Strain Fitness in Methylophilus sp. DMC18 around GFF73

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF72 and GFF73 are separated by 21 nucleotidesGFF73 and GFF74 are separated by 107 nucleotidesGFF74 and GFF75 are separated by 122 nucleotides GFF72 - Serine hydroxymethyltransferase, at 82,400 to 83,647 GFF72 GFF73 - Transcriptional repressor NrdR, at 83,669 to 84,118 GFF73 GFF74 - hypothetical protein, at 84,226 to 84,603 GFF74 GFF75 - Riboflavin biosynthesis protein RibD, at 84,726 to 85,817 GFF75 Position (kb) 83 84 85Strain fitness (log2 ratio) -3 -2 -1 0 1at 83.636 kb on + strandat 83.636 kb on + strandat 83.636 kb on + strandat 83.636 kb on + strandat 83.641 kb on + strandat 83.641 kb on + strandat 83.641 kb on + strandat 83.642 kb on - strandat 83.699 kb on - strandat 83.782 kb on + strand, within GFF73at 83.789 kb on + strand, within GFF73at 83.790 kb on - strand, within GFF73at 83.790 kb on - strand, within GFF73at 83.908 kb on + strand, within GFF73at 83.908 kb on + strand, within GFF73at 83.915 kb on + strand, within GFF73at 83.915 kb on + strand, within GFF73at 83.915 kb on + strand, within GFF73at 83.915 kb on + strand, within GFF73at 83.915 kb on + strand, within GFF73at 83.915 kb on + strand, within GFF73at 83.915 kb on + strand, within GFF73at 83.915 kb on + strand, within GFF73at 83.915 kb on + strand, within GFF73at 83.916 kb on - strand, within GFF73at 83.916 kb on - strand, within GFF73at 83.916 kb on - strand, within GFF73at 84.015 kb on + strand, within GFF73at 84.016 kb on - strand, within GFF73at 84.038 kb on + strand, within GFF73at 84.038 kb on + strand, within GFF73at 84.038 kb on + strand, within GFF73at 84.038 kb on + strand, within GFF73at 84.039 kb on - strand, within GFF73at 84.039 kb on - strand, within GFF73at 84.059 kb on + strand, within GFF73at 84.059 kb on + strand, within GFF73at 84.060 kb on - strand, within GFF73at 84.112 kb on + strandat 84.157 kb on + strandat 84.157 kb on + strandat 84.157 kb on + strandat 84.157 kb on + strandat 84.157 kb on + strandat 84.157 kb on + strandat 84.157 kb on + strandat 84.157 kb on + strandat 84.157 kb on + strandat 84.157 kb on + strandat 84.157 kb on + strandat 84.157 kb on + strandat 84.157 kb on + strandat 84.158 kb on - strandat 84.158 kb on - strandat 84.158 kb on - strandat 84.158 kb on - strandat 84.170 kb on + strandat 84.226 kb on - strandat 84.254 kb on + strandat 84.254 kb on + strandat 84.254 kb on + strandat 84.255 kb on - strandat 84.255 kb on - strandat 84.255 kb on - strandat 84.257 kb on + strandat 84.257 kb on + strandat 84.257 kb on + strandat 84.257 kb on + strandat 84.309 kb on + strand, within GFF74at 84.309 kb on + strand, within GFF74at 84.310 kb on - strand, within GFF74at 84.310 kb on - strand, within GFF74at 84.310 kb on - strand, within GFF74at 84.390 kb on + strand, within GFF74at 84.390 kb