Strain Fitness in Methylophilus sp. DMC18 around GFF687

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF686 and GFF687 are separated by 68 nucleotidesGFF687 and GFF688 are separated by 14 nucleotides GFF686 - hypothetical protein, at 763,878 to 764,783 GFF686 GFF687 - hypothetical protein, at 764,852 to 765,874 GFF687 GFF688 - hypothetical protein, at 765,889 to 767,289 GFF688 Position (kb) 764 765 766Strain fitness (log2 ratio) -3 -2 -1 0 1at 763.853 kb on + strandat 763.853 kb on + strandat 763.853 kb on + strandat 763.854 kb on - strandat 763.855 kb on + strandat 763.856 kb on - strandat 763.894 kb on + strandat 763.909 kb on + strandat 763.909 kb on + strandat 763.931 kb on + strandat 763.931 kb on + strandat 763.963 kb on + strandat 763.963 kb on + strandat 763.963 kb on + strandat 763.963 kb on + strandat 763.964 kb on - strandat 763.966 kb on + strandat 763.967 kb on - strandat 763.970 kb on + strand, within GFF686at 763.975 kb on + strand, within GFF686at 763.975 kb on + strand, within GFF686at 763.975 kb on + strand, within GFF686at 764.006 kb on + strand, within GFF686at 764.006 kb on + strand, within GFF686at 764.006 kb on + strand, within GFF686at 764.006 kb on + strand, within GFF686at 764.007 kb on - strand, within GFF686at 764.010 kb on - strand, within GFF686at 764.026 kb on + strand, within GFF686at 764.026 kb on + strand, within GFF686at 764.043 kb on - strand, within GFF686at 764.071 kb on + strand, within GFF686at 764.075 kb on + strand, within GFF686at 764.075 kb on + strand, within GFF686at 764.076 kb on - strand, within GFF686at 764.098 kb on + strand, within GFF686at 764.111 kb on + strand, within GFF686at 764.120 kb on + strand, within GFF686at 764.120 kb on + strand, within GFF686at 764.120 kb on + strand, within GFF686at 764.132 kb on + strand, within GFF686at 764.152 kb on + strand, within GFF686at 764.152 kb on + strand, within GFF686at 764.152 kb on + strand, within GFF686at 764.190 kb on + strand, within GFF686at 764.190 kb on + strand, within GFF686at 764.191 kb on - strand, within GFF686at 764.191 kb on - strand, within GFF686at 764.210 kb on + strand, within GFF686at 764.210 kb on + strand, within GFF686at 764.210 kb on + strand, within GFF686at 764.210 kb on + strand, within GFF686at 764.210 kb on + strand, within GFF686at 764.210 kb on + strand, within GFF686at 764.210 kb on + strand, within GFF686at 764.210 kb on + strand, within GFF686at 764.211 kb on - strand, within GFF686at 764.211 kb on - strand, within GFF686at 764.211 kb on - strand, within GFF686at 764.215 kb on + strand, within GFF686at 764.215 kb on + strand, within GFF686at 764.215 kb on + strand, within GFF686at 764.269 kb on + strand, within GFF686at 764.270 kb on - strand, within GFF686at 764.270 kb on - strand, within GFF686at 764.273 kb on + strand, within GFF686at 764.273 kb on + strand, within GFF686at 764.291 kb on + strand, within GFF686at 764.291 kb on + strand, within GFF686at 764.291 kb on + strand, within GFF686at 764.291 kb on + strand, within GFF686at 764.306 kb on + strand, within GFF686at 764.307 kb on - strand, within GFF686at 764.327 kb on + strand, within GFF686at 764.342 kb on + strand, within GFF686at 764.343 kb on - strand, within GFF686at 764.485 kb on + strand, within GFF686at 764.494 kb on + strand, within GFF686at 764.494 kb on + strand, within GFF686at 764.494 kb on + strand, within GFF686at 764.501 kb on + strand, within GFF686at 764.502 kb on - strand, within GFF686at 764.609 kb on + strand, within GFF686at 764.638 kb on + strand, within GFF686at 764.638 kb on + strand, within GFF686at 764.639 kb on - strand, within GFF686at 764.770 kb on + strandat 764.781 kb on + strandat 764.781 kb on + strandat 764.781 kb on + strandat 764.781 kb on + strandat 764.781 kb on + strandat 764.809 kb on + strandat 764.830 kb on + strandat 764.833 kb on + strandat 764.833 kb on + strandat 764.833 kb on + strandat 764.837 kb on + strandat 764.847 kb on + strandat 764.847 kb on + strandat 764.847 kb on + strandat 764.851 kb on + strandat 765.004 kb on + strand, within GFF687at 765.048 kb on + strand, within GFF687at 765.144 kb on + strand, within GFF687at 765.309 kb on + strand, within GFF687at 765.374 kb on + strand, within GFF687at 765.451 kb on + strand, within GFF687at 765.520 kb on + strand, within GFF687at 765.626 kb on + strand, within GFF687at 765.627 kb on - strand, within GFF687at 765.650 kb on + strand, within GFF687at 765.680 kb on - strand, within GFF687at 765.683 kb on + strand, within GFF687at 765.790 kb on + strandat 765.831 kb on + strandat 765.851 kb on + strandat 765.872 kb on + strandat 765.872 kb on + strandat 765.872 kb on + strandat 765.882 kb on + strandat 765.882 kb on + strandat 765.882 kb on + strandat 765.885 kb on + strandat 765.885 kb on + strandat 765.885 kb on + strandat 765.885 kb on + strandat 765.888 kb on + strandat 766.117 kb on - strand, within GFF688at 766.160 kb on + strand, within GFF688at 766.160 kb on + strand, within GFF688at 766.284 kb on + strand, within GFF688at 766.568 kb on + strand, within GFF688at 766.812 kb on + strand, within GFF688at 766.812 kb on + strand, within GFF688at 766.859 kb on + strand, within GFF688

