Strain Fitness in Methylophilus sp. DMC18 around GFF712

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF710 and GFF711 are separated by 27 nucleotidesGFF711 and GFF712 are separated by 57 nucleotidesGFF712 and GFF713 are separated by 15 nucleotidesGFF713 and GFF714 overlap by 15 nucleotides GFF710 - hypothetical protein, at 790,079 to 790,609 GFF710 GFF711 - hypothetical protein, at 790,637 to 791,092 GFF711 GFF712 - LL-diaminopimelate aminotransferase, at 791,150 to 792,346 GFF712 GFF713 - hypothetical protein, at 792,362 to 793,282 GFF713 GFF714 - hypothetical protein, at 793,268 to 795,049 GFF714 Position (kb) 791 792 793Strain fitness (log2 ratio) -2 -1 0 1 2at 790.159 kb on - strand, within GFF710at 790.164 kb on + strand, within GFF710at 790.196 kb on + strand, within GFF710at 790.196 kb on + strand, within GFF710at 790.197 kb on - strand, within GFF710at 790.197 kb on - strand, within GFF710at 790.197 kb on - strand, within GFF710at 790.221 kb on + strand, within GFF710at 790.221 kb on + strand, within GFF710at 790.228 kb on + strand, within GFF710at 790.256 kb on - strand, within GFF710at 790.264 kb on + strand, within GFF710at 790.265 kb on - strand, within GFF710at 790.294 kb on + strand, within GFF710at 790.294 kb on + strand, within GFF710at 790.294 kb on + strand, within GFF710at 790.294 kb on + strand, within GFF710at 790.295 kb on - strand, within GFF710at 790.295 kb on - strand, within GFF710at 790.396 kb on + strand, within GFF710at 790.400 kb on - strand, within GFF710at 790.405 kb on + strand, within GFF710at 790.406 kb on - strand, within GFF710at 790.420 kb on + strand, within GFF710at 790.426 kb on + strand, within GFF710at 790.427 kb on - strand, within GFF710at 790.427 kb on - strand, within GFF710at 790.445 kb on + strand, within GFF710at 790.445 kb on + strand, within GFF710at 790.445 kb on + strand, within GFF710at 790.446 kb on - strand, within GFF710at 790.446 kb on - strand, within GFF710at 790.448 kb on - strand, within GFF710at 790.487 kb on + strand, within GFF710at 790.487 kb on + strand, within GFF710at 790.489 kb on + strand, within GFF710at 790.489 kb on + strand, within GFF710at 790.489 kb on + strand, within GFF710at 790.489 kb on + strand, within GFF710at 790.489 kb on + strand, within GFF710at 790.489 kb on + strand, within GFF710at 790.490 kb on - strand, within GFF710at 790.490 kb on - strand, within GFF710at 790.490 kb on - strand, within GFF710at 790.546 kb on + strand, within GFF710at 790.546 kb on + strand, within GFF710at 790.546 kb on + strand, within GFF710at 790.546 kb on + strand, within GFF710at 790.547 kb on - strand, within GFF710at 790.547 kb on - strand, within GFF710at 790.569 kb on + strandat 790.647 kb on + strandat 790.648 kb on - strandat 790.691 kb on - strand, within GFF711at 790.712 kb on + strand, within GFF711at 790.712 kb on + strand, within GFF711at 790.712 kb on + strand, within GFF711at 790.712 kb on + strand, within GFF711at 790.713 kb on - strand, within GFF711at 790.713 kb on - strand, within GFF711at 790.713 kb on - strand, within GFF711at 790.776 kb on + strand, within GFF711at 790.777 kb on - strand, within GFF711at 790.784 kb on + strand, within