Strain Fitness in Methylophilus sp. DMC18 around GFF585

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF584 and GFF585 overlap by 19 nucleotidesGFF585 and GFF586 are separated by 133 nucleotides GFF584 - CDP-glucose 4,6-dehydratase, at 642,962 to 644,041 GFF584 GFF585 - Glucose-1-phosphate cytidylyltransferase, at 644,023 to 644,796 GFF585 GFF586 - ATP-dependent DNA helicase Rep, at 644,930 to 646,954 GFF586 Position (kb) 644 645Strain fitness (log2 ratio) -3 -2 -1 0 1at 643.081 kb on - strand, within GFF584at 643.088 kb on - strand, within GFF584at 643.088 kb on - strand, within GFF584at 643.088 kb on - strand, within GFF584at 643.139 kb on + strand, within GFF584at 643.140 kb on - strand, within GFF584at 643.140 kb on - strand, within GFF584at 643.140 kb on - strand, within GFF584at 643.197 kb on - strand, within GFF584at 643.197 kb on - strand, within GFF584at 643.263 kb on + strand, within GFF584at 643.264 kb on - strand, within GFF584at 643.264 kb on - strand, within GFF584at 643.264 kb on - strand, within GFF584at 643.265 kb on + strand, within GFF584at 643.266 kb on - strand, within GFF584at 643.266 kb on - strand, within GFF584at 643.266 kb on - strand, within GFF584at 643.266 kb on - strand, within GFF584at 643.282 kb on - strand, within GFF584at 643.282 kb on - strand, within GFF584at 643.306 kb on - strand, within GFF584at 643.306 kb on - strand, within GFF584at 643.306 kb on - strand, within GFF584at 643.306 kb on - strand, within GFF584at 643.306 kb on - strand, within GFF584at 643.306 kb on - strand, within GFF584at 643.312 kb on + strand, within GFF584at 643.313 kb on - strand, within GFF584at 643.313 kb on - strand, within GFF584at 643.343 kb on - strand, within GFF584at 643.385 kb on - strand, within GFF584at 643.395 kb on - strand, within GFF584at 643.410 kb on - strand, within GFF584at 643.410 kb on - strand, within GFF584at 643.467 kb on - strand, within GFF584at 643.487 kb on - strand, within GFF584at 643.487 kb on - strand, within GFF584at 643.487 kb on - strand, within GFF584at 643.487 kb on - strand, within GFF584at 643.487 kb on - strand, within GFF584at 643.487 kb on - strand, within GFF584at 643.489 kb on - strand, within GFF584at 643.489 kb on - strand, within GFF584at 643.493 kb on - strand, within GFF584at 643.529 kb on - strand, within GFF584at 643.533 kb on - strand, within GFF584at 643.553 kb on - strand, within GFF584at 643.553 kb on - strand, within GFF584at 643.561 kb on - strand, within GFF584at 643.597 kb on - strand, within GFF584at 643.616 kb on - strand, within GFF584at 643.647 kb on - strand, within GFF584at 643.647 kb on - strand, within GFF584at 643.647 kb on - strand, within GFF584at 643.647 kb on - strand, within GFF584at 643.647 kb on - strand, within GFF584at 643.647 kb on - strand, within GFF584at 643.647 kb on - strand, within GFF584at 643.647 kb on - strand, within GFF584at 643.647 kb on - strand, within GFF584at 643.647 kb on - strand, within GFF584at 643.651 kb on + strand, within GFF584at 643.652 kb on - strand, within GFF584at 643.676 kb on - strand, within GFF584at 643.676 kb on - strand, within GFF584at 643.695 kb on - strand, within GFF584at 643.695 kb on - strand, within GFF584at 643.695 kb on - strand, within GFF584at 643.695 kb on - strand, within GFF584at 643.720 kb on - strand, within GFF584at 643.736 kb on - strand, within GFF584at 643.747 kb on - strand, within GFF584at 643.754 kb on + strand, within GFF584at 643.813 kb on + strand, within GFF584at 643.814 kb on - strand, within GFF584at 643.814 kb on - strand, within GFF584at 643.833 kb on - strand, within GFF584at 643.880 kb on - strand, within GFF584at 643.898 kb on - strand, within GFF584at 643.949 kb on + strandat 643.950 kb on - strandat 643.950 kb on - strandat 643.950 kb on - strandat 643.950 kb on - strandat 643.956 kb on - strandat 643.956 kb on - strandat 643.956 kb on - strandat 644.003 kb on - strandat 644.003 kb on - strandat 644.090 kb on - strandat 644.090 kb on - strandat 644.153 kb on - strand, within GFF585at 644.153 kb on - strand, within GFF585at 644.153 kb on - strand, within GFF585at 644.185 kb on - strand, within GFF585at 644.199 kb on + strand, within GFF585at 644.200 kb on - strand, within GFF585at 644.200 kb on - strand, within GFF585at 644.200 kb on - strand, within GFF585at 644.246 kb on - strand, within GFF585at 644.263 kb on - strand, within GFF585at 644.285 kb on - strand, within GFF585at 644.285 kb on - strand, within GFF585at 644.296 kb on - strand, within GFF585at 644.296 kb on - strand, within GFF585at 644.296 kb on - strand, within GFF585at 644.296 kb on - strand, within GFF585at 644.319 kb on + strand, within GFF585at 644.320 kb on - strand, within GFF585at 644.320 kb on - strand, within GFF585at 644.320 kb on - strand, within GFF585at 644.330 kb on + strand, within GFF585at 644.331 kb on - strand, within GFF585at 644.331 kb on - strand, within GFF585at 644.331 kb on - strand, within GFF585at 644.331 kb on - strand, within GFF585at 644.340 kb on + strand, within GFF585at 644.368 kb on - strand, within GFF585at 644.396 kb on - strand, within GFF585at 644.396 kb on - strand, within GFF585at 644.396 kb on - strand, within GFF585at 644.396 kb on - strand, within GFF585at 644.396 kb on - strand, within GFF585at 644.396 kb on - strand, within GFF585at 644.397 kb on + strand, within GFF585at 644.398 kb on - strand, within GFF585at 644.398 kb on - strand, within GFF585at 644.417 kb on + strand, within GFF585at 644.417 kb on + strand, within GFF585at 644.417 kb on + strand, within GFF585at 644.417 kb on + strand, within GFF585at 644.417 kb on + strand, within GFF585at 644.417 kb on + strand, within GFF585at 644.418 kb on - strand, within GFF585at 644.418 kb on - strand, within GFF585at 644.450 kb on + strand, within GFF585at 644.450 kb on + strand, within GFF585at 644.450 kb on + strand, within GFF585at 644.451 kb on - strand, within GFF585at 644.451 kb on - strand, within GFF585at 644.451 kb on - strand, within GFF585at 644.451 kb on - strand, within GFF585at 644.458 kb on + strand, within GFF585at 644.459 kb on - strand, within GFF585at 644.459 kb on - strand, within GFF585at 644.459 kb on - strand, within GFF585at 644.467 kb on + strand, within GFF585at 644.500 kb on - strand, within GFF585at 644.504 kb on - strand, within GFF585at 644.557 kb on - strand, within GFF585at 644.557 kb on - strand, within GFF585at 644.575 kb on + strand, within GFF585at 644.576 kb on - strand, within GFF585at 644.576 kb on - strand, within GFF585at 644.576 kb on - strand, within GFF585at 644.609 kb on + strand, within GFF585at 644.609 kb