Strain Fitness in Methylophilus sp. DMC18 around GFF620

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF619 and GFF620 are separated by 93 nucleotidesGFF620 and GFF621 overlap by 8 nucleotidesGFF621 and GFF622 overlap by 8 nucleotides GFF619 - hypothetical protein, at 684,904 to 687,027 GFF619 GFF620 - Exoribonuclease 2, at 687,121 to 689,022 GFF620 GFF621 - Polyamine aminopropyltransferase, at 689,015 to 689,806 GFF621 GFF622 - Ribosomal RNA large subunit methyltransferase L, at 689,799 to 690,950 GFF622 Position (kb) 687 688 689 690Strain fitness (log2 ratio) -3 -2 -1 0 1at 686.140 kb on - strand, within GFF619at 686.162 kb on + strand, within GFF619at 686.162 kb on + strand, within GFF619at 686.169 kb on - strand, within GFF619at 686.351 kb on + strand, within GFF619at 686.351 kb on + strand, within GFF619at 686.351 kb on + strand, within GFF619at 686.351 kb on + strand, within GFF619at 686.352 kb on - strand, within GFF619at 686.352 kb on - strand, within GFF619at 686.352 kb on - strand, within GFF619at 686.398 kb on + strand, within GFF619at 686.398 kb on + strand, within GFF619at 686.398 kb on + strand, within GFF619at 686.484 kb on + strand, within GFF619at 686.533 kb on + strand, within GFF619at 686.533 kb on + strand, within GFF619at 686.534 kb on - strand, within GFF619at 686.534 kb on - strand, within GFF619at 686.534 kb on - strand, within GFF619at 686.632 kb on + strand, within GFF619at 686.632 kb on + strand, within GFF619at 686.632 kb on + strand, within GFF619at 686.633 kb on - strand, within GFF619at 686.633 kb on - strand, within GFF619at 686.633 kb on - strand, within GFF619at 686.633 kb on - strand, within GFF619at 686.639 kb on + strand, within GFF619at 686.685 kb on - strand, within GFF619at 686.802 kb on + strand, within GFF619at 686.803 kb on - strand, within GFF619at 686.807 kb on + strand, within GFF619at 686.807 kb on + strand, within GFF619at 686.807 kb on + strand, within GFF619at 686.807 kb on + strand, within GFF619at 686.808 kb on - strand, within GFF619at 686.808 kb on - strand, within GFF619at 686.808 kb on - strand, within GFF619at 686.808 kb on - strand, within GFF619at 686.808 kb on - strand, within GFF619at 686.985 kb on + strandat 686.985 kb on + strandat 686.985 kb on + strandat 686.985 kb on + strandat 686.985 kb on + strandat 686.985 kb on + strandat 686.986 kb on - strandat 686.986 kb on - strandat 686.986 kb on - strandat 686.986 kb on - strandat 686.986 kb on - strandat 686.986 kb on - strandat 686.986 kb on - strandat 687.087 kb on + strandat 687.087 kb on + strandat 687.088 kb on - strandat 687.088 kb on - strandat 687.094 kb on - strandat 687.101 kb on + strandat 687.101 kb on + strandat 687.154 kb on - strandat 687.376 kb on + strand, within GFF620at 687.376 kb on + strand, within GFF620at 687.379 kb on + strand, within GFF620at 687.380 kb on - strand, within GFF620at 687.446 kb on - strand, within GFF620at 687.739 kb on + strand, within GFF620at 687.852 kb on + strand, within GFF620at 687.852 kb on + strand, within GFF620at 688.006 kb on - strand, within GFF620at 688.012 