GFF711at 790.789 kb on + strand, within GFF711at 790.789 kb on + strand, within GFF711at 790.789 kb on + strand, within GFF711at 790.789 kb on + strand, within GFF711at 790.789 kb on + strand, within GFF711at 790.789 kb on + strand, within GFF711at 790.790 kb on - strand, within GFF711at 790.790 kb on - strand, within GFF711at 790.790 kb on - strand, within GFF711at 790.891 kb on + strand, within GFF711at 790.891 kb on + strand, within GFF711at 790.891 kb on + strand, within GFF711at 790.891 kb on + strand, within GFF711at 790.891 kb on + strand, within GFF711at 790.891 kb on + strand, within GFF711at 790.892 kb on - strand, within GFF711at 790.892 kb on - strand, within GFF711at 790.892 kb on - strand, within GFF711at 790.901 kb on - strand, within GFF711at 790.960 kb on + strand, within GFF711at 790.960 kb on + strand, within GFF711at 790.978 kb on + strand, within GFF711at 790.978 kb on + strand, within GFF711at 790.979 kb on - strand, within GFF711at 790.979 kb on - strand, within GFF711at 790.979 kb on - strand, within GFF711at 790.979 kb on - strand, within GFF711at 790.981 kb on + strand, within GFF711at 790.982 kb on - strand, within GFF711at 790.982 kb on - strand, within GFF711at 791.029 kb on + strand, within GFF711at 791.030 kb on - strand, within GFF711at 791.057 kb on - strandat 791.145 kb on + strandat 791.152 kb on - strandat 791.163 kb on + strandat 791.213 kb on + strandat 791.217 kb on - strandat 791.297 kb on - strand, within GFF712at 791.310 kb on + strand, within GFF712at 791.333 kb on - strand, within GFF712at 791.333 kb on - strand, within GFF712at 791.378 kb on + strand, within GFF712at 791.379 kb on - strand, within GFF712at 791.379 kb on - strand, within GFF712at 791.501 kb on + strand, within GFF712at 791.529 kb on + strand, within GFF712at 791.529 kb on + strand, within GFF712at 791.529 kb on + strand, within GFF712at 791.538 kb on + strand, within GFF712at 791.722 kb on - strand, within GFF712at 791.834 kb on + strand, within GFF712at 791.835 kb on - strand, within GFF712at 791.835 kb on - strand, within GFF712at 791.956 kb on - strand, within GFF712at 792.038 kb on + strand, within GFF712at 792.160 kb on + strand, within GFF712at 792.261 kb on + strandat 792.261 kb on + strandat 792.261 kb on + strandat 792.261 kb on + strandat 792.262 kb on - strandat 792.262 kb on - strandat 792.262 kb on - strandat 792.262 kb on - strandat 792.265 kb on + strandat 792.266 kb on - strandat 792.333 kb on - strandat 792.346 kb on + strandat 792.355 kb on - strandat 792.355 kb on - strandat 792.359 kb on + strandat 792.359 kb on + strandat 792.359 kb on + strandat 792.359 kb on + strandat 792.359 kb on + strandat 792.425 kb on + strandat 792.456 kb on - strand, within GFF713at 792.507 kb on + strand, within GFF713at 792.515 kb on + strand, within GFF713at 792.515 kb on + strand, within GFF713at 792.515 kb on + strand, within GFF713at 792.538 kb on + strand, within GFF713at 792.539 kb on - strand, within GFF713at 792.566 kb on + strand, within GFF713at 792.566 kb on + strand, within GFF713at 792.566 kb on + strand, within GFF713at 792.568 kb on + strand, within GFF713at 792.568 kb on + strand, within GFF713at 792.594 