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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763,853 + -1.0
763,853 + -1.6
763,853 + -0.9
763,854 - -2.3
763,855 + -0.7
763,856 - -0.0
763,894 + -0.4
763,909 + +0.3
763,909 + -2.2
763,931 + -1.3
763,931 + -0.4
763,963 + -0.2
763,963 + +0.4
763,963 + -0.9
763,963 + -0.2
763,964 - -0.4
763,966 + -0.3
763,967 - -0.8
763,970 + GFF686 0.10 -0.6
763,975 + GFF686 0.11 +0.1
763,975 + GFF686 0.11 -1.6
763,975 + GFF686 0.11 -1.0
764,006 + GFF686 0.14 -0.6
764,006 + GFF686 0.14 -0.7
764,006 + GFF686 0.14 -0.6
764,006 + GFF686 0.14 -0.1
764,007 - GFF686 0.14 -0.2
764,010 - GFF686 0.15 -1.3
764,026 + GFF686 0.16 +0.3
764,026 + GFF686 0.16 -0.7
764,043 - GFF686 0.18 -3.1
764,071 + GFF686 0.21 +0.2
764,075 + GFF686 0.22 -0.4
764,075 + GFF686 0.22 -0.0
764,076 - GFF686 0.22 -1.3
764,098 + GFF686 0.24 +0.3
764,111 + GFF686 0.26 -1.8
764,120 + GFF686 0.27 +0.3
764,120 + GFF686 0.27 +1.7
764,120 + GFF686 0.27 -0.2
764,132 + GFF686 0.28 -0.0
764,152 + GFF686 0.30 -0.8
764,152 + GFF686 0.30 -0.4
764,152 + GFF686 0.30 -1.3
764,190 + GFF686 0.34 -1.7
764,190 + GFF686 0.34 -0.6
764,191 - GFF686 0.35 +0.3
764,191 - GFF686 0.35 +0.3
764,210 + GFF686 0.37 -0.6
764,210 + GFF686 0.37 -1.9
764,210 + GFF686 0.37 -0.7
764,210 + GFF686 0.37 -0.1
764,210 + GFF686 0.37 -0.0
764,210 + GFF686 0.37 +0.3
764,210 + GFF686 0.37 +0.7
764,210 + GFF686 0.37 -0.7
764,211 - GFF686 0.37 -0.9
764,211 - GFF686 0.37 -0.7
764,211 - GFF686 0.37 -0.1
764,215 + GFF686 0.37 -1.0
764,215 + GFF686 0.37 +0.7
764,215 + GFF686 0.37 +0.8
764,269 + GFF686 0.43 -0.1
764,270 - GFF686 0.43 -0.0
764,270 - GFF686 0.43 -0.4
764,273 + GFF686 0.44 -0.4
764,273 + GFF686 0.44 -0.6
764,291 + GFF686 0.46 -0.7
764,291 + GFF686 0.46 +0.7
764,291 + GFF686 0.46 +0.2
764,291 + GFF686 0.46 -0.5
764,306 + GFF686 0.47 +0.7
764,307 - GFF686 0.47 -1.6
764,327 + GFF686 0.50 -1.3
764,342 + GFF686 0.51 -0.8
764,343 - GFF686 0.51 -1.3
764,485 + GFF686 0.67 -0.4
764,494 + GFF686 0.68 -1.6
764,494 + GFF686 0.68 -0.6
764,494 + GFF686 0.68 -0.6
764,501 + GFF686 0.69 -2.0
764,502 - GFF686 0.69 -1.6
764,609 + GFF686 0.81 -1.0
764,638 + GFF686 0.84 -2.0
764,638 + GFF686 0.84 -0.0
764,639 - GFF686 0.84 -0.3
764,770 + +1.0
764,781 + -1.1
764,781 + +0.3
764,781 + -0.0
764,781 + -1.8
764,781 + -1.3
764,809 + -1.0
764,830 + -0.0
764,833 + -1.0
764,833 + -0.4
764,833 + -0.0
764,837 + +0.3
764,847 + -1.3
764,847 + -0.3
764,847 + +0.6
764,851 + -1.3
765,004 + GFF687 0.15 -0.3
765,048 + GFF687 0.19 -1.0
765,144 + GFF687 0.29 -1.3
765,309 + GFF687 0.45 -2.6
765,374 + GFF687 0.51 -0.0
765,451 + GFF687 0.59 -1.0
765,520 + GFF687 0.65 +0.4
765,626 + GFF687 0.76 -0.6
765,627 - GFF687 0.76 -1.3
765,650 + GFF687 0.78 -1.0
765,680 - GFF687 0.81 -1.0
765,683 + GFF687 0.81 -1.0
765,790 + -0.3
765,831 + +0.6
765,851 + -1.3
765,872 + -0.6
765,872 + -0.9
765,872 + -0.0
765,882 + -0.2
765,882 + -1.0
765,882 + -1.2
765,885 + -0.8
765,885 + -1.3
765,885 + +1.0
765,885 + -0.6
765,888 + -0.8
766,117 - GFF688 0.16 -1.6
766,160 + GFF688 0.19 -1.6
766,160 + GFF688 0.19 -1.3
766,284 + GFF688 0.28 -2.0
766,568 + GFF688 0.48 +0.3
766,812 + GFF688 0.66 -1.0
766,812 + GFF688 0.66 -0.0
766,859 + GFF688 0.69 -0.6

Or see this region's nucleotide sequence