Strain Fitness in Methylophilus sp. DMC18 around GFF678

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF677 and GFF678 are separated by 7 nucleotidesGFF678 and GFF679 overlap by 35 nucleotides GFF677 - NAD(P)-dependent methylenetetrahydromethanopterin dehydrogenase, at 754,419 to 755,312 GFF677 GFF678 - hypothetical protein, at 755,320 to 756,429 GFF678 GFF679 - Methenyltetrahydromethanopterin cyclohydrolase, at 756,395 to 757,390 GFF679 Position (kb) 755 756 757Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 754.366 kb on + strandat 754.367 kb on - strandat 754.367 kb on - strandat 754.367 kb on - strandat 754.373 kb on + strandat 754.374 kb on - strandat 754.374 kb on - strandat 754.374 kb on - strandat 754.374 kb on - strandat 754.375 kb on + strandat 754.375 kb on + strandat 754.375 kb on + strandat 754.375 kb on + strandat 754.375 kb on + strandat 754.376 kb on - strandat 754.376 kb on - strandat 754.391 kb on + strandat 754.392 kb on - strandat 754.395 kb on + strandat 754.395 kb on + strandat 754.395 kb on + strandat 754.396 kb on - strandat 754.396 kb on - strandat 754.436 kb on + strandat 754.436 kb on + strandat 754.436 kb on + strandat 754.448 kb on + strandat 754.484 kb on + strandat 754.503 kb on + strandat 754.521 kb on + strand, within GFF677at 754.521 kb on + strand, within GFF677at 754.522 kb on - strand, within GFF677at 754.524 kb on - strand, within GFF677at 754.524 kb on - strand, within GFF677at 754.664 kb on + strand, within GFF677at 754.664 kb on + strand, within GFF677at 754.664 kb on + strand, within GFF677at 754.664 kb on + strand, within GFF677at 754.664 kb on + strand, within GFF677at 754.694 kb on + strand, within GFF677at 754.694 kb on + strand, within GFF677at 754.695 kb on - strand, within GFF677at 754.721 kb on + strand, within GFF677at 754.721 kb on + strand, within GFF677at 754.722 kb on - strand, within GFF677at 754.758 kb on + strand, within GFF677at 754.825 kb on + strand, within GFF677at 754.826 kb on - strand, within GFF677at 754.832 kb on + strand, within GFF677at 754.833 kb on - strand, within GFF677at 754.873 kb on + strand, within GFF677at 754.911 kb on + strand, within GFF677at 754.911 kb on + strand, within GFF677at 754.911 kb on + strand, within GFF677at 754.911 kb on + strand, within GFF677at 754.911 kb on + strand, within GFF677at 754.911 kb on + strand, within GFF677at 754.911 kb on + strand, within GFF677at 754.911 kb on + strand, within GFF677at 754.911 kb on + strand, within GFF677at 754.912 kb on - strand, within GFF677at 754.935 kb on + strand, within GFF677at 754.964 kb on + strand, within GFF677at 755.208 kb on + strand, within GFF677at 755.208 kb on + strand, within GFF677at 755.208 kb on + strand, within GFF677at 755.209 kb on - strand, within GFF677at 755.209 kb on - strand, within GFF677at 755.209 kb on - strand, within GFF677at 755.209 kb on - strand, within GFF677at 755.271 kb on + strandat 755.272 kb on - strandat 755.283 kb on + strandat 755.283 kb on + strandat 755.283 kb on + strandat 755.283 kb on + strandat 755.284 kb on - strandat 755.284 kb on - strandat 755.284 kb on - strandat 755.284 kb on - strandat 755.284 kb on - strandat 755.289 kb on + strandat 755.289 kb on + strandat 755.289 kb on + strandat 755.289 kb on + strandat 755.289 kb on + strandat 755.290 kb on - strandat 755.290 kb on - strandat 755.306 kb on - strandat 755.310 kb on + strandat 755.356 kb on + strandat 755.356 kb on + strandat 755.358 kb on + strandat 755.385 kb on + strandat 755.448 kb on + strand, within GFF678at 755.562 kb on + strand, within GFF678at 755.562 kb on + strand, within GFF678at 755.602 kb on + strand, within GFF678at 755.607 kb on + strand, within GFF678at 755.648 kb on + strand, within GFF678at 755.649 kb on - strand, within GFF678at 755.677 kb on - strand, within GFF678at 755.728 kb on + strand, within GFF678at 755.728 kb on + strand, within GFF678at 755.798 kb on + strand, within GFF678at 755.798 kb on + strand, within GFF678at 755.925 kb on + strand, within GFF678at 755.926 kb on - strand, within GFF678at 755.929 kb on + strand, within GFF678at 755.929 kb on + strand, within GFF678at 755.929 kb on + strand, within GFF678at 756.008 kb on + strand, within GFF678at 756.027 kb on + strand, within GFF678at 756.027 kb on + strand, within GFF678at 756.059 kb on + strand, within GFF678at 756.059 kb on + strand, within GFF678at 756.059 kb on + strand, within GFF678at 756.059 kb on + strand, within GFF678at 756.059 kb on + strand, within GFF678at 756.059 kb on + strand, within GFF678at 756.059 kb on + strand, within GFF678at 756.060 kb on - strand, within GFF678at 756.060 kb on - strand, within GFF678at 756.060 kb on - strand, within GFF678at 756.106 kb on + strand, within GFF678at 756.106 kb on + strand, within GFF678at 756.125 kb on + strand, within GFF678at 756.125 kb on + strand, within GFF678at 756.125 kb on + strand, within GFF678at 756.125 kb on + strand, within GFF678at 756.125 kb on + strand, within GFF678at 756.125 kb on + strand, within GFF678at 756.126 kb on - strand, within GFF678at 756.126 kb on - strand, within GFF678at 756.126 kb on - strand, within GFF678at 756.126 kb on - strand, within GFF678at 756.187 kb on + strand, within GFF678at 756.208 kb on + strand, within GFF678at 756.257 kb on + strand, within GFF678at 756.313 kb on + strand, within GFF678at 756.313 kb on + strand, within GFF678at 756.313 kb on + strand, within GFF678at 756.384 kb on - strandat 756.394 kb on + strandat 756.394 kb on + strandat 756.394 kb on + strandat 756.394 kb on + strandat 756.394 kb on + strandat 756.394 kb on + strandat 756.394 kb on + strandat 756.394 kb on + strandat 756.394 kb on + strandat 756.395 kb on - strandat 756.395 kb on - strandat 756.395 kb on - strandat 756.395 kb on - strandat 756.395 kb on - strandat 756.395 kb on - strandat 756.395 kb on - strandat 756.421 kb on - strandat 756.427 kb on + strandat 756.427 kb on + strandat 756.462 kb on - strandat 756.669 kb on + strand, within GFF679at 756.669 kb on + strand, within GFF679at 756.669 kb on + strand, within GFF679at 756.669 kb