kb on - strand, within GFF713at 792.594 kb on - strand, within GFF713at 792.632 kb on + strand, within GFF713at 792.633 kb on - strand, within GFF713at 792.948 kb on + strand, within GFF713at 792.948 kb on + strand, within GFF713at 792.948 kb on + strand, within GFF713at 792.948 kb on + strand, within GFF713at 792.957 kb on + strand, within GFF713at 792.958 kb on - strand, within GFF713at 792.961 kb on + strand, within GFF713at 792.961 kb on + strand, within GFF713at 792.961 kb on + strand, within GFF713at 792.961 kb on + strand, within GFF713at 792.962 kb on - strand, within GFF713at 792.962 kb on - strand, within GFF713at 792.962 kb on - strand, within GFF713at 793.024 kb on + strand, within GFF713at 793.024 kb on + strand, within GFF713at 793.025 kb on - strand, within GFF713at 793.025 kb on - strand, within GFF713at 793.128 kb on + strand, within GFF713at 793.128 kb on + strand, within GFF713at 793.128 kb on + strand, within GFF713at 793.129 kb on - strand, within GFF713at 793.132 kb on + strand, within GFF713at 793.133 kb on - strand, within GFF713at 793.133 kb on - strand, within GFF713at 793.166 kb on + strand, within GFF713at 793.219 kb on + strandat 793.219 kb on + strandat 793.222 kb on + strandat 793.222 kb on + strandat 793.236 kb on + strandat 793.236 kb on + strandat 793.236 kb on + strandat 793.236 kb on + strandat 793.236 kb on + strandat 793.237 kb on - strandat 793.237 kb on - strandat 793.237 kb on - strandat 793.237 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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790,159 - GFF710 0.15 -0.0
790,164 + GFF710 0.16 -0.0
790,196 + GFF710 0.22 -0.1
790,196 + GFF710 0.22 -0.3
790,197 - GFF710 0.22 -0.6
790,197 - GFF710 0.22 +1.3
790,197 - GFF710 0.22 -0.3
790,221 + GFF710 0.27 +1.0
790,221 + GFF710 0.27 +0.2
790,228 + GFF710 0.28 -1.8
790,256 - GFF710 0.33 +1.0
790,264 + GFF710 0.35 -0.1
790,265 - GFF710 0.35 +1.0
790,294 + GFF710 0.40 -1.4
790,294 + GFF710 0.40 -1.2
790,294 + GFF710 0.40 +1.0
790,294 + GFF710 0.40 -1.1
790,295 - GFF710 0.41 +1.8
790,295 - GFF710 0.41 +0.7
790,396 + GFF710 0.60 -1.0
790,400 - GFF710 0.60 +0.4
790,405 + GFF710 0.61 +0.3
790,406 - GFF710 0.62 -0.2
790,420 + GFF710 0.64 -1.6
790,426 + GFF710 0.65 -0.3
790,427 - GFF710 0.66 -1.6
790,427 - GFF710 0.66 -0.4
790,445 + GFF710 0.69 -1.2
790,445 + GFF710 0.69 -0.8
790,445 + GFF710 0.69 +0.1
790,446 - GFF710 0.69 -0.4
790,446 - GFF710 0.69 +1.0
790,448 - GFF710 0.69 -0.3
790,487 + GFF710 0.77 +0.3
790,487 + GFF710 0.77 -0.3
790,489 + GFF710 0.77 -0.0
790,489 + GFF710 0.77 -1.3
790,489 + GFF710 0.77 +0.3
790,489 + GFF710 0.77 -0.0
790,489 + GFF710 0.77 -0.2
790,489 + GFF710 0.77 -0.0
790,490 - GFF710 0.77 +0.4
790,490 - GFF710 0.77 -0.4
790,490 - GFF710 0.77 +0.4
790,546 + GFF710 0.88 -1.0
790,546 + GFF710 0.88 +0.7
790,546 + GFF710 0.88 -1.0
790,546 + GFF710 0.88 +0.6
790,547 - GFF710 0.88 -0.3
790,547 - GFF710 0.88 -0.0
790,569 + -0.0
790,647 + -0.3
790,648 - +1.0
790,691 - GFF711 0.12 -0.0
790,712 + GFF711 0.16 -1.5
790,712 + GFF711 0.16 -0.7
790,712 + GFF711 0.16 -1.7
790,712 + GFF711 0.16 +0.6
790,713 - GFF711 0.17 -0.4
790,713 - GFF711 0.17 -0.6
790,713 - GFF711 0.17 -0.3
