Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF457 and GFF458 are separated by 194 nucleotides GFF458 and GFF459 are separated by 118 nucleotides
GFF457 - Adenylosuccinate lyase, at 499,071 to 500,444
GFF457
GFF458 - hypothetical protein, at 500,639 to 501,310
GFF458
GFF459 - hypothetical protein, at 501,429 to 503,357
GFF459
Position (kb) 500
501
502 Strain fitness (log2 ratio) -2
-1
0
1
2 at 500.503 kb on - strand at 500.539 kb on + strand at 500.540 kb on - strand at 500.540 kb on - strand at 500.610 kb on + strand at 500.611 kb on - strand at 500.631 kb on + strand at 500.632 kb on - strand at 500.632 kb on - strand at 500.671 kb on - strand at 500.671 kb on - strand at 500.682 kb on + strand at 500.682 kb on + strand at 500.682 kb on + strand at 500.682 kb on + strand at 500.683 kb on - strand at 500.683 kb on - strand at 500.703 kb on + strand at 500.703 kb on + strand at 500.704 kb on - strand at 500.704 kb on - strand at 500.729 kb on + strand, within GFF458 at 500.729 kb on + strand, within GFF458 at 500.730 kb on - strand, within GFF458 at 500.730 kb on - strand, within GFF458 at 500.730 kb on - strand, within GFF458 at 500.730 kb on - strand, within GFF458 at 500.730 kb on - strand, within GFF458 at 500.780 kb on + strand, within GFF458 at 500.866 kb on + strand, within GFF458 at 500.897 kb on + strand, within GFF458 at 500.897 kb on + strand, within GFF458 at 500.899 kb on + strand, within GFF458 at 500.900 kb on - strand, within GFF458 at 500.900 kb on - strand, within GFF458 at 500.900 kb on - strand, within GFF458 at 500.900 kb on - strand, within GFF458 at 500.921 kb on + strand, within GFF458 at 500.921 kb on + strand, within GFF458 at 500.981 kb on - strand, within GFF458 at 500.990 kb on + strand, within GFF458 at 500.991 kb on - strand, within GFF458 at 500.991 kb on - strand, within GFF458 at 500.991 kb on - strand, within GFF458 at 500.992 kb on + strand, within GFF458 at 500.992 kb on + strand, within GFF458 at 500.992 kb on + strand, within GFF458 at 500.992 kb on + strand, within GFF458 at 500.993 kb on - strand, within GFF458 at 500.993 kb on - strand, within GFF458 at 501.025 kb on + strand, within GFF458 at 501.030 kb on + strand, within GFF458 at 501.031 kb on - strand, within GFF458 at 501.041 kb on + strand, within GFF458 at 501.041 kb on + strand, within GFF458 at 501.041 kb on + strand, within GFF458 at 501.041 kb on + strand, within GFF458 at 501.042 kb on - strand, within GFF458 at 501.042 kb on - strand, within GFF458 at 501.095 kb on + strand, within GFF458 at 501.095 kb on + strand, within GFF458 at 501.095 kb on + strand, within GFF458 at 501.096 kb on - strand, within GFF458 at 501.096 kb on - strand, within GFF458 at 501.096 kb on - strand, within GFF458 at 501.096 kb on - strand, within GFF458 at 501.098 kb on + strand, within GFF458 at 501.098 kb on + strand, within GFF458 at 501.098 kb on + strand, within GFF458 at 501.099 kb on - strand, within GFF458 at 501.109 kb on + strand, within GFF458 at 501.223 kb on + strand, within GFF458 at 501.234 kb on + strand, within GFF458 at 501.234 kb on + strand, within GFF458 at 501.234 kb on + strand, within GFF458 at 501.329 kb on + strand at 501.329 kb on + strand at 501.329 kb on + strand at 501.330 kb on - strand at 501.330 kb on - strand at 501.330 kb on - strand at 501.330 kb on - strand at 501.330 kb on - strand at 501.331 kb on - strand at 501.335 kb on + strand at 501.335 kb on + strand at 501.336 kb on - strand at 501.339 kb on - strand at 501.339 kb on - strand at 