Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF937 and GFF938 are separated by 167 nucleotides GFF938 and GFF939 are separated by 52 nucleotides GFF939 and GFF940 are separated by 183 nucleotides GFF940 and GFF941 are separated by 6 nucleotides
GFF937 - N-ethylmaleimide reductase, at 173,801 to 174,880
GFF937
GFF938 - Triosephosphate isomerase, at 175,048 to 175,857
GFF938
GFF939 - Protein-export membrane protein SecG, at 175,910 to 176,254
GFF939
GFF940 - NAD(P)H-quinone oxidoreductase subunit 3, at 176,438 to 176,815
GFF940
GFF941 - NADH-quinone oxidoreductase subunit B, at 176,822 to 177,301
GFF941
Position (kb) 175
176 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 174.108 kb on + strand, within GFF937 at 174.109 kb on - strand, within GFF937 at 174.115 kb on + strand, within GFF937 at 174.115 kb on + strand, within GFF937 at 174.116 kb on - strand, within GFF937 at 174.173 kb on - strand, within GFF937 at 174.193 kb on + strand, within GFF937 at 174.193 kb on + strand, within GFF937 at 174.193 kb on + strand, within GFF937 at 174.193 kb on + strand, within GFF937 at 174.193 kb on + strand, within GFF937 at 174.193 kb on + strand, within GFF937 at 174.193 kb on + strand, within GFF937 at 174.193 kb on + strand, within GFF937 at 174.194 kb on - strand, within GFF937 at 174.194 kb on - strand, within GFF937 at 174.197 kb on + strand, within GFF937 at 174.197 kb on + strand, within GFF937 at 174.208 kb on - strand, within GFF937 at 174.215 kb on + strand, within GFF937 at 174.215 kb on + strand, within GFF937 at 174.216 kb on - strand, within GFF937 at 174.216 kb on - strand, within GFF937 at 174.216 kb on - strand, within GFF937 at 174.269 kb on + strand, within GFF937 at 174.269 kb on + strand, within GFF937 at 174.270 kb on - strand, within GFF937 at 174.270 kb on - strand, within GFF937 at 174.270 kb on - strand, within GFF937 at 174.270 kb on - strand, within GFF937 at 174.271 kb on + strand, within GFF937 at 174.271 kb on + strand, within GFF937 at 174.271 kb on + strand, within GFF937 at 174.271 kb on + strand, within GFF937 at 174.272 kb on - strand, within GFF937 at 174.272 kb on - strand, within GFF937 at 174.272 kb on - strand, within GFF937 at 174.315 kb on + strand, within GFF937 at 174.315 kb on + strand, within GFF937 at 174.315 kb on + strand, within GFF937 at 174.315 kb on + strand, within GFF937 at 174.315 kb on + strand, within GFF937 at 174.315 kb on + strand, within GFF937 at 174.316 kb on - strand, within GFF937 at 174.339 kb on - strand, within GFF937 at 174.339 kb on - strand, within GFF937 at 174.345 kb on + strand, within GFF937 at 174.420 kb on + strand, within GFF937 at 174.451 kb on + strand, within GFF937 at 174.451 kb on + strand, within GFF937 at 174.451 kb on + strand, within GFF937 at 174.452 kb on - strand, within GFF937 at 174.452 kb on - strand, within GFF937 at 174.452 kb on - strand, within GFF937 at 174.456 kb on + strand, within