Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF443 and GFF444 are separated by 128 nucleotides GFF444 and GFF445 are separated by 233 nucleotides GFF445 and GFF446 are separated by 162 nucleotides
GFF443 - IS110 family transposase ISCARN111, at 483,965 to 484,990
GFF443
GFF444 - hypothetical protein, at 485,119 to 485,724
GFF444
GFF445 - Leucine-responsive regulatory protein, at 485,958 to 486,422
GFF445
GFF446 - 2-isopropylmalate synthase, at 486,585 to 488,279
GFF446
Position (kb) 485
486
487 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 484.961 kb on + strand at 484.984 kb on + strand at 484.984 kb on + strand at 484.984 kb on + strand at 484.984 kb on + strand at 484.984 kb on + strand at 484.984 kb on + strand at 484.985 kb on - strand at 484.985 kb on - strand at 484.985 kb on - strand at 484.985 kb on - strand at 485.029 kb on + strand at 485.029 kb on + strand at 485.030 kb on - strand at 485.030 kb on - strand at 485.046 kb on - strand at 485.101 kb on - strand at 485.104 kb on + strand at 485.115 kb on - strand at 485.129 kb on + strand at 485.170 kb on - strand at 485.170 kb on - strand at 485.196 kb on + strand, within GFF444 at 485.196 kb on + strand, within GFF444 at 485.196 kb on + strand, within GFF444 at 485.196 kb on + strand, within GFF444 at 485.248 kb on - strand, within GFF444 at 485.297 kb on + strand, within GFF444 at 485.300 kb on + strand, within GFF444 at 485.317 kb on + strand, within GFF444 at 485.335 kb on - strand, within GFF444 at 485.353 kb on - strand, within GFF444 at 485.355 kb on + strand, within GFF444 at 485.355 kb on + strand, within GFF444 at 485.355 kb on + strand, within GFF444 at 485.355 kb on + strand, within GFF444 at 485.355 kb on + strand, within GFF444 at 485.355 kb on + strand, within GFF444 at 485.355 kb on + strand, within GFF444 at 485.355 kb on + strand, within GFF444 at 485.355 kb on + strand, within GFF444 at 485.355 kb on + strand, within GFF444 at 485.358 kb on + strand, within GFF444 at 485.358 kb on + strand, within GFF444 at 485.358 kb on + strand, within GFF444 at 485.358 kb on + strand, within GFF444 at 485.358 kb on + strand, within GFF444 at 485.359 kb on - strand, within GFF444 at 485.359 kb on - strand, within GFF444 at 485.359 kb on - strand, within GFF444 at 485.359 kb on - strand, within GFF444 at 485.375 kb on + strand, within GFF444 at 485.388 kb on - strand, within GFF444 at 485.406 kb on - strand, within GFF444 at 485.427 kb on + strand, within GFF444 at 485.427 kb on + strand, within GFF444 at 485.428 kb on - strand, within GFF444 at 485.446 kb on - strand, within GFF444 at 485.476 kb on - strand, within GFF444 at 485.482 kb on + strand, within GFF444 at 485.482 kb on + strand, within GFF444 at 485.524 kb on + strand, within GFF444 at 485.524 kb on + strand, within GFF444 at 485.524 kb on + strand, within GFF444 at 485.525 kb on - strand, within GFF444 at 485.525 kb on - strand, within GFF444 at 485.541 kb on + strand, within GFF444 at 485.542 kb on - strand, within GFF444 at 485.550 kb on + strand, within GFF444 at 485.551 kb on - strand, within GFF444 at 485.551 kb on - strand, within GFF444 at 485.586 kb on + strand, within GFF444 at 485.586 kb on + strand, within GFF444 at 485.586 kb on + strand, within GFF444 at 485.587 kb on - strand, within GFF444 at 485.587 kb on - strand, within GFF444 at 485.587 kb on - strand, within GFF444 at 485.587 kb on - strand, within GFF444 at 485.590 kb on + strand, within GFF444 at 485.614 kb on - strand, within GFF444 at 485.620 kb on + strand, within GFF444 at 485.620 kb on + strand, within GFF444 at 485.620 kb on + strand, within GFF444 at 485.620 kb on + strand, within GFF444 at 485.620 kb on + strand, within GFF444 at 485.621 kb on - strand, within GFF444 at 485.621 kb on - strand, within GFF444 at 485.621 kb on - strand, within GFF444 at 485.621 kb on - strand, within GFF444 at 485.621 kb on - strand, within GFF444 at 485.621 kb on - strand, within GFF444 at 485.621 kb on - strand, within GFF444 at 485.621 kb on - strand, within GFF444 at 485.624 kb on + strand, within GFF444 at 485.624 kb on + strand, within GFF444 at 485.624 kb on + strand, within GFF444 at 485.625 kb on - strand, within GFF444 at 485.625 kb on - strand, within GFF444 at 485.625 kb on - strand, within GFF444 at 485.625 kb on - strand, within GFF444 at 485.625 kb on - strand, within GFF444 at 485.627 kb on + strand, within GFF444 at 485.627 kb on + strand, within GFF444 at 485.628 kb on - strand, within GFF444 at 485.628 kb on - strand, within GFF444 at 485.648 kb on + strand, within GFF444 at 485.648 kb on + strand, within GFF444 at 485.683 kb on - strand at 485.688 kb on + strand at 485.688 kb on + strand at 485.688 kb on + strand at 485.689 kb on - strand at 485.689 kb on - strand at 485.690 kb on + strand at 485.690 kb on + strand at 485.690 kb on + strand at 485.691 kb on - strand at 485.691 kb on - strand at 485.691 kb on - strand at 485.722 kb on + strand at 485.723 kb on - strand at 485.723 kb on - strand at 485.723 kb on - strand at 485.726 kb on + strand at 485.726 kb on + strand at 485.726 kb on + strand at 485.726 kb on + strand at 485.727 kb on - strand at 485.768 kb on + strand at 485.769 kb on - strand at 485.832 kb on + strand at 485.832 kb on + strand at 485.832 kb on + strand at 485.832 kb on + strand at 485.832 kb on + strand at 485.833 kb on - strand at 485.836 kb on + strand at 485.836 kb on + strand at 485.837 kb on - strand at 485.850 kb on + strand at 485.850 kb on + strand at 485.850 kb on + strand at 485.850 kb on + strand at 485.851 kb on - strand at 485.864 kb on + strand at 485.864 kb on + strand at 485.911 kb on + strand at 485.911 kb on + strand at 485.912 kb on - strand at 485.915 kb on + strand at 485.915 kb on + strand at 485.915 kb on + strand at 485.915 kb on + strand at 485.919 kb on + strand