501.354 kb on + strand at 501.355 kb on - strand at 501.366 kb on + strand at 501.366 kb on + strand at 501.366 kb on + strand at 501.367 kb on - strand at 501.367 kb on - strand at 501.367 kb on - strand at 501.414 kb on + strand at 501.414 kb on + strand at 501.414 kb on + strand at 501.415 kb on - strand at 501.436 kb on + strand at 501.437 kb on - strand at 501.448 kb on + strand at 501.448 kb on + strand at 501.448 kb on + strand at 501.448 kb on + strand at 501.448 kb on + strand at 501.449 kb on - strand at 501.449 kb on - strand at 501.449 kb on - strand at 501.449 kb on - strand at 501.510 kb on + strand at 501.510 kb on + strand at 501.510 kb on + strand at 501.511 kb on - strand at 501.511 kb on - strand at 501.512 kb on + strand at 501.512 kb on + strand at 501.525 kb on + strand at 501.525 kb on + strand at 501.525 kb on + strand at 501.526 kb on - strand at 501.526 kb on - strand at 501.526 kb on - strand at 501.527 kb on + strand at 501.527 kb on + strand at 501.528 kb on - strand at 501.528 kb on - strand at 501.541 kb on + strand at 501.542 kb on - strand at 501.560 kb on + strand at 501.581 kb on + strand at 501.581 kb on + strand at 501.581 kb on + strand at 501.582 kb on - strand at 501.654 kb on + strand, within GFF459 at 501.697 kb on + strand, within GFF459 at 501.697 kb on + strand, within GFF459 at 501.697 kb on + strand, within GFF459 at 501.698 kb on - strand, within GFF459 at 501.698 kb on - strand, within GFF459 at 501.698 kb on - strand, within GFF459 at 501.698 kb on - strand, within GFF459 at 501.785 kb on + strand, within GFF459 at 501.807 kb on + strand, within GFF459 at 501.807 kb on + strand, within GFF459 at 501.808 kb on - strand, within GFF459 at 501.808 kb on - strand, within GFF459 at 501.912 kb on + strand, within GFF459 at 501.912 kb on + strand, within GFF459 at 501.913 kb on - strand, within GFF459 at 501.928 kb on + strand, within GFF459 at 501.996 kb on - strand, within GFF459 at 501.999 kb on + strand, within GFF459 at 502.000 kb on - strand, within GFF459 at 502.000 kb on - strand, within GFF459 at 502.000 kb on - strand, within GFF459 at 502.000 kb on - strand, within GFF459 at 502.000 kb on - strand, within GFF459 at 502.004 kb on + strand, within GFF459 at 502.004 kb on + strand, within GFF459 at 502.082 kb on + strand, within GFF459 at 502.082 kb on + strand, within GFF459 at 502.082 kb on + strand, within GFF459 at 502.082 kb on + strand, within GFF459 at 502.082 kb on + strand, within GFF459 at 502.112 kb on + strand, within GFF459 at 502.113 kb on - strand, within GFF459 at 502.134 kb on + strand, within GFF459 at 502.134 kb on + strand, within GFF459 at 502.134 kb on + strand, within GFF459 at 502.135 kb on - strand, within GFF459 at 502.135 kb on - strand, within GFF459 at 502.220 kb on + strand, within GFF459 at 502.220 kb on + strand, within GFF459 at 502.220 kb on + strand, within GFF459 at 502.221 kb on - strand, within GFF459 at 502.235 kb on - strand, within GFF459 at 502.235 kb on - strand, within GFF459 at 502.275 kb on + strand, within GFF459
