Strain Fitness in Methylophilus sp. DMC18 around GFF842

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF841 and GFF842 are separated by 84 nucleotidesGFF842 and GFF843 overlap by 11 nucleotides GFF841 - Protein RecA, at 78,536 to 79,564 GFF841 GFF842 - Regulatory protein RecX, at 79,649 to 80,104 GFF842 GFF843 - Alanine--tRNA ligase, at 80,094 to 82,730 GFF843 Position (kb) 79 80 81Strain fitness (log2 ratio) -2 -1 0 1at 79.187 kb on + strand, within GFF841at 79.300 kb on + strand, within GFF841at 79.321 kb on + strand, within GFF841at 79.321 kb on + strand, within GFF841at 79.321 kb on + strand, within GFF841at 79.321 kb on + strand, within GFF841at 79.321 kb on + strand, within GFF841at 79.321 kb on + strand, within GFF841at 79.321 kb on + strand, within GFF841at 79.321 kb on + strand, within GFF841at 79.325 kb on + strand, within GFF841at 79.408 kb on + strand, within GFF841at 79.412 kb on + strand, within GFF841at 79.412 kb on + strand, within GFF841at 79.412 kb on + strand, within GFF841at 79.412 kb on + strand, within GFF841at 79.412 kb on + strand, within GFF841at 79.412 kb on + strand, within GFF841at 79.412 kb on + strand, within GFF841at 79.531 kb on + strandat 79.562 kb on + strandat 79.671 kb on + strandat 79.686 kb on + strandat 79.686 kb on + strandat 79.691 kb on + strandat 79.691 kb on + strandat 79.709 kb on + strand, within GFF842at 79.745 kb on + strand, within GFF842at 79.846 kb on + strand, within GFF842at 79.884 kb on + strand, within GFF842at 79.884 kb on + strand, within GFF842at 80.065 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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79,187 + GFF841 0.63 -0.6
79,300 + GFF841 0.74 -0.6
79,321 + GFF841 0.76 -1.2
79,321 + GFF841 0.76 -1.0
79,321 + GFF841 0.76 -1.0
79,321 + GFF841 0.76 +0.6
79,321 + GFF841 0.76 -1.2
79,321 + GFF841 0.76 -1.8
79,321 + GFF841 0.76 -1.5
79,321 + GFF841 0.76 -1.0
79,325 + GFF841 0.77 -0.9
79,408 + GFF841 0.85 -0.0
79,412 + GFF841 0.85 -0.6
79,412 + GFF841 0.85 -1.2
79,412 + GFF841 0.85 -1.4
79,412 + GFF841 0.85 -0.0
79,412 + GFF841 0.85 -0.6
79,412 + GFF841 0.85 -0.8
79,412 + GFF841 0.85 -1.4
79,531 + -1.4
79,562 + +0.7
79,671 + +0.6
79,686 + -0.2
79,686 + +0.3
79,691 + -0.0
79,691 + -1.0
79,709 + GFF842 0.13 -1.6
79,745 + GFF842 0.21 -1.5
79,846 + GFF842 0.43 -0.0
79,884 + GFF842 0.52 -0.5
79,884 + GFF842 0.52 -1.0
80,065 + -1.7

Or see this region's nucleotide sequence