GFF937 at 174.457 kb on - strand, within GFF937 at 174.502 kb on + strand, within GFF937 at 174.502 kb on + strand, within GFF937 at 174.502 kb on + strand, within GFF937 at 174.502 kb on + strand, within GFF937 at 174.502 kb on + strand, within GFF937 at 174.502 kb on + strand, within GFF937 at 174.502 kb on + strand, within GFF937 at 174.503 kb on - strand, within GFF937 at 174.503 kb on - strand, within GFF937 at 174.503 kb on - strand, within GFF937 at 174.503 kb on - strand, within GFF937 at 174.503 kb on - strand, within GFF937 at 174.503 kb on - strand, within GFF937 at 174.508 kb on + strand, within GFF937 at 174.509 kb on - strand, within GFF937 at 174.509 kb on - strand, within GFF937 at 174.578 kb on + strand, within GFF937 at 174.579 kb on - strand, within GFF937 at 174.649 kb on + strand, within GFF937 at 174.649 kb on + strand, within GFF937 at 174.650 kb on - strand, within GFF937 at 174.650 kb on - strand, within GFF937 at 174.669 kb on - strand, within GFF937 at 174.669 kb on - strand, within GFF937 at 174.670 kb on + strand, within GFF937 at 174.670 kb on + strand, within GFF937 at 174.670 kb on + strand, within GFF937 at 174.671 kb on - strand, within GFF937 at 174.671 kb on - strand, within GFF937 at 174.686 kb on + strand, within GFF937 at 174.686 kb on + strand, within GFF937 at 174.686 kb on + strand, within GFF937 at 174.743 kb on + strand, within GFF937 at 174.744 kb on - strand, within GFF937 at 174.757 kb on + strand, within GFF937 at 174.851 kb on + strand at 174.851 kb on + strand at 174.851 kb on + strand at 174.851 kb on + strand at 174.851 kb on + strand at 174.851 kb on + strand at 174.860 kb on + strand at 174.884 kb on + strand at 174.894 kb on + strand at 174.895 kb on - strand at 174.923 kb on + strand at 174.924 kb on - strand at 174.924 kb on - strand at 174.935 kb on - strand at 174.963 kb on + strand at 174.982 kb on + strand at 175.006 kb on + strand at 175.007 kb on - strand at 175.008 kb on + strand at 175.008 kb on + strand at 175.008 kb on + strand at 175.008 kb on + strand at 175.008 kb on + strand at 175.008 kb on + strand at 175.008 kb on + strand at 175.008 kb on + strand at 175.008 kb on + strand at 175.008 kb on + strand at 175.008 kb on + strand at 175.008 kb on + strand at 175.008 kb on + strand at 175.008 kb on + strand at 175.008 kb on + strand at 175.008 kb on + strand at 175.008 kb on + strand at 175.008 kb on + strand at 175.008 kb on + strand at 175.008 kb on + strand at 175.009 kb on - strand at 175.009 kb on - strand at 175.009 kb on - strand at 175.009 kb on - strand at 175.009 kb on - strand at 175.009 kb on - strand at 175.009 kb on - strand at 175.009 kb on - strand at 175.009 kb on - strand at 175.010 kb on + strand at 175.010 kb on + strand at 175.010 kb on + strand at 175.010 kb on + strand at 175.010 kb on + strand at 175.010 kb on + strand at 175.010 kb on + strand at 175.010 kb on + strand at 175.010 