at 485.919 kb on + strand at 485.920 kb on - strand at 485.920 kb on - strand at 485.920 kb on - strand at 485.930 kb on + strand at 485.938 kb on - strand at 485.939 kb on + strand at 485.939 kb on + strand at 485.939 kb on + strand at 485.939 kb on + strand at 485.939 kb on + strand at 485.939 kb on + strand at 485.939 kb on + strand at 485.939 kb on + strand at 485.939 kb on + strand at 485.939 kb on + strand at 485.939 kb on + strand at 485.939 kb on + strand at 485.940 kb on - strand at 485.940 kb on - strand at 485.940 kb on - strand at 485.940 kb on - strand at 485.940 kb on - strand at 485.940 kb on - strand at 485.940 kb on - strand at 485.940 kb on - strand at 485.940 kb on - strand at 485.940 kb on - strand at 485.940 kb on - strand at 486.011 kb on + strand, within GFF445 at 486.011 kb on + strand, within GFF445 at 486.011 kb on + strand, within GFF445 at 486.012 kb on - strand, within GFF445 at 486.012 kb on - strand, within GFF445 at 486.012 kb on - strand, within GFF445 at 486.012 kb on - strand, within GFF445 at 486.012 kb on - strand, within GFF445 at 486.047 kb on + strand, within GFF445 at 486.047 kb on + strand, within GFF445 at 486.047 kb on + strand, within GFF445 at 486.048 kb on - strand, within GFF445 at 486.054 kb on + strand, within GFF445 at 486.055 kb on - strand, within GFF445 at 486.055 kb on - strand, within GFF445 at 486.068 kb on - strand, within GFF445 at 486.084 kb on + strand, within GFF445 at 486.085 kb on - strand, within GFF445 at 486.085 kb on - strand, within GFF445 at 486.085 kb on - strand, within GFF445 at 486.085 kb on - strand, within GFF445 at 486.104 kb on - strand, within GFF445 at 486.159 kb on - strand, within GFF445 at 486.240 kb on + strand, within GFF445 at 486.248 kb on + strand, within GFF445 at 486.249 kb on - strand, within GFF445 at 486.256 kb on - strand, within GFF445 at 486.256 kb on - strand, within GFF445 at 486.279 kb on + strand, within GFF445 at 486.313 kb on - strand, within GFF445 at 486.313 kb on - strand, within GFF445 at 486.366 kb on - strand, within GFF445 at 486.391 kb on - strand at 486.391 kb on - strand at 486.426 kb on + strand at 486.427 kb on - strand at 486.475 kb on + strand at 486.605 kb on + strand at 486.605 kb on + strand at 486.606 kb on - strand at 486.606 kb on - strand at 486.606 kb on - strand at 486.606 kb on - strand at 486.609 kb on + strand at 486.610 kb on - strand at 486.689 kb on + strand at 486.690 kb on - strand at 486.783 kb on - strand, within GFF446 at 486.966 kb on + strand, within GFF446 at 486.966 kb on + strand, within GFF446 at 486.966 kb on + strand, within GFF446 at 486.966 kb on + strand, within GFF446 at 486.966 kb on + strand, within GFF446 at 486.966 kb on + strand, within GFF446 at 486.966 kb on + strand, within GFF446 at 486.967 kb on - strand, within GFF446 at 486.967 kb on - strand, within GFF446 at 486.967 kb on - strand, within GFF446 at 487.004 