetical protein, at 46,629 to 47,423
_00044
MPMX19_00045: MPMX19_00045 - Alkaline phosphatase synthesis transcriptional regulatory protein SphR, at 47,461 to 48,165
_00045
MPMX19_00046: MPMX19_00046 - hypothetical protein, at 48,316 to 48,834
_00046
Position (kb) 46
47
48 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 45.690 kb on - strand, within MPMX19_00043 at 45.704 kb on + strand, within MPMX19_00043 at 45.704 kb on + strand, within MPMX19_00043 at 45.704 kb on + strand, within MPMX19_00043 at 45.704 kb on + strand, within MPMX19_00043 at 45.704 kb on + strand, within MPMX19_00043 at 45.704 kb on + strand, within MPMX19_00043 at 45.704 kb on + strand, within MPMX19_00043 at 45.704 kb on + strand, within MPMX19_00043 at 45.704 kb on + strand, within MPMX19_00043 at 45.704 kb on + strand, within MPMX19_00043 at 45.704 kb on + strand, within MPMX19_00043 at 45.704 kb on + strand, within MPMX19_00043 at 45.704 kb on + strand, within MPMX19_00043 at 45.704 kb on + strand, within MPMX19_00043 at 45.704 kb on + strand, within MPMX19_00043 at 45.704 kb on + strand, within MPMX19_00043 at 45.705 kb on - strand, within MPMX19_00043 at 45.705 kb on - strand, within MPMX19_00043 at 45.705 kb on - strand, within MPMX19_00043 at 45.705 kb on - strand, within MPMX19_00043 at 45.705 kb on - strand, within MPMX19_00043 at 45.705 kb on - strand, within MPMX19_00043 at 45.705 kb on - strand, within MPMX19_00043 at 45.705 kb on - strand, within MPMX19_00043 at 45.705 kb on - strand, within MPMX19_00043 at 45.705 kb on - strand, within MPMX19_00043 at 45.705 kb on - strand, within MPMX19_00043 at 45.705 kb on - strand, within MPMX19_00043 at 45.705 kb on - strand, within MPMX19_00043 at 45.705 kb on - strand, within MPMX19_00043 at 45.705 kb on - strand, within MPMX19_00043 at 45.705 kb on - strand, within MPMX19_00043 at 45.705 kb on - strand, within MPMX19_00043 at 45.716 kb on + strand, within MPMX19_00043 at 45.716 kb on + strand, within MPMX19_00043 at 45.716 kb on + strand, within MPMX19_00043 at 45.716 kb on + strand, within MPMX19_00043 at 45.716 kb on + strand, within MPMX19_00043 at 45.716 kb on + strand, within MPMX19_00043 at 45.716 kb on + strand, within MPMX19_00043 at 45.716 kb on + strand, within MPMX19_00043 at 45.716 kb on + strand, within MPMX19_00043 at 45.716 kb on + strand, within MPMX19_00043 at 45.716 kb on + strand, within MPMX19_00043 at 45.717 kb on - strand, within MPMX19_00043 at 45.717 kb on - strand, within MPMX19_00043 at 45.717 kb on - strand, within MPMX19_00043 at 45.717 kb on - strand, within MPMX19_00043 at 45.717 kb on - strand, within MPMX19_00043 at 45.717 kb on - strand, within MPMX19_00043 at 46.244 kb on + strand, within MPMX19_00043 at 46.244 kb on + strand, within MPMX19_00043 at 46.244 kb on + strand, within MPMX19_00043 at 46.245 kb on - strand, within MPMX19_00043 at 46.245 kb on - strand, within MPMX19_00043 at 46.275 kb on + strand, within MPMX19_00043 at 46.275 kb on + strand, within MPMX19_00043 at 46.276 kb on - strand, within MPMX19_00043 at 46.276 kb on - strand, within MPMX19_00043 at 46.276 kb on - strand, within MPMX19_00043 at 46.415 kb on - strand at 46.417 kb on + strand at 46.417 kb on + strand at 46.418 kb on - strand at 46.418 kb on - strand at 46.418 kb on - strand at 46.418 kb on - strand at 46.418 kb on - strand at 46.418 kb on - strand at 46.418 kb on - strand at 