kb on + strand at 175.010 kb on + strand at 175.010 kb on + strand at 175.010 kb on + strand at 175.010 kb on + strand at 175.010 kb on + strand at 175.011 kb on - strand at 175.011 kb on - strand at 175.011 kb on - strand at 175.011 kb on - strand at 175.011 kb on - strand at 175.011 kb on - strand at 175.011 kb on - strand at 175.011 kb on - strand at 175.011 kb on - strand at 175.011 kb on - strand at 175.039 kb on + strand at 175.039 kb on + strand at 175.040 kb on - strand at 175.053 kb on + strand at 175.054 kb on - strand at 175.074 kb on + strand at 175.074 kb on + strand at 175.074 kb on + strand at 175.143 kb on + strand, within GFF938 at 175.143 kb on + strand, within GFF938 at 175.166 kb on - strand, within GFF938 at 175.166 kb on - strand, within GFF938 at 175.188 kb on + strand, within GFF938 at 175.189 kb on - strand, within GFF938 at 175.219 kb on + strand, within GFF938 at 175.294 kb on + strand, within GFF938 at 175.310 kb on - strand, within GFF938 at 175.310 kb on - strand, within GFF938 at 175.322 kb on + strand, within GFF938 at 175.323 kb on - strand, within GFF938 at 175.323 kb on - strand, within GFF938 at 175.357 kb on + strand, within GFF938 at 175.357 kb on + strand, within GFF938 at 175.357 kb on + strand, within GFF938 at 175.357 kb on + strand, within GFF938 at 175.357 kb on + strand, within GFF938 at 175.357 kb on + strand, within GFF938 at 175.358 kb on - strand, within GFF938 at 175.365 kb on + strand, within GFF938 at 175.366 kb on - strand, within GFF938 at 175.366 kb on - strand, within GFF938 at 175.393 kb on + strand, within GFF938 at 175.393 kb on + strand, within GFF938 at 175.451 kb on + strand, within GFF938 at 175.451 kb on + strand, within GFF938 at 175.451 kb on + strand, within GFF938 at 175.451 kb on + strand, within GFF938 at 175.458 kb on + strand, within GFF938 at 175.458 kb on + strand, within GFF938 at 175.458 kb on + strand, within GFF938 at 175.459 kb on - strand, within GFF938 at 175.463 kb on + strand, within GFF938 at 175.463 kb on + strand, within GFF938 at 175.463 kb on + strand, within GFF938 at 175.464 kb on - strand, within GFF938 at 175.464 kb on - strand, within GFF938 at 175.464 kb on - strand, within GFF938 at 175.547 kb on + strand, within GFF938 at 175.586 kb on - strand, within GFF938 at 175.586 kb on - strand, within GFF938 at 175.586 kb on - strand, within GFF938 at 175.656 kb on + strand, within GFF938 at 175.704 kb on - strand, within GFF938 at 175.815 kb on + strand at 175.823 kb on + strand at 175.823 kb on + strand at 175.823 kb on + strand at 175.845 kb on + strand at 175.845 kb on + strand at 175.855 kb on + strand at 175.855 kb on + strand at 175.855 kb on + strand at 175.855 kb on + strand at 175.855 kb on + strand at 175.859 kb on + strand at 175.886 kb on + strand at 175.889 kb on + strand at 176.242 kb on + strand at 176.242 kb on + strand at 176.242 kb on + strand at 176.242 kb on + strand at 