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 500,503 - +0.4 500,539 + -1.3 500,540 - -2.0 500,540 - -1.6 500,610 + -0.3 500,611 - +0.6 500,631 + +0.1 500,632 - -1.0 500,632 - -0.3 500,671 - -1.4 500,671 - -1.0 500,682 + -0.9 500,682 + -0.8 500,682 + -0.9 500,682 + -1.6 500,683 - -0.3 500,683 - +0.6 500,703 + +1.0 500,703 + +1.8 500,704 - +0.6 500,704 - -2.5 500,729 + GFF458 0.13 -0.7 500,729 + GFF458 0.13 -0.3 500,730 - GFF458 0.14 -0.0 500,730 - GFF458 0.14 -1.2 500,730 - GFF458 0.14 +0.1 500,730 - GFF458 0.14 -0.5 500,730 - GFF458 0.14 -1.3 500,780 + GFF458 0.21 -1.0 500,866 + GFF458 0.34 -0.3 500,897 + GFF458 0.38 -0.6 500,897 + GFF458 0.38 -0.9 500,899 + GFF458 0.39 -0.2 500,900 - GFF458 0.39 -1.2 500,900 - GFF458 0.39 -0.8 500,900 - GFF458 0.39 -1.1 500,900 - GFF458 0.39 -0.6 500,921 + GFF458 0.42 -2.5 500,921 + GFF458 0.42 -1.1 500,981 - GFF458 0.51 +0.1 500,990 + GFF458 0.52 -1.0 500,991 - GFF458 0.52 -1.3 500,991 - GFF458 0.52 -1.4 500,991 - GFF458 0.52 -2.0 500,992 + GFF458 0.53 -0.0 500,992 + GFF458 0.53 -0.8 500,992 + GFF458 0.53 -0.6 500,992 + GFF458 0.53 -1.8 500,993 - GFF458 0.53 -1.3 500,993 - GFF458 0.53 -0.9 501,025 + GFF458 0.57 +1.6 501,030 + GFF458 0.58 -1.0 501,031 - GFF458 0.58 -1.9 501,041 + GFF458 0.60 -0.9 501,041 + GFF458 0.60 -0.3 501,041 + GFF458 0.60 -1.4 501,041 + GFF458 0.60 -1.3 501,042 - GFF458 0.60 -2.5 501,042 - GFF458 0.60 +0.4 501,095 + GFF458 0.68 -0.8 501,095 + GFF458 0.68 -0.3 501,095 + GFF458 0.68 -0.6 501,096 - GFF458 0.68 -0.7 501,096 - GFF458 0.68 -1.4 501,096 - GFF458 0.68 +0.4 501,096 - GFF458 0.68 -1.6 501,098 + GFF458 0.68 -1.3 501,098 + GFF458 0.68 -0.2 501,098 + GFF458 0.68 -0.2 501,099 - GFF458 0.68 -1.2 501,109 + GFF458 0.70 +0.2 501,223 + GFF458 0.87 +0.6 501,234 + GFF458 0.89 +0.6 501,234 + GFF458 0.89 -0.9 501,234 + GFF458 0.89 -0.3 501,329 + +0.4 501,329 + -0.3 501,329 + -0.2 501,330 - -0.3 501,330 - +0.7 501,330 - -0.2 501,330 - -0.0 501,330 - +0.7 501,331 - -0.5 501,335 + +0.2 501,335 + -0.3 501,336 - -0.8 501,339 - +0.0 501,339 - -0.3 501,354 + -1.4 501,355 - -0.4 501,366 + -0.9 501,366 + -0.6 501,366 + -0.3 501,367 - -0.4 501,367 - +1.4 501,367 - -1.5 501,414 + -0.4 501,414 + -1.2 501,414 + +0.2 501,415 - +0.7 501,436 + -1.0 501,437 - -0.1 501,448 + +0.2 501,448 + -0.0 501,448 + -0.5 501,448 + -1.6 501,448 + -0.6 501,449 - -0.1 501,449 - +1.5 501,449 - -1.6 501,449 - -0.3 501,510 + -0.6 501,510 + -0.9 501,510 + +0.6 501,511 - -0.3 501,511 - -0.2 501,512 + -1.8 501,512 + +0.8 501,525 + +1.0 501,525 + -1.0 501,525 + -0.0 501,526 - +0.2 501,526 - -0.6 501,526 - +1.0 501,527 + +0.1 501,527 + +0.5 501,528 - -0.0 501,528 - +0.2 501,541 + +0.2 501,542 - +1.0 501,560 + -0.8 501,581 + -0.7 501,581 + +0.2 501,581 + +0.2 501,582 - -1.0 501,654 + GFF459 0.12 -1.1 501,697 + GFF459 0.14 -1.8 501,697 + GFF459 0.14 -1.0 501,697 + GFF459 0.14 -1.6 501,698 - GFF459 0.14 -1.3 501,698 - GFF459 0.14 -0.5 501,698 - GFF459 0.14 -0.0 501,698 - GFF459 0.14 +0.6 501,785 + GFF459 0.18 -0.6 501,807 + GFF459 0.20 -0.8 501,807 + GFF459 0.20 -1.0 501,808 - GFF459 0.20 +0.8 501,808 - GFF459 0.20 -0.2 501,912 + GFF459 0.25 +0.5 501,912 + GFF459 0.25 -1.0 501,913 - GFF459 0.25 +0.7 501,928 + GFF459 0.26 -1.3 501,996 - GFF459 0.29 +0.7 501,999 + GFF459 0.30 -1.3 502,000 - GFF459 0.30 -0.0 502,000 - GFF459 0.30 -1.5 502,000 - GFF459 0.30 -1.0 502,000 - GFF459 0.30 +1.0 502,000 - GFF459 0.30 +1.0 502,004 + GFF459 0.30 +0.2 502,004 + GFF459 0.30 -0.4 502,082 + GFF459 0.34 -0.6 502,082 + GFF459 0.34 -2.4 502,082 + GFF459 0.34 -0.2 502,082 + GFF459 0.34 -1.0 502,082 + GFF459 0.34 -1.4 502,112 + GFF459 0.35 -0.9 502,113 - GFF459 0.35 -1.0 502,134 + GFF459 0.37 -0.1 502,134 + GFF459 0.37 -0.5 502,134 + GFF459 0.37 -0.2 502,135 - GFF459 0.37 +0.2 502,135 - GFF459 0.37 -0.7 502,220 + GFF459 0.41 +0.1 502,220 + GFF459 0.41 +1.3 502,220 + GFF459 0.41 +1.0 502,221 - GFF459 0.41 +1.0 502,235 - GFF459 0.42 -1.0 502,235 - GFF459 0.42 +0.6 502,275 + GFF459 0.44 +0.2
Or see this region's nucleotide sequence