on + strand, within GFF585at 644.610 kb on - strand, within GFF585at 644.610 kb on - strand, within GFF585at 644.617 kb on - strand, within GFF585at 644.621 kb on - strand, within GFF585at 644.621 kb on - strand, within GFF585at 644.621 kb on - strand, within GFF585at 644.625 kb on - strand, within GFF585at 644.625 kb on - strand, within GFF585at 644.631 kb on + strand, within GFF585at 644.631 kb on + strand, within GFF585at 644.632 kb on - strand, within GFF585at 644.632 kb on - strand, within GFF585at 644.632 kb on - strand, within GFF585at 644.666 kb on + strand, within GFF585at 644.667 kb on - strand, within GFF585at 644.676 kb on - strand, within GFF585at 644.677 kb on + strand, within GFF585at 644.678 kb on - strand, within GFF585at 644.699 kb on - strand, within GFF585at 644.760 kb on + strandat 644.761 kb on - strandat 644.761 kb on - strandat 644.768 kb on - strandat 644.782 kb on + strandat 644.783 kb on - strandat 644.804 kb on + strandat 644.804 kb on + strandat 644.805 kb on - strandat 644.807 kb on - strandat 644.807 kb on - strandat 644.807 kb on - strandat 644.816 kb on - strandat 644.816 kb on - strandat 644.830 kb on - strandat 644.831 kb on + strandat 644.831 kb on + strandat 644.877 kb on - strandat 644.877 kb on - strandat 644.877 kb on - strandat 644.880 kb on + strandat 644.880 kb on + strandat 644.881 kb on - strandat 644.881 kb on - strandat 644.938 kb on + strandat 644.938 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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643,081 - GFF584 0.11 -1.5
643,088 - GFF584 0.12 -1.4
643,088 - GFF584 0.12 -1.3
643,088 - GFF584 0.12 -0.0
643,139 + GFF584 0.16 -1.0
643,140 - GFF584 0.16 -1.0
643,140 - GFF584 0.16 -1.0
643,140 - GFF584 0.16 -2.7
643,197 - GFF584 0.22 -1.3
643,197 - GFF584 0.22 -1.4
643,263 + GFF584 0.28 -0.4
643,264 - GFF584 0.28 -1.1
643,264 - GFF584 0.28 -1.9
643,264 - GFF584 0.28 -1.6
643,265 + GFF584 0.28 -1.0
643,266 - GFF584 0.28 -0.5
643,266 - GFF584 0.28 -0.2
643,266 - GFF584 0.28 -1.2
643,266 - GFF584 0.28 -0.9
643,282 - GFF584 0.30 -1.0
643,282 - GFF584 0.30 -1.0
643,306 - GFF584 0.32 -0.2
643,306 - GFF584 0.32 -1.0
643,306 - GFF584 0.32 +0.6
643,306 - GFF584 0.32 -0.3
643,306 - GFF584 0.32 -1.8
643,306 - GFF584 0.32 -1.0
643,312 + GFF584 0.32 -1.3
643,313 - GFF584 0.33 -2.5
643,313 - GFF584 0.33 -1.8
643,343 - GFF584 0.35 +0.3
643,385 - GFF584 0.39 +0.4
643,395 - GFF584 0.40 -1.1
643,410 - GFF584 0.41 -1.6
643,410 - GFF584 0.41 -0.0
643,467 - GFF584 0.47 -0.0
643,487 - GFF584 0.49 -0.3
643,487 - GFF584 0.49 -0.3
643,487 - GFF584 0.49 -1.2
643,487 - GFF584 0.49 -2.0
643,487 - GFF584 0.49 -0.0
643,487 - GFF584 0.49 -1.8
643,489 - GFF584 0.49 -1.0
643,489 - GFF584 0.49 -0.9
643,493 - GFF584 0.49 -1.0
643,529 - GFF584 0.53 -0.0
643,533 - GFF584 0.53 -0.0
643,553 - GFF584 0.55 -1.0
643,553 - GFF584 0.55 -0.3
643,561 - GFF584 0.55 -0.2
643,597 - GFF584 0.59 +0.6
643,616 - GFF584 0.61 -0.2
643,647 - GFF584 0.63 -0.3
643,647 - GFF584 0.63 -2.2
643,647 - GFF584 0.63 -1.8
643,647 - GFF584 0.63 +0.1
643,647 - GFF584 0.63 -1.8
643,647 - GFF584 0.63 -2.5
643,647 - GFF584 0.63 -0.0
643,647 - GFF584 0.63 -0.2
643,647 - GFF584 0.63 -1.3
643,647 - GFF584 0.63 -1.2
643,651 + GFF584 0.64 -1.1
643,652 - GFF584 0.64 -0.9
643,676 - GFF584 0.66 -0.9
643,676 - GFF584 0.66 -0.9
