Strain Fitness in Methylophilus sp. DMC18 around GFF788

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF787 and GFF788 are separated by 140 nucleotidesGFF788 and GFF789 are separated by 160 nucleotides GFF787 - Succinate--CoA ligase [ADP-forming] subunit beta, at 26,017 to 27,186 GFF787 GFF788 - hypothetical protein, at 27,327 to 28,097 GFF788 GFF789 - hypothetical protein, at 28,258 to 29,097 GFF789 Position (kb) 27 28 29Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 27.211 kb on - strandat 27.211 kb on - strandat 27.211 kb on - strandat 27.291 kb on + strandat 27.291 kb on + strandat 27.291 kb on + strandat 27.292 kb on - strandat 27.292 kb on - strandat 27.292 kb on - strandat 27.292 kb on - strandat 27.292 kb on - strandat 27.292 kb on - strandat 27.292 kb on - strandat 27.296 kb on - strandat 27.329 kb on - strandat 27.329 kb on - strandat 27.330 kb on + strandat 27.330 kb on + strandat 27.330 kb on + strandat 27.330 kb on + strandat 27.330 kb on + strandat 27.330 kb on + strandat 27.330 kb on + strandat 27.331 kb on - strandat 27.331 kb on - strandat 27.356 kb on - strandat 27.391 kb on + strandat 27.392 kb on - strandat 27.392 kb on - strandat 27.412 kb on + strand, within GFF788at 27.412 kb on + strand, within GFF788at 27.412 kb on + strand, within GFF788at 27.413 kb on - strand, within GFF788at 27.413 kb on - strand, within GFF788at 27.413 kb on - strand, within GFF788at 27.506 kb on + strand, within GFF788at 27.507 kb on - strand, within GFF788at 27.624 kb on + strand, within GFF788at 27.624 kb on + strand, within GFF788at 27.624 kb on + strand, within GFF788at 27.624 kb on + strand, within GFF788at 27.624 kb on + strand, within GFF788at 27.624 kb on + strand, within GFF788at 27.624 kb on + strand, within GFF788at 27.624 kb on + strand, within GFF788at 27.624 kb on + strand, within GFF788at 27.625 kb on - strand, within GFF788at 27.625 kb on - strand, within GFF788at 27.625 kb on - strand, within GFF788at 27.625 kb on - strand, within GFF788at 27.625 kb on - strand, within GFF788at 27.625 kb on - strand, within GFF788at 27.625 kb on - strand, within GFF788at 27.625 kb on - strand, within GFF788at 27.625 kb on - strand, within GFF788at 27.625 kb on - strand, within GFF788at 27.626 kb on + strand, within GFF788at 27.627 kb on - strand, within GFF788at 27.627 kb on - strand, within GFF788at 27.627 kb on - strand, within GFF788at 27.627 kb on - strand, within GFF788at 27.686 kb on + strand, within GFF788at 27.686 kb on + strand, within GFF788at 27.686 kb on + strand, within GFF788at 27.686 kb on + strand, within GFF788at 27.687 kb on - strand, within GFF788at 27.687 kb on - strand, within GFF788at 27.687 kb on - strand, within GFF788at 27.687 kb on - strand, within GFF788at 27.697 kb on + strand, within GFF788at 27.697 kb on + strand, within GFF788at 27.697 kb on + strand, within GFF788at 27.697 kb on + strand, within GFF788at 27.697 kb on + strand, within GFF788at 27.698 kb on - strand, within GFF788at 27.698 kb on - strand, within GFF788at 27.698 kb on - strand, within GFF788at 27.698 kb on - strand, within GFF788at 27.698 kb on - strand, within GFF788at 27.698 kb on - strand, within GFF788at 27.698 kb on - strand, within GFF788at 27.698 kb on - strand, within GFF788at 27.698 kb on - strand, within GFF788at 27.705 kb on - strand, within GFF788at 27.904 kb on + strand, within GFF788at 27.904 kb on + strand, within GFF788at 27.905 kb on - strand, within GFF788at 27.905 kb on - strand, within GFF788at 27.905 kb on - strand, within GFF788at 27.905 kb on - strand, within GFF788at 27.907 kb on + strand, within GFF788at 27.907 kb on + strand, within GFF788at 27.907 kb on + strand, within GFF788at 27.907 kb on + strand, within GFF788at 27.908 kb on - strand, within GFF788at 27.908 kb on - strand, within GFF788at 27.908 kb on - strand, within GFF788at 27.908 kb on - strand, within GFF788at 27.913 kb on + strand, within GFF788at 27.914 kb on - strand, within GFF788at 27.973 kb on - strand, within GFF788at 27.973 kb on - strand, within GFF788at 27.973 kb on - strand, within GFF788at 27.973 kb on - strand, within GFF788at 27.989 kb on + strand, within GFF788at 27.989 kb on + strand, within GFF788at 27.990 kb on - strand, within GFF788at 28.038 kb on + strandat 28.038 kb on - strandat 28.038 kb on - strandat 28.100 kb on + strandat 28.100 kb on + strandat 28.101 kb on - strandat 28.101 kb on - strandat 28.148 kb on - strandat 28.148 kb on - strandat 28.148 kb on - strandat 28.179 kb on + strandat 28.179 kb on + strandat 28.180 kb on - strandat 28.180 kb on - strandat 28.199 kb on + strandat 28.199 kb on + strandat 28.199 kb on + strandat 28.199 kb on + strandat 28.200 kb on - strandat 28.200 kb on - strandat 28.225 kb on + strandat 28.225 kb on + strandat 28.225 kb on + strandat 28.225 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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27,211 - -1.0
27,211 - -1.4
27,211 - -1.0
27,291 + -1.4
27,291 + +0.2
27,291 + -0.8
27,292 - -0.8
27,292 - -0.0
27,292 - +0.7
27,292 - -0.5
27,292 - -0.6
27,292 - -0.8
27,292 - -0.4
27,296 - -0.2
27,329 - +0.8
27,329 - -1.7
27,330 + -0.3
27,330 + -0.3
27,330 + +0.6
27,330 + -1.4
27,330 + +0.6
27,330 + -1.3
27,330 + -0.4
27,331 - -1.0
27,331 - -0.8
27,356 - +0.1
27,391 + -1.4
27,392 - -1.0
27,392 - -1.8
27,412 + GFF788 0.11 -1.0
27,412 + GFF788 0.11 -0.3
27,412 + GFF788 0.11 -1.3
27,413 - GFF788 0.11 -1.0
27,413 - GFF788 0.11 -0.3
27,413 - GFF788 0.11 -0.0
27,506 + GFF788 0.23 -1.4
27,507 - GFF788 0.23 -1.0
27,624 + GFF788 0.39 +0.4
27,624 + GFF788 0.39 -0.3
27,624 + GFF788 0.39 -0.2
27,624 + GFF788 0.39 -1.4
27,624 + GFF788 0.39 -1.2
27,624 + GFF788 0.39 +0.6
27,624 + GFF788 0.39 -0.8
27,624 + GFF788 0.39 +0.3
27,624 + GFF788 0.39 -1.0
27,625 - GFF788 0.39 -1.0
27,625 - GFF788 0.39 -0.2
27,625 - GFF788 0.39 +0.0
27,625 - GFF788 0.39 -0.9
27,625 - GFF788 0.39 -0.1
27,625 - GFF788 0.39 -0.8
27,625 - GFF788 0.39 -0.5
27,625 - GFF788 0.39 -1.3
27,625 - GFF788 0.39 -0.6
27,625 - GFF788 0.39 -1.4
27,626 + GFF788 0.39 -1.0
27,627 - GFF788 0.39 -0.9
27,627 - GFF788 0.39 -0.9
27,627 - GFF788 0.39 -0.3
27,627 - GFF788 0.39 +0.1
27,686 + GFF788 0.47 -0.4
27,686 + GFF788 0.47 +0.4
27,686 + GFF788 0.47 -3.0
27,686 + GFF788 0.47 -0.3
27,687 - GFF788 0.47 -0.0
27,687 - GFF788 0.47 -1.0
27,687 - GFF788 0.47 -0.3
27,687 - GFF788 0.47 -1.1
27,697 + GFF788 0.48 -0.8
27,697 + GFF788 0.48 -0.0
27,697 + GFF788 0.48 +0.6
27,697 + GFF788 0.48 -1.4
27,697 + GFF788 0.48 -1.0
27,698 - GFF788 0.48 -0.4
27,698 - GFF788 0.48 -1.6
27,698 - GFF788 0.48 -0.2
27,698 - GFF788 0.48 -1.1
27,698 - GFF788 0.48 -0.5
27,698 - GFF788 0.48 -0.4
27,698 - GFF788 0.48 -0.6
27,698 - GFF788 0.48 -0.8
27,698 - GFF788 0.48 -0.0
27,705 - GFF788 0.49 -1.7
27,904 + GFF788 0.75 -1.0
27,904 + GFF788 0.75 -0.0
27,905 - GFF788 0.75 -0.0
27,905 - GFF788 0.75 -0.3
27,905 - GFF788 0.75 -1.2
27,905 - GFF788 0.75 -1.4
27,907 + GFF788 0.75 -0.4
27,907 + GFF788 0.75 -1.2
27,907 + GFF788 0.75 -0.1
27,907 + GFF788 0.75 -1.0
27,908 - GFF788 0.75 +0.3
27,908 - GFF788 0.75 -0.4
27,908 - GFF788 0.75 -1.6
27,908 - GFF788 0.75 -1.0
27,913 + GFF788 0.76 -1.4
27,914 - GFF788 0.76 -0.4
27,973 - GFF788 0.84 -0.4
27,973 - GFF788 0.84 -0.6
27,973 - GFF788 0.84 -2.2
27,973 - GFF788 0.84 -1.0
27,989 + GFF788 0.86 -0.7
27,989 + GFF788 0.86 -2.2
27,990 - GFF788 0.86 -2.2
28,038 + -1.1
28,038 - -1.8
28,038 - -0.0
28,100 + -0.8
28,100 + -0.3
28,101 - -0.0
28,101 - -1.1
28,148 - -1.6
28,148 - -1.0
28,148 - -1.0
28,179 + -0.8
28,179 + -1.5
28,180 - +0.6
28,180 - +0.4
28,199 + -0.2
28,199 + +2.0
28,199 + -0.0
28,199 + -1.2
28,200 - -0.7
28,200 - -0.3
28,225 + +0.6
28,225 + -0.4
28,225 + +0.2
28,225 + +0.3

Or see this region's nucleotide sequence