on + strand, within GFF74at 84.391 kb on - strand, within GFF74at 84.391 kb on - strand, within GFF74at 84.391 kb on - strand, within GFF74at 84.409 kb on + strand, within GFF74at 84.409 kb on + strand, within GFF74at 84.409 kb on + strand, within GFF74at 84.409 kb on + strand, within GFF74at 84.410 kb on - strand, within GFF74at 84.410 kb on - strand, within GFF74at 84.508 kb on + strand, within GFF74at 84.509 kb on - strand, within GFF74at 84.535 kb on + strand, within GFF74at 84.535 kb on + strand, within GFF74at 84.535 kb on + strand, within GFF74at 84.535 kb on + strand, within GFF74at 84.535 kb on + strand, within GFF74at 84.535 kb on + strand, within GFF74at 84.535 kb on + strand, within GFF74at 84.535 kb on + strand, within GFF74at 84.535 kb on + strand, within GFF74at 84.536 kb on - strand, within GFF74at 84.536 kb on - strand, within GFF74at 84.536 kb on - strand, within GFF74at 84.545 kb on + strand, within GFF74at 84.545 kb on + strand, within GFF74at 84.552 kb on - strand, within GFF74at 84.553 kb on + strand, within GFF74at 84.553 kb on + strand, within GFF74at 84.553 kb on + strand, within GFF74at 84.553 kb on + strand, within GFF74at 84.553 kb on + strand, within GFF74at 84.553 kb on + strand, within GFF74at 84.553 kb on + strand, within GFF74at 84.553 kb on + strand, within GFF74at 84.554 kb on - strand, within GFF74at 84.554 kb on - strand, within GFF74at 84.554 kb on - strand, within GFF74at 84.554 kb on - strand, within GFF74at 84.554 kb on - strand, within GFF74at 84.554 kb on - strand, within GFF74at 84.554 kb on - strand, within GFF74at 84.554 kb on - strand, within GFF74at 84.554 kb on - strand, within GFF74at 84.554 kb on - strand, within GFF74at 84.582 kb on + strandat 84.583 kb on - strandat 84.602 kb on - strandat 84.606 kb on + strandat 84.607 kb on - strandat 84.607 kb on - strandat 84.607 kb on - strandat 84.622 kb on + strandat 84.622 kb on + strandat 84.622 kb on + strandat 84.622 kb on + strandat 84.712 kb on + strandat 84.713 kb on - strandat 84.720 kb on + strandat 84.720 kb on + strandat 84.720 kb on + strandat 84.720 kb on + strandat 84.720 kb on + strandat 84.720 kb on + strandat 84.720 kb on + strandat 84.720 kb on + strandat 84.721 kb on - strandat 84.725 kb on + strandat 84.725 kb on + strandat 84.725 kb on + strandat 84.725 kb on + strandat 84.725 kb on + strandat 84.725 kb on + strandat 84.725 kb on + strandat 84.725 kb on + strandat 84.725 kb on + strandat 84.725 kb on + strandat 84.726 kb on - strandat 84.726 kb on - strandat 84.726 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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83,636 + +0.2
83,636 + +0.3
83,636 + -1.3
83,636 + -1.8
83,641 + -0.2
83,641 + -0.8
83,641 + +0.0
83,642 - -2.8
83,699 - -1.8
83,782 + GFF73 0.25 -1.3
83,789 + GFF73 0.27 -1.3
83,790 - GFF73 0.27 +0.0
83,790 - GFF73 0.27 -0.8
