Strain Fitness in Methylophilus sp. DMC18 around GFF57

Experiment: Methanol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF56 and GFF57 overlap by 4 nucleotidesGFF57 and GFF58 are separated by 42 nucleotides GFF56 - hypothetical protein, at 65,321 to 66,700 GFF56 GFF57 - Response regulator UvrY, at 66,697 to 67,335 GFF57 GFF58 - Protein UmuC, at 67,378 to 68,688 GFF58 Position (kb) 66 67 68Strain fitness (log2 ratio) -2 -1 0 1at 65.739 kb on + strand, within GFF56at 65.771 kb on - strand, within GFF56at 65.783 kb on - strand, within GFF56at 65.812 kb on + strand, within GFF56at 65.812 kb on + strand, within GFF56at 65.812 kb on + strand, within GFF56at 65.812 kb on + strand, within GFF56at 65.813 kb on - strand, within GFF56at 65.870 kb on + strand, within GFF56at 65.902 kb on + strand, within GFF56at 65.911 kb on + strand, within GFF56at 66.011 kb on - strand, within GFF56at 66.011 kb on - strand, within GFF56at 66.067 kb on + strand, within GFF56at 66.132 kb on - strand, within GFF56at 66.223 kb on + strand, within GFF56at 66.267 kb on + strand, within GFF56at 66.267 kb on + strand, within GFF56at 66.352 kb on + strand, within GFF56at 66.352 kb on + strand, within GFF56at 66.353 kb on - strand, within GFF56at 66.353 kb on - strand, within GFF56at 66.369 kb on + strand, within GFF56at 66.373 kb on + strand, within GFF56at 66.373 kb on + strand, within GFF56at 66.416 kb on + strand, within GFF56at 66.445 kb on + strand, within GFF56at 66.509 kb on + strand, within GFF56at 66.509 kb on + strand, within GFF56at 66.619 kb on + strandat 66.619 kb on + strandat 66.619 kb on + strandat 66.625 kb on + strandat 66.651 kb on + strandat 66.719 kb on + strandat 66.719 kb on + strandat 66.719 kb on + strandat 66.719 kb on + strandat 66.720 kb on - strandat 66.720 kb on - strandat 66.817 kb on + strand, within GFF57at 66.826 kb on + strand, within GFF57at 66.887 kb on + strand, within GFF57at 67.000 kb on + strand, within GFF57at 67.009 kb on - strand, within GFF57at 67.034 kb on + strand, within GFF57at 67.034 kb on + strand, within GFF57at 67.034 kb on + strand, within GFF57at 67.074 kb on - strand, within GFF57at 67.103 kb on + strand, within GFF57at 67.126 kb on - strand, within GFF57at 67.244 kb on - strand, within GFF57at 67.244 kb on - strand, within GFF57at 67.334 kb on - strandat 67.334 kb on - strandat 67.334 kb on - strandat 67.344 kb on + strandat 67.344 kb on + strandat 67.345 kb on - strandat 67.349 kb on + strandat 67.350 kb on - strandat 67.350 kb on - strandat 67.350 kb on - strandat 67.350 kb on - strandat 67.350 kb on - strandat 67.358 kb on + strandat 67.358 kb on + strandat 67.359 kb on - strandat 67.365 kb on + strandat 67.366 kb on - strandat 67.366 kb on - strandat 67.373 kb on + strandat 67.374 kb on - strandat 67.413 kb on + strandat 67.413 kb on + strandat 67.413 kb on + strandat 67.414 kb on - strandat 