176.248 kb on + strand at 176.252 kb on + strand at 176.252 kb on + strand at 176.252 kb on + strand at 176.252 kb on + strand at 176.348 kb on + strand at 176.349 kb on - strand at 176.381 kb on + strand at 176.381 kb on + strand at 176.381 kb on + strand at 176.381 kb on + strand at 176.381 kb on + strand at 176.381 kb on + strand at 176.381 kb on + strand at 176.426 kb on + strand at 176.839 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 174,108 + GFF937 0.28 -0.8 174,109 - GFF937 0.29 -0.3 174,115 + GFF937 0.29 +1.0 174,115 + GFF937 0.29 -0.7 174,116 - GFF937 0.29 -0.0 174,173 - GFF937 0.34 -1.5 174,193 + GFF937 0.36 +0.2 174,193 + GFF937 0.36 -0.8 174,193 + GFF937 0.36 -0.0 174,193 + GFF937 0.36 -1.4 174,193 + GFF937 0.36 -1.0 174,193 + GFF937 0.36 -0.0 174,193 + GFF937 0.36 +0.5 174,193 + GFF937 0.36 -1.4 174,194 - GFF937 0.36 -0.7 174,194 - GFF937 0.36 +0.6 174,197 + GFF937 0.37 -0.6 174,197 + GFF937 0.37 +0.7 174,208 - GFF937 0.38 -0.5 174,215 + GFF937 0.38 +0.6 174,215 + GFF937 0.38 -0.0 174,216 - GFF937 0.38 -1.4 174,216 - GFF937 0.38 +0.3 174,216 - GFF937 0.38 -1.4 174,269 + GFF937 0.43 -0.3 174,269 + GFF937 0.43 +0.1 174,270 - GFF937 0.43 -0.8 174,270 - GFF937 0.43 -0.1 174,270 - GFF937 0.43 -0.0 174,270 - GFF937 0.43 -0.6 174,271 + GFF937 0.44 -1.8 174,271 + GFF937 0.44 -1.4 174,271 + GFF937 0.44 -0.3 174,271 + GFF937 0.44 +0.2 174,272 - GFF937 0.44 +1.5 174,272 - GFF937 0.44 -1.0 174,272 - GFF937 0.44 -0.8 174,315 + GFF937 0.48 -0.3 174,315 + GFF937 0.48 -0.6 174,315 + GFF937 0.48 -0.3 174,315 + GFF937 0.48 +0.6 174,315 + GFF937 0.48 -2.7 174,315 + GFF937 0.48 -0.4 174,316 - GFF937 0.48 -0.3 174,339 - GFF937 0.50 +1.8 174,339 - GFF937 0.50 +0.2 174,345 + GFF937 0.50 -0.8 174,420 + GFF937 0.57 +0.1 174,451 + GFF937 0.60 +0.8 174,451 + GFF937 0.60 +0.3 174,451 + GFF937 0.60 -1.4 174,452 - GFF937 0.60 +0.2 174,452 - GFF937 0.60 +0.1 174,452 - GFF937 0.60 -0.4 174,456 + GFF937 0.61 -0.6 174,457 - GFF937 0.61 -0.4 174,502 + GFF937 0.65 -0.9 174,502 + GFF937 0.65 +0.6 174,502 + GFF937 0.65 -0.9 174,502 + GFF937 0.65 -0.0 174,502 + GFF937 0.65 +0.6 174,502 + GFF937 0.65 +0.1 174,502 + GFF937 0.65 +0.5 174,503 - GFF937 0.65 -1.1 174,503 - GFF937 0.65 -0.0 174,503 - GFF937 0.65 -0.8 174,503 - GFF937 0.65 -1.0 174,503 - GFF937 0.65 -0.3 174,503 - GFF937 0.65 -1.8 174,508 + GFF937 0.65 -1.2 174,509 - GFF937 0.66 -1.1 174,509 - GFF937 0.66 -0.0 174,578 + GFF937 0.72 +0.2 174,579 - GFF937 0.72 -0.5 174,649 + GFF937 0.79 -0.6 174,649 + GFF937 0.79 -0.3 174,650 - GFF937 0.79 -1.0 174,650 - GFF937 0.79 +0.6 174,669 - GFF937 0.80 -2.2 174,669 - GFF937 0.80 +0.6 174,670 + GFF937 0.80 -0.7 174,670 + GFF937 0.80 -1.8 174,670 + GFF937 0.80 -1.4 174,671 - GFF937 0.81 -0.4 174,671 - GFF937 0.81 -1.8 174,686 + GFF937 0.82 -1.1 174,686 + GFF937 0.82 -0.4 174,686 + GFF937 0.82 -0.2 174,743 + GFF937 0.87 +0.2 174,744 - GFF937 0.87 -0.0 174,757 + GFF937 0.89 +0.2 174,851 + -0.8 174,851 + -0.0 174,851 + -0.4 174,851 + +0.6 174,851 + -0.0 174,851 + +0.2 174,860 + -0.2 174,884 + -0.6 174,894 + +0.4 174,895 - -0.2 174,923 + -0.0 174,924 - +1.0 174,924 - +0.2 174,935 - -0.4 174,963 + -0.4 174,982 + +1.3 175,006 + +0.2 175,007 - -0.6 175,008 + -0.0 175,008 + -0.7 175,008 + -0.0 175,008 + -2.0 175,008 + +0.6 175,008 + -1.4 175,008 + +0.3 175,008 + -0.8 175,008 + -0.6 175,008 + -1.3 175,008 + -0.3 175,008 + -0.6 175,008 + -0.8 175,008 + -0.2 175,008 + -1.3 175,008 + -1.4 175,008 + -0.4 175,008 + +0.3 175,008 + -0.7 175,008 + -0.3 175,009 - -0.0 175,009 - +0.2 175,009 - -0.6 175,009 - -0.6 175,009 - -0.2 175,009 - +0.2 175,009 - -0.0 175,009 - -0.8 175,009 - -1.2 175,010 + -0.5 175,010 + -0.6 175,010 + -0.9 175,010 + -1.8 175,010 + -0.4 175,010 + +0.1 175,010 + -0.0 175,010 + -2.4 175,010 + +0.6 175,010 + -0.7 175,010 + -1.3 175,010 + -0.1 175,010 + +0.4 175,010 + +0.8 175,011 - -0.0 175,011 - -0.4 175,011 - +0.3 175,011 - -1.3 175,011 - -1.0 175,011 - -0.5 175,011 - -1.6 175,011 - +0.5 175,011 - -0.1 175,011 - +0.1 175,039 + -0.7 175,039 + -0.4 175,040 - -0.0 175,053 + -0.0 175,054 - -0.6 175,074 + -0.3 175,074 + -0.6 175,074 + -1.7 175,143 + GFF938 0.12 -1.2 175,143 + GFF938 0.12 -1.4 175,166 - GFF938 0.15 -1.5 175,166 - GFF938 0.15 -1.4 175,188 + GFF938 0.17 -1.0 175,189 - GFF938 0.17 -2.9 175,219 + GFF938 0.21 -1.0 175,294 + GFF938 0.30 -0.7 175,310 - GFF938 0.32 -0.0 175,310 - GFF938 0.32 -0.8 175,322 + GFF938 0.34 -0.6 175,323 - GFF938 0.34 -2.5 175,323 - GFF938 0.34 -2.4 175,357 + GFF938 0.38 -1.0 175,357 + GFF938 0.38 -1.0 175,357 + GFF938 0.38 -0.4 175,357 + GFF938 0.38 -1.0 175,357 + GFF938 0.38 -1.0 175,357 + GFF938 0.38 -1.4 175,358 - GFF938 0.38 -0.4 175,365 + GFF938 0.39 -1.4 175,366 - GFF938 0.39 -1.0 175,366 - GFF938 0.39 -1.5 175,393 + GFF938 0.43 -1.6 175,393 + GFF938 0.43 -0.6 175,451 + GFF938 0.50 -1.4 175,451 + GFF938 0.50 +0.5 175,451 + GFF938 0.50 +0.2 175,451 + GFF938 0.50 -0.1 175,458 + GFF938 0.51 -1.0 175,458 + GFF938 0.51 -1.0 175,458 + GFF938 0.51 -1.6 175,459 - GFF938 0.51 -1.9 175,463 + GFF938 0.51 +0.6 175,463 + GFF938 0.51 -0.2 175,463 + GFF938 0.51 -0.3 175,464 - GFF938 0.51 -1.4 175,464 - GFF938 0.51 -1.4 175,464 - GFF938 0.51 -1.1 175,547 + GFF938 0.62 -1.0 175,586 - GFF938 0.66 -1.0 175,586 - GFF938 0.66 -1.6 175,586 - GFF938 0.66 -1.4 175,656 + GFF938 0.75 -1.7 175,704 - GFF938 0.81 -1.5 175,815 + -1.4 175,823 + -1.6 175,823 + +0.6 175,823 + -1.0 175,845 + -0.4 175,845 + -0.8 175,855 + -1.4 175,855 + -0.4 175,855 + -0.7 175,855 + -0.6 175,855 + -0.0 175,859 + -0.1 175,886 + -0.0 175,889 + +0.2 176,242 + -1.2 176,242 + -0.0 176,242 + -0.7 176,242 + -1.0 176,248 + -0.6 176,252 + -1.2 176,252 + -2.1 176,252 + -0.0 176,252 + -0.5 176,348 + +0.2 176,349 - -0.0 176,381 + +0.4 176,381 + -0.4 176,381 + -0.4 176,381 + -1.0 176,381 + -1.0 176,381 + -0.7 176,381 + +0.6 176,426 + -0.5 176,839 - -0.4
Or see this region's nucleotide sequence