83,908 + GFF73 0.53 +0.3
83,908 + GFF73 0.53 +0.3
83,915 + GFF73 0.55 -0.4
83,915 + GFF73 0.55 -0.1
83,915 + GFF73 0.55 -0.7
83,915 + GFF73 0.55 -0.6
83,915 + GFF73 0.55 -0.1
83,915 + GFF73 0.55 -1.6
83,915 + GFF73 0.55 -1.0
83,915 + GFF73 0.55 +0.2
83,915 + GFF73 0.55 +0.0
83,916 - GFF73 0.55 -0.2
83,916 - GFF73 0.55 +0.8
83,916 - GFF73 0.55 -2.3
84,015 + GFF73 0.77 -1.0
84,016 - GFF73 0.77 -1.8
84,038 + GFF73 0.82 -1.8
84,038 + GFF73 0.82 -1.3
84,038 + GFF73 0.82 +1.0
84,038 + GFF73 0.82 -1.6
84,039 - GFF73 0.82 -1.3
84,039 - GFF73 0.82 -0.8
84,059 + GFF73 0.87 -0.3
84,059 + GFF73 0.87 -2.0
84,060 - GFF73 0.87 +0.3
84,112 + -0.4
84,157 + -0.2
84,157 + +0.4
84,157 + -0.8
84,157 + -0.2
84,157 + +0.0
84,157 + -0.2
84,157 + +0.6
84,157 + +0.0
84,157 + +0.6
84,157 + -0.5
84,157 + -2.1
84,157 + -1.0
84,157 + -1.2
84,158 - -0.6
84,158 - +0.4
84,158 - -1.0
84,158 - +0.3
84,170 + -0.5
84,226 - -0.5
84,254 + -1.0
84,254 + -1.2
84,254 + -0.2
84,255 - +1.0
84,255 - -1.0
84,255 - -0.2
84,257 + +0.4
84,257 + +0.0
84,257 + +0.4
84,257 + +0.5
84,309 + GFF74 0.22 +0.0
84,309 + GFF74 0.22 +0.0
84,310 - GFF74 0.22 -2.3
84,310 - GFF74 0.22 +1.0
84,310 - GFF74 0.22 -0.3
84,390 + GFF74 0.43 +0.6
84,390 + GFF74 0.43 -0.8
84,391 - GFF74 0.44 +0.6
84,391 - GFF74 0.44 -0.6
84,391 - GFF74 0.44 +0.8
84,409 + GFF74 0.48 -0.4
84,409 + GFF74 0.48 -1.5
84,409 + GFF74 0.48 -1.9
84,409 + GFF74 0.48 -0.6
84,410 - GFF74 0.49 +1.0
84,410 - GFF74 0.49 +0.0
84,508 + GFF74 0.75 +0.6
84,509 - GFF74 0.75 -1.3
84,535 + GFF74 0.82 +0.4
84,535 + GFF74 0.82 -1.0
84,535 + GFF74 0.82 +0.6
84,535 + GFF74 0.82 +0.2
84,535 + GFF74 0.82 +0.6
84,535 + GFF74 0.82 +0.6
84,535 + GFF74 0.82 -0.7
84,535 + GFF74 0.82 -0.4
84,535 + GFF74 0.82 +0.0
84,536 - GFF74 0.82 -0.9
84,536 - GFF74 0.82 -1.0
84,536 - GFF74 0.82 -0.1
84,545 + GFF74 0.84 +0.4
84,545 + GFF74 0.84 +0.0
84,552 - GFF74 0.86 -1.3
84,553 + GFF74 0.87 -0.6
84,553 + GFF74 0.87 -0.1
84,553 + GFF74 0.87 -1.0
84,553 + GFF74 0.87 -1.6
84,553 + GFF74 0.87 -0.1
84,553 + GFF74 0.87 -0.6
84,553 + GFF74 0.87 -0.2
84,553 + GFF74 0.87 +0.0
84,554 - GFF74 0.87 -0.8
84,554 - GFF74 0.87 +0.2
84,554 - GFF74 0.87 -1.3
84,554 - GFF74 0.87 +0.0
84,554 - GFF74 0.87 +0.3
84,554 - GFF74 0.87 +0.1
84,554 - GFF74 0.87 -2.6
84,554 - GFF74 0.87 +0.0
84,554 - GFF74 0.87 -0.6
84,554 - GFF74 0.87 -0.3
84,582 + -1.6
84,583 - +0.0
84,602 - -0.5
84,606 + +0.3
84,607 - -0.6
84,607 - +0.3
84,607 - -0.3
84,622 + -1.6
84,622 + -1.0
84,622 + -1.3
84,622 + +1.0
84,712 + +0.0
84,713 - -2.0
84,720 + -0.4
84,720 + -0.3
84,720 + +0.0
84,720 + -0.3
84,720 + -0.9
84,720 + +0.0
84,720 + -1.0
84,720 + -1.4
84,721 - -1.0
84,725 + +0.0
84,725 + -0.5
84,725 + -1.0
84,725 + -1.1
84,725 + -0.3
84,725 + -0.1
84,725 + -0.3
84,725 + -0.2
84,725 + -1.4
84,725 + -1.0
84,726 - -1.8
84,726 - +0.2
84,726 - -1.9

Or see this region's nucleotide sequence