67.414 kb on - strandat 67.414 kb on - strandat 67.414 kb on - strandat 67.415 kb on + strandat 67.485 kb on + strandat 67.486 kb on - strandat 67.486 kb on - strandat 67.579 kb on + strand, within GFF58at 67.579 kb on + strand, within GFF58at 67.579 kb on + strand, within GFF58at 67.579 kb on + strand, within GFF58at 67.629 kb on - strand, within GFF58at 67.646 kb on + strand, within GFF58at 67.736 kb on + strand, within GFF58at 67.775 kb on + strand, within GFF58at 67.775 kb on + strand, within GFF58at 67.775 kb on + strand, within GFF58at 67.775 kb on + strand, within GFF58at 67.775 kb on + strand, within GFF58at 67.775 kb on + strand, within GFF58at 67.775 kb on + strand, within GFF58at 67.775 kb on + strand, within GFF58at 67.775 kb on + strand, within GFF58at 67.776 kb on - strand, within GFF58at 67.776 kb on - strand, within GFF58at 67.776 kb on - strand, within GFF58at 67.776 kb on - strand, within GFF58at 67.776 kb on - strand, within GFF58at 67.776 kb on - strand, within GFF58at 67.776 kb on - strand, within GFF58at 67.776 kb on - strand, within GFF58at 67.776 kb on - strand, within GFF58at 67.776 kb on - strand, within GFF58at 67.776 kb on - strand, within GFF58at 67.776 kb on - strand, within GFF58at 67.776 kb on - strand, within GFF58at 67.776 kb on - strand, within GFF58at 67.781 kb on + strand, within GFF58at 67.781 kb on + strand, within GFF58at 67.781 kb on + strand, within GFF58at 67.781 kb on + strand, within GFF58at 67.781 kb on + strand, within GFF58at 67.781 kb on + strand, within GFF58at 67.781 kb on + strand, within GFF58at 67.782 kb on - strand, within GFF58at 67.782 kb on - strand, within GFF58at 67.782 kb on - strand, within GFF58at 67.813 kb on + strand, within GFF58at 67.838 kb on + strand, within GFF58at 67.838 kb on + strand, within GFF58at 67.838 kb on + strand, within GFF58at 67.839 kb on - strand, within GFF58at 67.993 kb on - strand, within GFF58at 67.993 kb on - strand, within GFF58at 68.024 kb on + strand, within GFF58at 68.025 kb on - strand, within GFF58at 68.025 kb on - strand, within GFF58at 68.036 kb on + strand, within GFF58at 68.116 kb on + strand, within GFF58at 68.117 kb on - strand, within GFF58at 68.117 kb on - strand, within GFF58at 68.137 kb on + strand, within GFF58at 68.138 kb on - strand, within GFF58at 68.138 kb on - strand, within GFF58at 68.138 kb on - strand, within GFF58at 68.217 kb on + strand, within GFF58at 68.300 kb on + strand, within GFF58at 68.301 kb on - strand, within GFF58

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
remove
65,739 + GFF56 0.30 +0.6
65,771 - GFF56 0.33 -1.0
65,783 - GFF56 0.33 -0.2
65,812 + GFF56 0.36 +1.4
65,812 + GFF56 0.36 -1.3
65,812 + GFF56 0.36 -1.0
65,812 + GFF56 0.36 -1.0
65,813 - GFF56 0.36 +0.0
65,870 + GFF56 0.40 +0.7
65,902 + GFF56 0.42 +0.7
65,911 + GFF56 0.43 -0.3
66,011 - GFF56 0.50 +0.3
66,011 - GFF56 0.50 -0.6