kb on + strand, within GFF620at 688.012 kb on + strand, within GFF620at 688.349 kb on - strand, within GFF620at 688.404 kb on + strand, within GFF620at 688.510 kb on + strand, within GFF620at 688.558 kb on + strand, within GFF620at 688.569 kb on + strand, within GFF620at 688.711 kb on + strand, within GFF620at 688.712 kb on - strand, within GFF620at 688.756 kb on + strand, within GFF620at 688.834 kb on + strandat 688.835 kb on - strandat 688.836 kb on + strandat 688.836 kb on + strandat 688.847 kb on + strandat 689.013 kb on + strandat 689.032 kb on + strandat 689.033 kb on - strandat 689.121 kb on + strand, within GFF621at 689.121 kb on + strand, within GFF621at 689.121 kb on + strand, within GFF621at 689.122 kb on - strand, within GFF621at 689.131 kb on + strand, within GFF621at 689.132 kb on - strand, within GFF621at 689.258 kb on + strand, within GFF621at 689.258 kb on + strand, within GFF621at 689.258 kb on + strand, within GFF621at 689.258 kb on + strand, within GFF621at 689.258 kb on + strand, within GFF621at 689.258 kb on + strand, within GFF621at 689.258 kb on + strand, within GFF621at 689.258 kb on + strand, within GFF621at 689.258 kb on + strand, within GFF621at 689.258 kb on + strand, within GFF621at 689.258 kb on + strand, within GFF621at 689.259 kb on - strand, within GFF621at 689.259 kb on - strand, within GFF621at 689.259 kb on - strand, within GFF621at 689.259 kb on - strand, within GFF621at 689.259 kb on - strand, within GFF621at 689.259 kb on - strand, within GFF621at 689.262 kb on + strand, within GFF621at 689.262 kb on + strand, within GFF621at 689.262 kb on + strand, within GFF621at 689.263 kb on - strand, within GFF621at 689.263 kb on - strand, within GFF621at 689.271 kb on - strand, within GFF621at 689.285 kb on - strand, within GFF621at 689.367 kb on + strand, within GFF621at 689.530 kb on + strand, within GFF621at 689.531 kb on - strand, within GFF621at 689.566 kb on + strand, within GFF621at 689.567 kb on - strand, within GFF621at 689.570 kb on + strand, within GFF621at 689.570 kb on + strand, within GFF621at 689.570 kb on + strand, within GFF621at 689.570 kb on + strand, within GFF621at 689.570 kb on + strand, within GFF621at 689.570 kb on + strand, within GFF621at 689.571 kb on - strand, within GFF621at 689.571 kb on - strand, within GFF621at 689.571 kb on - strand, within GFF621at 689.713 kb on + strand, within GFF621at 689.714 kb on - strand, within GFF621at 689.728 kb on + strandat 689.748 kb on + strandat 689.748 kb on + strandat 689.748 kb on + strandat 689.749 kb on - strandat 689.894 kb on + strandat 689.943 kb on + strand, within GFF622

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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686,140 - GFF619 0.58 -0.0
686,162 + GFF619 0.59 -0.6
686,162 + GFF619 0.59 -0.3
686,169 - GFF619 0.60 -0.3
686,351 + GFF619 0.68 -0.3
686,351 + GFF619 0.68 -0.4
686,351 + GFF619 0.68 -0.3
686,351 + GFF619 0.68 -3.0
686,352 - GFF619 0.68 +0.4
686,352 - GFF619 0.68 -1.0
686,352 - GFF619 0.68 -0.4
686,398 + GFF619 0.70 +1.0
686,398 + GFF619 0.70 -0.2