46.418 kb on - strand at 46.418 kb on - strand at 46.418 kb on - strand at 46.418 kb on - strand at 46.418 kb on - strand at 46.468 kb on + strand at 46.506 kb on - strand at 46.530 kb on + strand at 46.530 kb on + strand at 46.530 kb on + strand at 46.530 kb on + strand at 46.530 kb on + strand at 46.530 kb on + strand at 46.530 kb on + strand at 46.530 kb on + strand at 46.530 kb on + strand at 46.531 kb on - strand at 46.531 kb on - strand at 46.540 kb on + strand at 46.540 kb on + strand at 46.540 kb on + strand at 46.540 kb on + strand at 46.540 kb on + strand at 46.540 kb on + strand at 46.541 kb on - strand at 46.541 kb on - strand at 46.541 kb on - strand at 46.541 kb on - strand at 46.541 kb on - strand at 46.541 kb on - strand at 46.541 kb on - strand at 46.541 kb on - strand at 47.304 kb on + strand, within MPMX19_00044 at 47.304 kb on + strand, within MPMX19_00044 at 47.304 kb on + strand, within MPMX19_00044 at 47.305 kb on - strand, within MPMX19_00044 at 47.305 kb on - strand, within MPMX19_00044 at 47.305 kb on - strand, within MPMX19_00044 at 47.305 kb on - strand, within MPMX19_00044 at 47.305 kb on - strand, within MPMX19_00044 at 47.305 kb on - strand, within MPMX19_00044 at 48.172 kb on + strand at 48.172 kb on + strand at 48.172 kb on + strand at 48.172 kb on + strand at 48.172 kb on + strand at 48.173 kb on - strand at 48.173 kb on - strand at 48.173 kb on - strand at 48.173 kb on - strand at 48.173 kb on - strand at 48.173 kb on - strand at 48.173 kb on - strand at 48.173 kb on - strand at 48.173 kb on - strand at 48.173 kb on - strand at 48.173 kb on - strand at 48.246 kb on + strand at 48.246 kb on + strand at 48.246 kb on + strand at 48.246 kb on + strand at 48.246 kb on + strand at 48.247 kb on - strand at 48.247 kb on - strand at 48.247 kb on - strand at 48.247 kb on - strand at 48.247 kb on - strand at 48.247 kb on - strand at 48.247 kb on - strand at 48.247 kb on - strand at 48.247 kb on - strand at 48.249 kb on + strand at 48.249 kb on + strand at 48.249 kb on + strand at 48.249 kb on + strand at 48.249 kb on + strand at 48.249 kb on + strand at 48.249 kb on + strand at 48.250 kb on - strand at 48.250 kb on - strand at 48.250 kb on - strand at 48.250 kb on - strand at 48.250 kb on - strand at 48.250 kb on - strand at 48.250 kb on - strand at 48.250 kb on - strand at 48.250 kb on - strand at 48.250 kb on - strand at 48.250 kb on - strand at 48.250 kb on - strand at 48.250 kb on - strand at 48.250 kb on - strand at 48.250 kb on - strand at 48.250 kb on - strand at 48.250 kb on - strand at 48.250 kb on - strand at 48.250 kb on - strand at 48.250 kb on - strand at 48.250 kb on - strand at 48.250 kb on - strand at 48.250 kb on - strand at 48.250 kb on - strand at 48.250 kb on - strand at 48.250 kb on - strand at 48.250 kb on - strand at 48.250 kb on - strand at 48.250 kb on - strand at 48.250 kb on - strand at 48.250 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 45,690 - MPMX19_00043 0.22 -1.3 45,704 + MPMX19_00043 0.23 +0.3 45,704 + MPMX19_00043 0.23 +0.7 45,704 + MPMX19_00043 0.23 -0.3 45,704 + MPMX19_00043 0.23 +0.1 45,704 + MPMX19_00043 0.23 -1.1 45,704 + MPMX19_00043 0.23 -0.3 45,704 + MPMX19_00043 0.23 -1.5 45,704 + MPMX19_00043 0.23 +0.3 45,704 + MPMX19_00043 0.23 -0.3 45,704 + MPMX19_00043 0.23 +1.5 45,704 + MPMX19_00043 0.23 +1.0 45,704 + MPMX19_00043 0.23 -1.3 45,704 + MPMX19_00043 