Strain Fitness in Methylophilus sp. DMC18 around GFF654

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF653 and GFF654 are separated by 77 nucleotidesGFF654 and GFF655 are separated by 16 nucleotidesGFF655 and GFF656 are separated by 22 nucleotides GFF653 - hypothetical protein, at 723,831 to 726,803 GFF653 GFF654 - tRNA pseudouridine synthase A, at 726,881 to 727,669 GFF654 GFF655 - N-(5'-phosphoribosyl)anthranilate isomerase, at 727,686 to 728,333 GFF655 GFF656 - Tryptophan synthase beta chain, at 728,356 to 729,558 GFF656 Position (kb) 726 727 728Strain fitness (log2 ratio) -2 -1 0 1at 725.892 kb on + strand, within GFF653at 725.892 kb on + strand, within GFF653at 725.892 kb on + strand, within GFF653at 725.920 kb on + strand, within GFF653at 725.920 kb on + strand, within GFF653at 725.984 kb on + strand, within GFF653at 725.985 kb on - strand, within GFF653at 726.032 kb on + strand, within GFF653at 726.032 kb on + strand, within GFF653at 726.032 kb on + strand, within GFF653at 726.033 kb on - strand, within GFF653at 726.033 kb on - strand, within GFF653at 726.380 kb on + strand, within GFF653at 726.425 kb on - strand, within GFF653at 726.690 kb on + strandat 726.690 kb on + strandat 726.690 kb on + strandat 726.690 kb on + strandat 726.690 kb on + strandat 726.690 kb on + strandat 726.690 kb on + strandat 726.690 kb on + strandat 726.691 kb on - strandat 726.691 kb on - strandat 726.691 kb on - strandat 726.692 kb on + strandat 726.692 kb on + strandat 726.693 kb on - strandat 726.693 kb on - strandat 726.693 kb on - strandat 726.693 kb on - strandat 726.693 kb on - strandat 726.802 kb on - strandat 726.869 kb on - strandat 726.870 kb on + strandat 726.870 kb on + strandat 726.870 kb on + strandat 726.870 kb on + strandat 726.873 kb on + strandat 726.873 kb on + strandat 726.873 kb on + strandat 726.874 kb on - strandat 726.900 kb on + strandat 726.901 kb on - strandat 726.901 kb on - strandat 726.905 kb on + strandat 726.905 kb on + strandat 726.906 kb on - strandat 726.906 kb on - strandat 726.969 kb on + strand, within GFF654at 726.969 kb on + strand, within GFF654at 726.969 kb on + strand, within GFF654at 726.970 kb on - strand, within GFF654at 727.033 kb on + strand, within GFF654at 727.114 kb on + strand, within GFF654at 727.114 kb on + strand, within GFF654at 727.114 kb on + strand, within GFF654at 727.143 kb on + strand, within GFF654at 727.143 kb on + strand, within GFF654at 727.144 kb on - strand, within GFF654at 727.144 kb on - strand, within GFF654at 727.211 kb on + strand, within GFF654at 727.212 kb on - strand, within GFF654at 727.212 kb on - strand, within GFF654at 727.212 kb on - strand, within GFF654at 727.212 kb on - strand, within GFF654at 727.218 kb on + strand, within GFF654at 727.218 kb on + strand, within GFF654at 727.218 kb on + strand, within GFF654at 727.218 kb on + strand, within GFF654at 727.218 kb on + strand, within GFF654at 727.219 kb on - strand, within GFF654at 727.220 kb on + strand, within GFF654at 727.220 kb on + strand, within GFF654at 727.220 kb on + strand, within GFF654at 727.220 kb on + strand, within GFF654at 727.222 kb on + strand, within