643,695 - GFF584 0.68 -0.0
643,695 - GFF584 0.68 -0.2
643,695 - GFF584 0.68 -0.5
643,695 - GFF584 0.68 -2.2
643,720 - GFF584 0.70 -1.0
643,736 - GFF584 0.72 -0.9
643,747 - GFF584 0.73 -1.1
643,754 + GFF584 0.73 +0.3
643,813 + GFF584 0.79 -1.8
643,814 - GFF584 0.79 +0.4
643,814 - GFF584 0.79 -3.4
643,833 - GFF584 0.81 -2.3
643,880 - GFF584 0.85 -0.0
643,898 - GFF584 0.87 -1.8
643,949 + -0.0
643,950 - -1.0
643,950 - -1.0
643,950 - -0.8
643,950 - -0.8
643,956 - -1.0
643,956 - -0.6
643,956 - -0.6
644,003 - -1.0
644,003 - -0.2
644,090 - -1.3
644,090 - -0.0
644,153 - GFF585 0.17 -1.0
644,153 - GFF585 0.17 -1.0
644,153 - GFF585 0.17 -1.0
644,185 - GFF585 0.21 +0.1
644,199 + GFF585 0.23 -1.0
644,200 - GFF585 0.23 -1.6
644,200 - GFF585 0.23 -1.3
644,200 - GFF585 0.23 -0.6
644,246 - GFF585 0.29 -1.6
644,263 - GFF585 0.31 -1.6
644,285 - GFF585 0.34 -1.0
644,285 - GFF585 0.34 -1.1
644,296 - GFF585 0.35 -1.0
644,296 - GFF585 0.35 -1.3
644,296 - GFF585 0.35 -1.4
644,296 - GFF585 0.35 +0.1
644,319 + GFF585 0.38 +0.6
644,320 - GFF585 0.38 -1.8
644,320 - GFF585 0.38 -0.3
644,320 - GFF585 0.38 -1.6
644,330 + GFF585 0.40 -0.0
644,331 - GFF585 0.40 -1.0
644,331 - GFF585 0.40 -1.5
644,331 - GFF585 0.40 -2.6
644,331 - GFF585 0.40 -0.6
644,340 + GFF585 0.41 -2.2
644,368 - GFF585 0.45 -0.0
644,396 - GFF585 0.48 -1.1
644,396 - GFF585 0.48 -0.5
644,396 - GFF585 0.48 +1.0
644,396 - GFF585 0.48 -1.3
644,396 - GFF585 0.48 +0.6
644,396 - GFF585 0.48 -1.2
644,397 + GFF585 0.48 -2.3
644,398 - GFF585 0.48 -1.0
644,398 - GFF585 0.48 -0.0
644,417 + GFF585 0.51 -1.3
644,417 + GFF585 0.51 -1.6
644,417 + GFF585 0.51 -0.8
644,417 + GFF585 0.51 -0.0
644,417 + GFF585 0.51 -0.3
644,417 + GFF585 0.51 -0.8
644,418 - GFF585 0.51 -0.6
644,418 - GFF585 0.51 -1.4
644,450 + GFF585 0.55 -1.0
644,450 + GFF585 0.55 -0.0
644,450 + GFF585 0.55 -0.0
644,451 - GFF585 0.55 -2.6
644,451 - GFF585 0.55 -1.3
644,451 - GFF585 0.55 +0.6
644,451 - GFF585 0.55 -0.8
644,458 + GFF585 0.56 -1.0
644,459 - GFF585 0.56 -0.8
644,459 - GFF585 0.56 -0.2
644,459 - GFF585 0.56 -1.6
644,467 + GFF585 0.57 -0.3
644,500 - GFF585 0.62 -1.2
644,504 - GFF585 0.62 -1.0
644,557 - GFF585 0.69 -0.6
644,557 - GFF585 0.69 -1.0
644,575 + GFF585 0.71 +0.7
644,576 - GFF585 0.71 -1.8
644,576 - GFF585 0.71 -1.3
644,576 - GFF585 0.71 -0.5
644,609 + GFF585 0.76 -1.0
644,609 + GFF585 0.76 -1.5
644,610 - GFF585 0.76 -1.2
644,610 - GFF585 0.76 +0.3
644,617 - GFF585 0.77 -1.0
644,621 - GFF585 0.77 +0.2
644,621 - GFF585 0.77 -0.0
644,621 - GFF585 0.77 -1.6
644,625 - GFF585 0.78 -0.4
644,625 - GFF585 0.78 -1.0
644,631 + GFF585 0.79 +0.6
644,631 + GFF585 0.79 -1.0
644,632 - GFF585 0.79 -1.5
644,632 - GFF585 0.79 -1.0
644,632 - GFF585 0.79 -0.3
644,666 + GFF585 0.83 -0.0
644,667 - GFF585 0.83 -1.6
644,676 - GFF585 0.84 -0.2
644,677 + GFF585 0.84 -0.3
644,678 - GFF585 0.85 -1.5
644,699 - GFF585 0.87 -1.1
644,760 + -1.8
644,761 - -1.3
644,761 - -0.0
644,768 - -2.0
644,782 + -0.0
644,783 - -1.8
644,804 + -1.3
644,804 + -0.7
644,805 - -0.5
644,807 - -1.9
644,807 - -2.3
644,807 - -0.8
644,816 - -1.0
644,816 - -2.0
644,830 - -0.1
644,831 + +1.0
644,831 + -1.5
644,877 - -0.1
644,877 - -1.6
644,877 - -0.0
644,880 + +1.3
644,880 + -0.5
644,881 - +0.6
644,881 - -1.2
644,938 + +0.5
644,938 + -1.0

Or see this region's nucleotide sequence