790,776 + GFF711 0.30 -2.0
790,777 - GFF711 0.31 -0.6
790,784 + GFF711 0.32 +0.6
790,789 + GFF711 0.33 -1.0
790,789 + GFF711 0.33 -0.3
790,789 + GFF711 0.33 -0.6
790,789 + GFF711 0.33 -1.0
790,789 + GFF711 0.33 -0.4
790,789 + GFF711 0.33 -1.2
790,790 - GFF711 0.34 +0.4
790,790 - GFF711 0.34 +0.6
790,790 - GFF711 0.34 +0.4
790,891 + GFF711 0.56 -1.0
790,891 + GFF711 0.56 -0.3
790,891 + GFF711 0.56 -1.3
790,891 + GFF711 0.56 -1.6
790,891 + GFF711 0.56 +0.6
790,891 + GFF711 0.56 +1.1
790,892 - GFF711 0.56 -2.5
790,892 - GFF711 0.56 -1.3
790,892 - GFF711 0.56 +0.5
790,901 - GFF711 0.58 -0.6
790,960 + GFF711 0.71 -0.4
790,960 + GFF711 0.71 -0.1
790,978 + GFF711 0.75 +0.4
790,978 + GFF711 0.75 -1.3
790,979 - GFF711 0.75 -2.5
790,979 - GFF711 0.75 -1.0
790,979 - GFF711 0.75 +0.5
790,979 - GFF711 0.75 +0.2
790,981 + GFF711 0.75 -0.4
790,982 - GFF711 0.76 -0.6
790,982 - GFF711 0.76 -1.5
791,029 + GFF711 0.86 -1.0
791,030 - GFF711 0.86 -0.3
791,057 - +0.4
791,145 + -1.0
791,152 - +1.0
791,163 + -1.0
791,213 + -1.3
791,217 - -1.3
791,297 - GFF712 0.12 -1.0
791,310 + GFF712 0.13 -1.0
791,333 - GFF712 0.15 -1.6
791,333 - GFF712 0.15 -2.7
791,378 + GFF712 0.19 -1.8
791,379 - GFF712 0.19 -2.0
791,379 - GFF712 0.19 -0.4
791,501 + GFF712 0.29 -1.8
791,529 + GFF712 0.32 +0.7
791,529 + GFF712 0.32 -2.3
791,529 + GFF712 0.32 -1.6
791,538 + GFF712 0.32 -0.8
791,722 - GFF712 0.48 -0.3
791,834 + GFF712 0.57 +0.6
791,835 - GFF712 0.57 -1.0
791,835 - GFF712 0.57 -1.6
791,956 - GFF712 0.67 -1.7
792,038 + GFF712 0.74 -1.0
792,160 + GFF712 0.84 -1.0
792,261 + -1.0
792,261 + -0.2
792,261 + +1.0
792,261 + -1.3
792,262 - -0.8
792,262 - +1.0
792,262 - -1.3
792,262 - +0.3
792,265 + -1.0
792,266 - +0.7
792,333 - -2.0
792,346 + -1.6
792,355 - -0.8
792,355 - -0.2
792,359 + -1.3
792,359 + -0.0
792,359 + -0.4
792,359 + +0.7
792,359 + -0.2
792,425 + -1.0
792,456 - GFF713 0.10 -1.0
792,507 + GFF713 0.16 -1.0
792,515 + GFF713 0.17 -1.3
792,515 + GFF713 0.17 -0.4
792,515 + GFF713 0.17 -0.0
792,538 + GFF713 0.19 -0.2
792,539 - GFF713 0.19 +0.8
792,566 + GFF713 0.22 +0.3
792,566 + GFF713 0.22 -1.0
792,566 + GFF713 0.22 -0.1
792,568 + GFF713 0.22 -0.2
792,568 + GFF713 0.22 -1.0
792,594 - GFF713 0.25 +0.8
792,594 - GFF713 0.25 +0.4
792,632 + GFF713 0.29 -1.0
792,633 - GFF713 0.29 +0.7
792,948 + GFF713 0.64 -0.4
792,948 + GFF713 0.64 -0.8
792,948 + GFF713 0.64 +0.1
792,948 + GFF713 0.64 -0.0
792,957 + GFF713 0.65 -1.3
792,958 - GFF713 0.65 +0.5
792,961 + GFF713 0.65 -0.8
792,961 + GFF713 0.65 -0.6
792,961 + GFF713 0.65 -0.1
792,961 + GFF713 0.65 -1.3
792,962 - GFF713 0.65 +0.4
792,962 - GFF713 0.65 -1.0
792,962 - GFF713 0.65 -1.0
793,024 + GFF713 0.72 -1.3
793,024 + GFF713 0.72 -1.3
793,025 - GFF713 0.72 -0.8
793,025 - GFF713 0.72 -0.3
793,128 + GFF713 0.83 -0.5
793,128 + GFF713 0.83 -0.2
793,128 + GFF713 0.83 +0.3
793,129 - GFF713 0.83 -0.0
793,132 + GFF713 0.84 -0.3
793,133 - GFF713 0.84 -1.5
793,133 - GFF713 0.84 -0.5
793,166 + GFF713 0.87 +0.4
793,219 + -1.2
793,219 + -0.0
793,222 + -1.5
793,222 + -1.2
793,236 + -0.8
793,236 + -1.6
793,236 + -1.6
793,236 + -1.6
793,236 + +0.8
793,237 - -1.4
793,237 - -0.1
793,237 - -0.9
793,237 - -1.6

Or see this region's nucleotide sequence