686,398 + GFF619 0.70 -1.3
686,484 + GFF619 0.74 -0.3
686,533 + GFF619 0.77 -0.3
686,533 + GFF619 0.77 +0.3
686,534 - GFF619 0.77 -1.0
686,534 - GFF619 0.77 +0.4
686,534 - GFF619 0.77 -0.8
686,632 + GFF619 0.81 +0.6
686,632 + GFF619 0.81 -1.3
686,632 + GFF619 0.81 +0.6
686,633 - GFF619 0.81 +0.6
686,633 - GFF619 0.81 -0.6
686,633 - GFF619 0.81 -0.1
686,633 - GFF619 0.81 +0.1
686,639 + GFF619 0.82 +1.0
686,685 - GFF619 0.84 -0.0
686,802 + GFF619 0.89 +0.4
686,803 - GFF619 0.89 -0.4
686,807 + GFF619 0.90 +0.4
686,807 + GFF619 0.90 -0.3
686,807 + GFF619 0.90 +1.3
686,807 + GFF619 0.90 +1.2
686,808 - GFF619 0.90 -0.2
686,808 - GFF619 0.90 +1.0
686,808 - GFF619 0.90 -1.0
686,808 - GFF619 0.90 -2.3
686,808 - GFF619 0.90 +0.6
686,985 + +0.6
686,985 + -0.6
686,985 + -0.6
686,985 + -0.6
686,985 + -0.0
686,985 + -0.3
686,986 - -0.6
686,986 - -0.3
686,986 - -0.0
686,986 - +0.6
686,986 - +1.0
686,986 - -1.5
686,986 - -1.3
687,087 + +0.6
687,087 + -0.0
687,088 - -1.3
687,088 - -0.9
687,094 - -0.3
687,101 + -0.2
687,101 + -0.5
687,154 - -1.0
687,376 + GFF620 0.13 -1.0
687,376 + GFF620 0.13 +0.2
687,379 + GFF620 0.14 -1.2
687,380 - GFF620 0.14 -2.2
687,446 - GFF620 0.17 -1.6
687,739 + GFF620 0.32 -0.8
687,852 + GFF620 0.38 -0.0
687,852 + GFF620 0.38 -1.0
688,006 - GFF620 0.47 -1.6
688,012 + GFF620 0.47 -1.8
688,012 + GFF620 0.47 -1.0
688,349 - GFF620 0.65 -1.0
688,404 + GFF620 0.67 -1.0
688,510 + GFF620 0.73 -1.0
688,558 + GFF620 0.76 -0.0
688,569 + GFF620 0.76 -1.6
688,711 + GFF620 0.84 -0.2
688,712 - GFF620 0.84 -1.0
688,756 + GFF620 0.86 -1.0
688,834 + -1.0
688,835 - -1.3
688,836 + -2.2
688,836 + -1.6
688,847 + +0.3
689,013 + -1.0
689,032 + -1.0
689,033 - -0.2
689,121 + GFF621 0.13 -1.6
689,121 + GFF621 0.13 -0.8
689,121 + GFF621 0.13 -0.0
689,122 - GFF621 0.14 -0.3
689,131 + GFF621 0.15 -0.3
689,132 - GFF621 0.15 -0.7
689,258 + GFF621 0.31 -0.5
689,258 + GFF621 0.31 +0.1
689,258 + GFF621 0.31 -3.2
689,258 + GFF621 0.31 +1.3
689,258 + GFF621 0.31 +0.2
689,258 + GFF621 0.31 +0.2
689,258 + GFF621 0.31 +0.6
689,258 + GFF621 0.31 -1.0
689,258 + GFF621 0.31 -0.3
689,258 + GFF621 0.31 -0.2
689,258 + GFF621 0.31 -0.7
689,259 - GFF621 0.31 +0.2
689,259 - GFF621 0.31 -0.3
689,259 - GFF621 0.31 -0.0
689,259 - GFF621 0.31 -1.2
689,259 - GFF621 0.31 +1.4
689,259 - GFF621 0.31 +1.0
689,262 + GFF621 0.31 -0.5
689,262 + GFF621 0.31 -1.0
689,262 + GFF621 0.31 -1.0
689,263 - GFF621 0.31 -0.0
689,263 - GFF621 0.31 -2.3
689,271 - GFF621 0.32 -0.2
689,285 - GFF621 0.34 -1.5
689,367 + GFF621 0.44 -1.0
689,530 + GFF621 0.65 +0.5
689,531 - GFF621 0.65 +1.3
689,566 + GFF621 0.70 -1.0
689,567 - GFF621 0.70 -1.0
689,570 + GFF621 0.70 -0.1
689,570 + GFF621 0.70 +0.2
689,570 + GFF621 0.70 -0.2
689,570 + GFF621 0.70 -0.1
689,570 + GFF621 0.70 -1.6
689,570 + GFF621 0.70 +0.5
689,571 - GFF621 0.70 -1.0
689,571 - GFF621 0.70 +0.8
689,571 - GFF621 0.70 -1.0
689,713 + GFF621 0.88 -1.0
689,714 - GFF621 0.88 -1.8
689,728 + +0.9
689,748 + -0.0
689,748 + -0.0
689,748 + -0.4
689,749 - -0.8
689,894 + -0.5
689,943 + GFF622 0.12 -0.2

Or see this region's nucleotide sequence