GFF654at 727.222 kb on + strand, within GFF654at 727.222 kb on + strand, within GFF654at 727.222 kb on + strand, within GFF654at 727.260 kb on + strand, within GFF654at 727.261 kb on - strand, within GFF654at 727.306 kb on + strand, within GFF654at 727.468 kb on + strand, within GFF654at 727.471 kb on + strand, within GFF654at 727.490 kb on + strand, within GFF654at 727.491 kb on - strand, within GFF654at 727.491 kb on - strand, within GFF654at 727.491 kb on - strand, within GFF654at 727.589 kb on + strand, within GFF654at 727.607 kb on + strandat 727.608 kb on - strandat 728.311 kb on + strandat 728.311 kb on + strandat 728.311 kb on + strandat 728.315 kb on + strandat 728.315 kb on + strandat 728.315 kb on + strandat 728.339 kb on + strandat 728.339 kb on + strandat 728.339 kb on + strandat 728.343 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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725,892 + GFF653 0.69 -1.7
725,892 + GFF653 0.69 -0.1
725,892 + GFF653 0.69 +0.7
725,920 + GFF653 0.70 +1.3
725,920 + GFF653 0.70 -0.6
725,984 + GFF653 0.72 +0.3
725,985 - GFF653 0.72 +0.3
726,032 + GFF653 0.74 +1.7
726,032 + GFF653 0.74 -2.0
726,032 + GFF653 0.74 +0.6
726,033 - GFF653 0.74 -1.0
726,033 - GFF653 0.74 -1.3
726,380 + GFF653 0.86 -0.0
726,425 - GFF653 0.87 -1.3
726,690 + -0.4
726,690 + -0.0
726,690 + -0.7
726,690 + -0.6
726,690 + -1.0
726,690 + -0.5
726,690 + -0.0
726,690 + -1.0
726,691 - +1.0
726,691 - -0.6
726,691 - -0.6
726,692 + +1.5
726,692 + +0.6
726,693 - -1.3
726,693 - -0.2
726,693 - +0.1
726,693 - -0.1
726,693 - -1.3
726,802 - -0.4
726,869 - +0.1
726,870 + -0.0
726,870 + -0.6
726,870 + -1.3
726,870 + -0.3
726,873 + -2.0
726,873 + -0.5
726,873 + -0.0
726,874 - -2.0
726,900 + -0.3
726,901 - +1.3
726,901 - +0.1
726,905 + -0.0
726,905 + -0.0
726,906 - -1.6
726,906 - -1.3
726,969 + GFF654 0.11 -0.8
726,969 + GFF654 0.11 -0.6
726,969 + GFF654 0.11 -1.3
726,970 - GFF654 0.11 -1.3
727,033 + GFF654 0.19 -1.0
727,114 + GFF654 0.30 -0.0
727,114 + GFF654 0.30 -0.0
727,114 + GFF654 0.30 -0.0
727,143 + GFF654 0.33 +0.2
727,143 + GFF654 0.33 -1.0
727,144 - GFF654 0.33 -1.0
727,144 - GFF654 0.33 -0.3
727,211 + GFF654 0.42 -0.6
727,212 - GFF654 0.42 -1.8
727,212 - GFF654 0.42 -0.8
727,212 - GFF654 0.42 -0.2
727,212 - GFF654 0.42 -1.3
727,218 + GFF654 0.43 -0.8
727,218 + GFF654 0.43 -1.3
727,218 + GFF654 0.43 -0.5
727,218 + GFF654 0.43 +1.0
727,218 + GFF654 0.43 -1.0
727,219 - GFF654 0.43 -1.0
727,220 + GFF654 0.43 +0.7
727,220 + GFF654 0.43 +1.6
727,220 + GFF654 0.43 -0.6
727,220 + GFF654 0.43 -1.7
727,222 + GFF654 0.43 -0.0
727,222 + GFF654 0.43 -2.7
727,222 + GFF654 0.43 -0.0
727,222 + GFF654 0.43 -1.6
727,260 + GFF654 0.48 +1.0
727,261 - GFF654 0.48 -2.3
727,306 + GFF654 0.54 -1.3
727,468 + GFF654 0.74 -0.4
727,471 + GFF654 0.75 -0.0
727,490 + GFF654 0.77 -0.0
727,491 - GFF654 0.77 +0.4
727,491 - GFF654 0.77 -1.8
727,491 - GFF654 0.77 -1.8
727,589 + GFF654 0.90 -1.3
727,607 + -0.8
727,608 - -1.0
728,311 + -0.9
728,311 + -1.0
728,311 + -1.0
728,315 + -0.6
728,315 + -0.9
728,315 + -0.2
728,339 + -1.0
728,339 + -1.7
728,339 + -0.3
728,343 + -2.0

Or see this region's nucleotide sequence