Strain Fitness in Methylophilus sp. DMC18 around GFF808

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF806 and GFF807 overlap by 1 nucleotidesGFF807 and GFF808 are separated by 181 nucleotidesGFF808 and GFF809 are separated by 88 nucleotides GFF806 - Sulfide dehydrogenase [flavocytochrome c] flavoprotein chain, at 44,915 to 46,207 GFF806 GFF807 - Cytochrome subunit of sulfide dehydrogenase, at 46,207 to 46,557 GFF807 GFF808 - hypothetical protein, at 46,739 to 47,224 GFF808 GFF809 - Phosphoribosylformylglycinamidine synthase, at 47,313 to 51,224 GFF809 Position (kb) 46 47 48Strain fitness (log2 ratio) -2 -1 0 1at 45.753 kb on + strand, within GFF806at 45.793 kb on - strand, within GFF806at 45.818 kb on + strand, within GFF806at 45.819 kb on - strand, within GFF806at 45.819 kb on - strand, within GFF806at 45.860 kb on + strand, within GFF806at 45.897 kb on + strand, within GFF806at 45.897 kb on + strand, within GFF806at 45.898 kb on - strand, within GFF806at 45.901 kb on + strand, within GFF806at 45.902 kb on - strand, within GFF806at 45.902 kb on - strand, within GFF806at 45.964 kb on + strand, within GFF806at 45.964 kb on + strand, within GFF806at 45.965 kb on - strand, within GFF806at 45.965 kb on - strand, within GFF806at 45.965 kb on - strand, within GFF806at 45.998 kb on - strand, within GFF806at 46.026 kb on + strand, within GFF806at 46.027 kb on - strand, within GFF806at 46.119 kb on + strandat 46.119 kb on + strandat 46.119 kb on + strandat 46.120 kb on - strandat 46.154 kb on - strandat 46.154 kb on - strandat 46.209 kb on - strandat 46.275 kb on - strand, within GFF807at 46.275 kb on - strand, within GFF807at 46.378 kb on - strand, within GFF807at 46.382 kb on + strand, within GFF807at 46.383 kb on - strand, within GFF807at 46.523 kb on + strandat 46.523 kb on + strandat 46.524 kb on - strandat 46.524 kb on - strandat 46.527 kb on + strandat 46.527 kb on + strandat 46.527 kb on + strandat 46.527 kb on + strandat 46.531 kb on + strandat 46.531 kb on + strandat 46.531 kb on + strandat 46.559 kb on + strandat 46.559 kb on + strandat 46.712 kb on - strandat 46.741 kb on - strandat 46.741 kb on - strandat 46.741 kb on - strandat 46.741 kb on - strandat 46.782 kb on - strandat 46.782 kb on - strandat 46.794 kb on - strand, within GFF808at 46.800 kb on - strand, within GFF808at 46.869 kb on - strand, within GFF808at 46.893 kb on + strand, within GFF808at 46.893 kb on + strand, within GFF808at 46.894 kb on - strand, within GFF808at 46.894 kb on - strand, within GFF808at 46.919 kb on - strand, within GFF808at 46.930 kb on + strand, within GFF808at 46.930 kb on + strand, within GFF808at 46.943 kb on - strand, within GFF808at 46.965 kb on + strand, within GFF808at 46.965 kb on + strand, within GFF808at 46.965 kb on + strand, within GFF808at 46.965 kb on + strand, within GFF808at 46.965 kb on + strand, within GFF808at 46.965 kb on + strand, within GFF808at 46.966 kb on - strand, within GFF808at 46.966 kb on - strand, within GFF808at 46.966 kb on - strand, within GFF808at 46.966 kb on - strand, within GFF808at 46.966 kb on - strand, within GFF808at 46.966 kb on - strand, within GFF808at 46.966 kb on - strand, within GFF808at 46.966 kb on - strand, within GFF808at 46.966 kb on - strand, within GFF808at 46.966 kb on - strand, within GFF808at 46.966 kb on - strand, within GFF808at 46.995 kb on + strand, within GFF808at 46.996 