on + strand, within GFF679at 756.670 kb on - strand, within GFF679at 756.670 kb on - strand, within GFF679at 756.722 kb on + strand, within GFF679at 756.723 kb on - strand, within GFF679at 756.808 kb on + strand, within GFF679at 756.809 kb on - strand, within GFF679at 756.925 kb on + strand, within GFF679at 756.937 kb on + strand, within GFF679at 756.938 kb on - strand, within GFF679at 756.972 kb on + strand, within GFF679at 756.972 kb on + strand, within GFF679at 756.972 kb on + strand, within GFF679at 757.009 kb on + strand, within GFF679at 757.009 kb on + strand, within GFF679at 757.009 kb on + strand, within GFF679at 757.009 kb on + strand, within GFF679at 757.009 kb on + strand, within GFF679at 757.009 kb on + strand, within GFF679at 757.009 kb on + strand, within GFF679at 757.035 kb on + strand, within GFF679at 757.035 kb on + strand, within GFF679at 757.035 kb on + strand, within GFF679at 757.093 kb on + strand, within GFF679at 757.160 kb on - strand, within GFF679at 757.197 kb on + strand, within GFF679at 757.197 kb on + strand, within GFF679at 757.198 kb on - strand, within GFF679at 757.220 kb on + strand, within GFF679at 757.220 kb on + strand, within GFF679at 757.221 kb on - strand, within GFF679at 757.246 kb on + strand, within GFF679at 757.247 kb on - strand, within GFF679at 757.268 kb on + strand, within GFF679at 757.404 kb on + strandat 757.407 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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754,366 + +1.1
754,367 - -0.8
754,367 - +0.2
754,367 - +1.6
754,373 + +0.6
754,374 - -1.0
754,374 - -1.0
754,374 - -1.1
754,374 - -0.6
754,375 + -3.0
754,375 + -0.3
754,375 + -1.3
754,375 + +0.6
754,375 + +0.2
754,376 - -0.2
754,376 - +0.6
754,391 + +0.4
754,392 - -0.8
754,395 + -0.0
754,395 + -0.0
754,395 + -1.0
754,396 - -0.8
754,396 - -1.0
754,436 + -0.4
754,436 + -1.0
754,436 + -0.2
754,448 + -2.0
754,484 + -1.3
754,503 + -1.1
754,521 + GFF677 0.11 -1.6
754,521 + GFF677 0.11 -0.0
754,522 - GFF677 0.12 +0.3
754,524 - GFF677 0.12 -0.6
754,524 - GFF677 0.12 -2.5
754,664 + GFF677 0.27 -0.5
754,664 + GFF677 0.27 -3.4
754,664 + GFF677 0.27 -1.5
754,664 + GFF677 0.27 -0.3
754,664 + GFF677 0.27 -0.3
754,694 + GFF677 0.31 -1.1
754,694 + GFF677 0.31 +1.0
754,695 - GFF677 0.31 -0.8
754,721 + GFF677 0.34 +0.3
754,721 + GFF677 0.34 -0.7
754,722 - GFF677 0.34 -1.1
754,758 + GFF677 0.38 +0.3
754,825 + GFF677 0.45 -4.0
754,826 - GFF677 0.46 -0.3
754,832 + GFF677 0.46 -0.8
754,833 - GFF677 0.46 +0.2
754,873 + GFF677 0.51 -1.7
754,911 + GFF677 0.55 -0.0
754,911 + GFF677 0.55 -1.2
754,911 + GFF677 0.55 -0.8
754,911 + GFF677 0.55 +0.3
754,911 + GFF677 0.55 -0.2
754,911 + GFF677 0.55 -0.4
754,911 + GFF677 0.55 +0.8
754,911 + GFF677 0.55 -0.3
754,911 + GFF677 0.55 -0.7
754,912 - GFF677 0.55 -0.2
754,935 + GFF677 0.58 -0.3
754,964 + GFF677 0.61 -0.4
755,208 + GFF677 0.88 -0.2
755,208 + GFF677 0.88 +0.8
755,208 + GFF677 0.88 -0.1
755,209 - GFF677 0.88 -1.0
755,209 - GFF677 0.88 +0.2
755,209 - GFF677 0.88 -1.8
755,209 - GFF677 0.88 -0.6