66,067 + GFF56 0.54 -0.6
66,132 - GFF56 0.59 -2.0
66,223 + GFF56 0.65 -1.9
66,267 + GFF56 0.69 -0.6
66,267 + GFF56 0.69 +0.6
66,352 + GFF56 0.75 -0.6
66,352 + GFF56 0.75 +0.8
66,353 - GFF56 0.75 -1.0
66,353 - GFF56 0.75 +0.6
66,369 + GFF56 0.76 -1.2
66,373 + GFF56 0.76 +0.7
66,373 + GFF56 0.76 -1.0
66,416 + GFF56 0.79 -1.0
66,445 + GFF56 0.81 -0.4
66,509 + GFF56 0.86 -1.1
66,509 + GFF56 0.86 +0.0
66,619 + -1.0
66,619 + -1.3
66,619 + -0.6
66,625 + +0.0
66,651 + -0.6
66,719 + -1.2
66,719 + -1.3
66,719 + -1.8
66,719 + -0.2
66,720 - +0.0
66,720 - -1.3
66,817 + GFF57 0.19 -2.0
66,826 + GFF57 0.20 -1.9
66,887 + GFF57 0.30 +0.0
67,000 + GFF57 0.47 -1.2
67,009 - GFF57 0.49 -1.0
67,034 + GFF57 0.53 -0.8
67,034 + GFF57 0.53 -1.3
67,034 + GFF57 0.53 -2.2
67,074 - GFF57 0.59 -1.0
67,103 + GFF57 0.64 -1.6
67,126 - GFF57 0.67 -1.3
67,244 - GFF57 0.86 -1.0
67,244 - GFF57 0.86 -1.6
67,334 - -0.3
67,334 - -0.6
67,334 - +0.6
67,344 + -0.9
67,344 + -1.6
67,345 - -1.0
67,349 + -1.9
67,350 - +0.2
67,350 - -0.8
67,350 - -1.6
67,350 - -0.6
67,350 - -1.6
67,358 + -0.7
67,358 + -0.6
67,359 - +0.1
67,365 + +0.3
67,366 - +0.3
67,366 - +0.0
67,373 + -1.1
67,374 - -1.8
67,413 + +0.0
67,413 + +0.0
67,413 + -0.3
67,414 - +1.0
67,414 - -0.2
67,414 - -0.6
67,414 - +1.6
67,415 + +0.3
67,485 + -0.3
67,486 - +0.7
67,486 - -1.8
67,579 + GFF58 0.15 -1.6
67,579 + GFF58 0.15 -1.6
67,579 + GFF58 0.15 -0.8
67,579 + GFF58 0.15 +0.1
67,629 - GFF58 0.19 -1.0
67,646 + GFF58 0.20 -0.2
67,736 + GFF58 0.27 -1.8
67,775 + GFF58 0.30 -1.3
67,775 + GFF58 0.30 +0.0
67,775 + GFF58 0.30 +0.2
67,775 + GFF58 0.30 +0.7
67,775 + GFF58 0.30 -0.4
67,775 + GFF58 0.30 +0.1
67,775 + GFF58 0.30 -1.0
67,775 + GFF58 0.30 +0.3
67,775 + GFF58 0.30 +0.1
67,776 - GFF58 0.30 -0.2
67,776 - GFF58 0.30 -0.9
67,776 - GFF58 0.30 -0.3
67,776 - GFF58 0.30 +0.2
67,776 - GFF58 0.30 -0.5
67,776 - GFF58 0.30 +0.8
67,776 - GFF58 0.30 +0.3
67,776 - GFF58 0.30 +1.0
67,776 - GFF58 0.30 -0.1
67,776 - GFF58 0.30 -0.4
67,776 - GFF58 0.30 -1.0
67,776 - GFF58 0.30 +0.6
67,776 - GFF58 0.30 -0.6
67,776 - GFF58 0.30 +0.6
67,781 + GFF58 0.31 +0.0
67,781 + GFF58 0.31 +0.0
67,781 + GFF58 0.31 +0.0
67,781 + GFF58 0.31 +0.1
67,781 + GFF58 0.31 -1.3
67,781 + GFF58 0.31 -0.7
67,781 + GFF58 0.31 -0.5
67,782 - GFF58 0.31 -0.3
67,782 - GFF58 0.31 +0.1
67,782 - GFF58 0.31 +0.0
67,813 + GFF58 0.33 +0.6
67,838 + GFF58 0.35 -0.1
67,838 + GFF58 0.35 +0.0
67,838 + GFF58 0.35 -0.9
67,839 - GFF58 0.35 -1.3
67,993 - GFF58 0.47 -0.3
67,993 - GFF58 0.47 -1.6
68,024 + GFF58 0.49 -0.3
68,025 - GFF58 0.49 +0.2
68,025 - GFF58 0.49 +0.7
68,036 + GFF58 0.50 -1.2
68,116 + GFF58 0.56 -0.4
68,117 - GFF58 0.56 -1.3
68,117 - GFF58 0.56 -0.9
68,137 + GFF58 0.58 -0.5
68,138 - GFF58 0.58 -0.2
68,138 - GFF58 0.58 +0.0
68,138 - GFF58 0.58 +0.4
68,217 + GFF58 0.64 -0.7
68,300 + GFF58 0.70 +0.3
68,301 - GFF58 0.70 -0.7

Or see this region's nucleotide sequence