kb on - strand, within GFF808at 47.111 kb on - strand, within GFF808at 47.111 kb on - strand, within GFF808at 47.143 kb on + strand, within GFF808at 47.143 kb on + strand, within GFF808at 47.144 kb on - strand, within GFF808at 47.144 kb on - strand, within GFF808at 47.145 kb on + strand, within GFF808at 47.145 kb on + strand, within GFF808at 47.145 kb on + strand, within GFF808at 47.145 kb on + strand, within GFF808at 47.145 kb on + strand, within GFF808at 47.146 kb on - strand, within GFF808at 47.146 kb on - strand, within GFF808at 47.146 kb on - strand, within GFF808at 47.146 kb on - strand, within GFF808at 47.146 kb on - strand, within GFF808at 47.146 kb on - strand, within GFF808at 47.146 kb on - strand, within GFF808at 47.146 kb on - strand, within GFF808at 47.146 kb on - strand, within GFF808at 47.212 kb on + strandat 47.225 kb on - strandat 47.225 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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45,753 + GFF806 0.65 -1.6
45,793 - GFF806 0.68 +1.0
45,818 + GFF806 0.70 -0.6
45,819 - GFF806 0.70 +0.2
45,819 - GFF806 0.70 +0.3
45,860 + GFF806 0.73 +1.0
45,897 + GFF806 0.76 -0.2
45,897 + GFF806 0.76 -0.4
45,898 - GFF806 0.76 -1.5
45,901 + GFF806 0.76 -1.6
45,902 - GFF806 0.76 +0.7
45,902 - GFF806 0.76 -0.3
45,964 + GFF806 0.81 -0.2
45,964 + GFF806 0.81 -1.4
45,965 - GFF806 0.81 -0.3
45,965 - GFF806 0.81 +1.0
45,965 - GFF806 0.81 +0.0
45,998 - GFF806 0.84 +0.4
46,026 + GFF806 0.86 +1.2
46,027 - GFF806 0.86 -0.8
46,119 + -1.4
46,119 + -1.4
46,119 + -2.4
46,120 - +0.3
46,154 - -0.3
46,154 - -0.8
46,209 - +0.2
46,275 - GFF807 0.19 +0.2
46,275 - GFF807 0.19 -1.2
46,378 - GFF807 0.49 -2.1
46,382 + GFF807 0.50 -0.0
46,383 - GFF807 0.50 -0.5
46,523 + -0.1
46,523 + -2.0
46,524 - -0.3
46,524 - -0.5
46,527 + -1.2
46,527 + -0.0
46,527 + -0.0
46,527 + -0.0
46,531 + +1.2
46,531 + -1.4
46,531 + -1.4
46,559 + -0.5
46,559 + +0.2
46,712 - +0.3
46,741 - -1.1
46,741 - +1.1
46,741 - -2.7
46,741 - -1.6
46,782 - +0.6
46,782 - -0.1
46,794 - GFF808 0.11 -0.7
46,800 - GFF808 0.13 -0.0
46,869 - GFF808 0.27 -0.0
46,893 + GFF808 0.32 -1.4
46,893 + GFF808 0.32 +0.6
46,894 - GFF808 0.32 -1.0
46,894 - GFF808 0.32 -2.6
46,919 - GFF808 0.37 -0.8
46,930 + GFF808 0.39 -1.0
46,930 + GFF808 0.39 -1.6
46,943 - GFF808 0.42 -0.6
46,965 + GFF808 0.47 -0.0
46,965 + GFF808 0.47 -2.0
46,965 + GFF808 0.47 +0.2
46,965 + GFF808 0.47 -1.0
46,965 + GFF808 0.47 -0.0
46,965 + GFF808 0.47 -0.8
46,966 - GFF808 0.47 -0.3
46,966 - GFF808 0.47 -0.8
46,966 - GFF808 0.47 -1.0
46,966 - GFF808 0.47 -1.7
46,966 - GFF808 0.47 -2.2
46,966 - GFF808 0.47 -1.0
46,966 - GFF808 0.47 -0.3
46,966 - GFF808 0.47 -0.4
46,966 - GFF808 0.47 -0.3
46,966 - GFF808 0.47 -2.3
46,966 - GFF808 0.47 -0.7
46,995 + GFF808 0.53 -0.0
46,996 - GFF808 0.53 +0.2
47,111 - GFF808 0.77 -0.4
47,111 - GFF808 0.77 -0.8
47,143 + GFF808 0.83 -1.6
47,143 + GFF808 0.83 -1.0
47,144 - GFF808 0.83 -1.5
47,144 - GFF808 0.83 -1.1
47,145 + GFF808 0.84 -1.4
47,145 + GFF808 0.84 -1.0
47,145 + GFF808 0.84 -0.2
47,145 + GFF808 0.84 -0.4
47,145 + GFF808 0.84 -1.8
47,146 - GFF808 0.84 -1.0
47,146 - GFF808 0.84 -1.6
47,146 - GFF808 0.84 -0.0
47,146 - GFF808 0.84 +0.4
47,146 - GFF808 0.84 -0.4
47,146 - GFF808 0.84 -0.4
47,146 - GFF808 0.84 -0.0
47,146 - GFF808 0.84 -0.0
47,146 - GFF808 0.84 -1.0
47,212 + -0.0
47,225 - -0.8
47,225 - +0.6

Or see this region's nucleotide sequence