0.23 -0.3 45,704 + MPMX19_00043 0.23 -1.4 45,704 + MPMX19_00043 0.23 -0.4 45,704 + MPMX19_00043 0.23 +0.5 45,705 - MPMX19_00043 0.23 -1.2 45,705 - MPMX19_00043 0.23 -1.2 45,705 - MPMX19_00043 0.23 -1.6 45,705 - MPMX19_00043 0.23 +0.1 45,705 - MPMX19_00043 0.23 -0.1 45,705 - MPMX19_00043 0.23 -1.5 45,705 - MPMX19_00043 0.23 -0.8 45,705 - MPMX19_00043 0.23 -0.2 45,705 - MPMX19_00043 0.23 +0.9 45,705 - MPMX19_00043 0.23 -0.7 45,705 - MPMX19_00043 0.23 +0.6 45,705 - MPMX19_00043 0.23 +0.3 45,705 - MPMX19_00043 0.23 -0.9 45,705 - MPMX19_00043 0.23 +0.0 45,705 - MPMX19_00043 0.23 +0.5 45,705 - MPMX19_00043 0.23 -0.6 45,705 - MPMX19_00043 0.23 -0.8 45,716 + MPMX19_00043 0.25 -0.5 45,716 + MPMX19_00043 0.25 -0.4 45,716 + MPMX19_00043 0.25 -1.1 45,716 + MPMX19_00043 0.25 +1.7 45,716 + MPMX19_00043 0.25 -0.5 45,716 + MPMX19_00043 0.25 -0.3 45,716 + MPMX19_00043 0.25 -0.1 45,716 + MPMX19_00043 0.25 -2.3 45,716 + MPMX19_00043 0.25 +0.5 45,716 + MPMX19_00043 0.25 -1.4 45,716 + MPMX19_00043 0.25 +0.8 45,717 - MPMX19_00043 0.25 -2.1 45,717 - MPMX19_00043 0.25 -0.1 45,717 - MPMX19_00043 0.25 +0.7 45,717 - MPMX19_00043 0.25 -1.2 45,717 - MPMX19_00043 0.25 -0.1 45,717 - MPMX19_00043 0.25 -0.8 46,244 + MPMX19_00043 0.82 -0.9 46,244 + MPMX19_00043 0.82 +0.1 46,244 + MPMX19_00043 0.82 -0.6 46,245 - MPMX19_00043 0.82 -0.8 46,245 - MPMX19_00043 0.82 -1.6 46,275 + MPMX19_00043 0.85 +0.6 46,275 + MPMX19_00043 0.85 -0.3 46,276 - MPMX19_00043 0.85 -0.1 46,276 - MPMX19_00043 0.85 -0.1 46,276 - MPMX19_00043 0.85 -0.4 46,415 - +0.7 46,417 + -0.1 46,417 + +0.1 46,418 - -1.8 46,418 - -1.1 46,418 - +1.1 46,418 - -0.6 46,418 - -0.4 46,418 - -0.7 46,418 - -1.6 46,418 - +0.2 46,418 - -0.6 46,418 - -1.5 46,418 - -0.1 46,418 - +0.7 46,468 + -0.3 46,506 - -1.8 46,530 + -1.1 46,530 + -0.5 46,530 + -0.3 46,530 + +0.0 46,530 + -2.3 46,530 + -0.4 46,530 + -0.1 46,530 + -0.5 46,530 + -1.6 46,531 - -1.9 46,531 - -0.8 46,540 + -0.1 46,540 + -0.7 46,540 + -0.9 46,540 + -0.5 46,540 + -0.3 46,540 + -0.9 46,541 - -2.1 46,541 - +0.1 46,541 - -0.2 46,541 - -0.5 46,541 - -0.1 46,541 - -0.6 46,541 - +0.2 46,541 - +0.0 47,304 + MPMX19_00044 0.85 -0.3 47,304 + MPMX19_00044 0.85 +1.9 47,304 + MPMX19_00044 0.85 +0.0 47,305 - MPMX19_00044 0.85 +0.3 47,305 - MPMX19_00044 0.85 +0.5 47,305 - MPMX19_00044 0.85 -0.2 47,305 - MPMX19_00044 0.85 -1.0 47,305 - MPMX19_00044 0.85 -0.7 47,305 - MPMX19_00044 0.85 +0.0 48,172 + +0.3 48,172 + -0.3 48,172 + -0.5 48,172 + -0.1 48,172 + +0.5 48,173 - -0.5 48,173 - +0.6 48,173 - -0.6 48,173 - -1.2 48,173 - -1.3 48,173 - -0.1 48,173 - +1.0 48,173 - -0.5 48,173 - +0.9 48,173 - -0.5 48,173 - -0.5 48,246 + -1.9 48,246 + -1.5 48,246 + +0.8 48,246 + -0.9 48,246 + -0.3 48,247 - +0.6 48,247 - -1.3 48,247 - -0.3 48,247 - +1.1 48,247 - -1.3 48,247 - -0.6 48,247 - +0.5 48,247 - -1.1 48,247 - -0.9 48,249 + -0.1 48,249 + -1.6 48,249 + -0.5 48,249 + -1.3 48,249 + -1.1 48,249 + -0.5 48,249 + -1.3 48,250 - -0.3 48,250 - -2.6 48,250 - -0.6 48,250 - -0.1 48,250 - -2.1 48,250 - +0.2 48,250 - +0.3 48,250 - -0.3 48,250 - -0.1 48,250 - +0.1 48,250 - -0.2 48,250 - +1.8 48,250 - -1.1 48,250 - -0.6 48,250 - -2.6 48,250 - -0.4 48,250 - +0.3 48,250 - -0.5 48,250 - -0.5 48,250 - -0.3 48,250 - -0.9 48,250 - +0.5 48,250 - -1.0 48,250 - -1.6 48,250 - +0.5 48,250 - -0.5 48,250 - -1.1 48,250 - -0.0 48,250 - -3.4 48,250 - -0.1 48,250 - -1.5
Or see this region's nucleotide sequence