755,271 + -1.0
755,272 - +1.2
755,283 + -0.2
755,283 + -0.0
755,283 + -0.1
755,283 + -1.0
755,284 - -0.8
755,284 - -1.0
755,284 - +0.6
755,284 - -0.2
755,284 - -1.7
755,289 + -0.0
755,289 + -0.4
755,289 + -1.0
755,289 + -0.3
755,289 + -2.2
755,290 - -0.0
755,290 - -0.4
755,306 - -0.0
755,310 + -1.6
755,356 + -1.3
755,356 + -1.0
755,358 + +0.2
755,385 + -1.2
755,448 + GFF678 0.12 -1.0
755,562 + GFF678 0.22 -0.6
755,562 + GFF678 0.22 -2.0
755,602 + GFF678 0.25 -1.8
755,607 + GFF678 0.26 -1.0
755,648 + GFF678 0.30 +1.0
755,649 - GFF678 0.30 -1.5
755,677 - GFF678 0.32 -1.2
755,728 + GFF678 0.37 -0.8
755,728 + GFF678 0.37 -0.6
755,798 + GFF678 0.43 -1.0
755,798 + GFF678 0.43 -0.3
755,925 + GFF678 0.55 -0.3
755,926 - GFF678 0.55 +0.3
755,929 + GFF678 0.55 -0.5
755,929 + GFF678 0.55 -0.0
755,929 + GFF678 0.55 -1.0
756,008 + GFF678 0.62 -1.0
756,027 + GFF678 0.64 +0.1
756,027 + GFF678 0.64 -1.2
756,059 + GFF678 0.67 -1.3
756,059 + GFF678 0.67 -0.3
756,059 + GFF678 0.67 +0.3
756,059 + GFF678 0.67 -0.0
756,059 + GFF678 0.67 -0.5
756,059 + GFF678 0.67 -0.0
756,059 + GFF678 0.67 -1.6
756,060 - GFF678 0.67 -0.0
756,060 - GFF678 0.67 -0.6
756,060 - GFF678 0.67 -0.0
756,106 + GFF678 0.71 -0.6
756,106 + GFF678 0.71 -1.0
756,125 + GFF678 0.73 -1.1
756,125 + GFF678 0.73 -0.3
756,125 + GFF678 0.73 -0.3
756,125 + GFF678 0.73 -0.8
756,125 + GFF678 0.73 -1.0
756,125 + GFF678 0.73 -1.3
756,126 - GFF678 0.73 -0.8
756,126 - GFF678 0.73 -1.0
756,126 - GFF678 0.73 -2.5
756,126 - GFF678 0.73 -0.6
756,187 + GFF678 0.78 +0.4
756,208 + GFF678 0.80 +1.3
756,257 + GFF678 0.84 -2.0
756,313 + GFF678 0.89 -1.3
756,313 + GFF678 0.89 -0.0
756,313 + GFF678 0.89 -1.0
756,384 - -1.0
756,394 + -0.4
756,394 + +0.2
756,394 + -0.0
756,394 + -1.5
756,394 + -1.3
756,394 + -0.3
756,394 + -0.2
756,394 + -1.3
756,394 + +0.7
756,395 - +0.7
756,395 - -0.3
756,395 - -1.8
756,395 - +0.7
756,395 - -1.6
756,395 - -0.6
756,395 - -0.5
756,421 - -1.3
756,427 + -0.1
756,427 + -0.6
756,462 - -0.3
756,669 + GFF679 0.28 +1.0
756,669 + GFF679 0.28 -0.0
756,669 + GFF679 0.28 -1.0
756,669 + GFF679 0.28 -0.3
756,670 - GFF679 0.28 -1.0
756,670 - GFF679 0.28 -0.4
756,722 + GFF679 0.33 -0.1
756,723 - GFF679 0.33 +0.3
756,808 + GFF679 0.41 -0.2
756,809 - GFF679 0.42 -1.3
756,925 + GFF679 0.53 -0.8
756,937 + GFF679 0.54 +0.6
756,938 - GFF679 0.55 -0.9
756,972 + GFF679 0.58 -0.5
756,972 + GFF679 0.58 -1.6
756,972 + GFF679 0.58 +0.3
757,009 + GFF679 0.62 -1.1
757,009 + GFF679 0.62 -0.9
757,009 + GFF679 0.62 +0.1
757,009 + GFF679 0.62 -0.1
757,009 + GFF679 0.62 -0.5
757,009 + GFF679 0.62 +0.3
757,009 + GFF679 0.62 -0.8
757,035 + GFF679 0.64 -1.3
757,035 + GFF679 0.64 -0.3
757,035 + GFF679 0.64 -1.8
757,093 + GFF679 0.70 -0.5
757,160 - GFF679 0.77 -1.3
757,197 + GFF679 0.81 -0.3
757,197 + GFF679 0.81 -0.2
757,198 - GFF679 0.81 -2.5
757,220 + GFF679 0.83 -0.0
757,220 + GFF679 0.83 -1.2
757,221 - GFF679 0.83 -2.2
757,246 + GFF679 0.85 -0.2
757,247 - GFF679 0.86 -2.3
757,268 + GFF679 0.88 -1.3
757,404 + -0.2
757,407 + +1.0

Or see this region's nucleotide sequence