kb on + strand, within GFF446 at 487.004 kb on + strand, within GFF446 at 487.004 kb on + strand, within GFF446 at 487.004 kb on + strand, within GFF446 at 487.004 kb on + strand, within GFF446 at 487.005 kb on - strand, within GFF446 at 487.005 kb on - strand, within GFF446 at 487.104 kb on + strand, within GFF446 at 487.104 kb on + strand, within GFF446 at 487.104 kb on + strand, within GFF446 at 487.105 kb on - strand, within GFF446 at 487.106 kb on + strand, within GFF446 at 487.107 kb on - strand, within GFF446 at 487.206 kb on - strand, within GFF446 at 487.248 kb on + strand, within GFF446 at 487.248 kb on + strand, within GFF446 at 487.248 kb on + strand, within GFF446 at 487.249 kb on - strand, within GFF446 at 487.274 kb on + strand, within GFF446 at 487.275 kb on - strand, within GFF446
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 484,961 + -1.5 484,984 + +0.6 484,984 + -0.4 484,984 + +0.4 484,984 + -1.4 484,984 + +0.4 484,984 + -0.8 484,985 - -0.3 484,985 - -0.2 484,985 - -0.3 484,985 - -0.0 485,029 + -0.4 485,029 + -0.6 485,030 - +0.8 485,030 - +0.6 485,046 - -0.1 485,101 - -1.3 485,104 + -0.8 485,115 - -0.0 485,129 + -1.0 485,170 - +1.2 485,170 - -0.8 485,196 + GFF444 0.13 -2.0 485,196 + GFF444 0.13 -0.4 485,196 + GFF444 0.13 -0.2 485,196 + GFF444 0.13 -0.5 485,248 - GFF444 0.21 +1.3 485,297 + GFF444 0.29 -0.4 485,300 + GFF444 0.30 -0.0 485,317 + GFF444 0.33 -0.5 485,335 - GFF444 0.36 -0.1 485,353 - GFF444 0.39 -0.6 485,355 + GFF444 0.39 -0.8 485,355 + GFF444 0.39 -0.3 485,355 + GFF444 0.39 -0.6 485,355 + GFF444 0.39 -0.3 485,355 + GFF444 0.39 -0.0 485,355 + GFF444 0.39 -0.3 485,355 + GFF444 0.39 -0.4 485,355 + GFF444 0.39 -0.8 485,355 + GFF444 0.39 +0.1 485,355 + GFF444 0.39 +0.2 485,358 + GFF444 0.39 -1.3 485,358 + GFF444 0.39 +0.2 485,358 + GFF444 0.39 +0.2 485,358 + GFF444 0.39 -0.0 485,358 + GFF444 0.39 +1.2 485,359 - GFF444 0.40 +0.7 485,359 - GFF444 0.40 -0.2 485,359 - GFF444 0.40 +0.1 485,359 - GFF444 0.40 +0.7 485,375 + GFF444 0.42 -0.2 485,388 - GFF444 0.44 -0.0 485,406 - GFF444 0.47 -0.2 485,427 + GFF444 0.51 -0.3 485,427 + GFF444 0.51 -0.3 485,428 - GFF444 0.51 -0.3 485,446 - GFF444 0.54 -1.5 485,476 - GFF444 0.59 -0.2 485,482 + GFF444 0.60 -0.7 485,482 + GFF444 0.60 +0.6 485,524 + GFF444 0.67 -1.7 485,524 + GFF444 0.67 -0.0 485,524 + GFF444 0.67 -0.0 485,525 - GFF444 0.67 -0.5 485,525 - GFF444 0.67 +1.0 485,541 + GFF444 0.70 +0.9 485,542 - GFF444 0.70 -0.0 485,550 + GFF444 0.71 -2.3 485,551 - GFF444 0.71 +0.3 485,551 - GFF444 0.71 -1.3 485,586 + GFF444 0.77 +1.0 485,586 + GFF444 0.77 -0.4 485,586 + GFF444 0.77 +0.6 485,587 - GFF444 0.77 -0.6 485,587 - GFF444 0.77 +0.6 485,587 - GFF444 0.77 -0.2 485,587 - GFF444 0.77 -1.0 485,590 + GFF444 0.78 -2.6 485,614 - GFF444 0.82 -0.3 485,620 + GFF444 0.83 -0.4 485,620 + GFF444 0.83 -1.0 485,620 + GFF444 0.83 +0.8 485,620 + GFF444 0.83 -0.9 485,620 + GFF444 0.83 -0.4 485,621 - GFF444 0.83 +0.6 485,621 - GFF444 0.83 -0.8 485,621 - GFF444 0.83 +0.3 485,621 - GFF444 0.83 +0.4 485,621 - GFF444 0.83 -0.1 485,621 - GFF444 0.83 -1.5 485,621 - GFF444 0.83 -1.7 485,621 - GFF444 0.83 -0.0 485,624 + GFF444 0.83 -0.6 485,624 + GFF444 0.83 +1.2 485,624 + GFF444 0.83 +0.2 485,625 - GFF444 0.83 -1.0 485,625 - GFF444 0.83 -0.3 485,625 - GFF444 0.83 -1.1 485,625 - GFF444 0.83 -1.3 485,625 - GFF444 0.83 -1.0 485,627 + GFF444 0.84 +0.4 485,627 + GFF444 0.84 +0.6 485,628 - GFF444 0.84 -0.4 485,628 - GFF444 0.84 -1.0 485,648 + GFF444 0.87 +0.5 485,648 + GFF444 0.87 +0.1 485,683 - +0.2 485,688 + +0.7 485,688 + +0.4 485,688 + +0.5 485,689 - +0.1 485,689 - +0.4 485,690 + +0.1 485,690 + -1.3 485,690 + -0.0 485,691 - +0.5 485,691 - -0.3 485,691 - -0.6 485,722 + +0.4 485,723 - +0.2 485,723 - +0.2 485,723 - +0.7 485,726 + -0.6 485,726 + -0.8 485,726 + +0.1 485,726 + -0.4 485,727 - +0.3 485,768 + -0.9 485,769 - -0.1 485,832 + -0.0 485,832 + +0.1 485,832 + -2.8 485,832 + -0.3 485,832 + -0.3 485,833 - -0.5 485,836 + +0.2 485,836 + +1.0 485,837 - -0.3 485,850 + -0.2 485,850 + +0.6 485,850 + -0.2 485,850 + +0.4 485,851 - -1.8 485,864 + +1.0 485,864 + +0.6 485,911 + -1.0 485,911 + +0.8 485,912 - -1.6 485,915 + -1.3 485,915 + +2.0 485,915 + -0.6 485,915 + -0.4 485,919 + -0.4 485,919 + +0.3 485,920 - +0.8 485,920 - -1.0 485,920 - -1.8 485,930 + +0.1 485,938 - -1.0 485,939 + +0.3 485,939 + +1.6 485,939 + -0.9 485,939 + -2.0 485,939 + -1.2 485,939 + +0.6 485,939 + -0.2 485,939 + +0.3 485,939 + -0.7 485,939 + -0.4 485,939 + -0.2 485,939 + -2.0 485,940 - -1.6 485,940 - -1.2 485,940 - +1.0 485,940 - -0.3 485,940 - +0.3 485,940 - -1.6 485,940 - +0.4 485,940 - +1.0 485,940 - +0.1 485,940 - -1.5 485,940 - +0.3 486,011 + GFF445 0.11 +0.6 486,011 + GFF445 0.11 -0.4 486,011 + GFF445 0.11 -0.9 486,012 - GFF445 0.12 -0.8 486,012 - GFF445 0.12 -0.2 486,012 - GFF445 0.12 -1.1 486,012 - GFF445 0.12 -0.9 486,012 - GFF445 0.12 -0.3 486,047 + GFF445 0.19 +1.0 486,047 + GFF445 0.19 -0.5 486,047 + GFF445 0.19 -0.4 486,048 - GFF445 0.19 +0.1 486,054 + GFF445 0.21 -2.2 486,055 - GFF445 0.21 -0.1 486,055 - GFF445 0.21 -0.9 486,068 - GFF445 0.24 +0.5 486,084 + GFF445 0.27 +0.3 486,085 - GFF445 0.27 -0.6 486,085 - GFF445 0.27 +0.1 486,085 - GFF445 0.27 +0.6 486,085 - GFF445 0.27 -1.3 486,104 - GFF445 0.31 -0.3 486,159 - GFF445 0.43 -0.0 486,240 + GFF445 0.61 -1.5 486,248 + GFF445 0.62 -0.8 486,249 - GFF445 0.63 -1.3 486,256 - GFF445 0.64 -0.6 486,256 - GFF445 0.64 -1.0 486,279 + GFF445 0.69 -1.0 486,313 - GFF445 0.76 +0.2 486,313 - GFF445 0.76 -0.5 486,366 - GFF445 0.88 -0.7 486,391 - -0.3 486,391 - +0.3 486,426 + -0.1 486,427 - -1.0 486,475 + +0.7 486,605 + -1.0 486,605 + +0.4 486,606 - -1.8 486,606 - +0.2 486,606 - -1.0 486,606 - -1.0 486,609 + -1.0 486,610 - -0.0 486,689 + +0.7 486,690 - +0.3 486,783 - GFF446 0.12 -0.4 486,966 + GFF446 0.22 -1.1 486,966 + GFF446 0.22 +0.4 486,966 + GFF446 0.22 -0.3 486,966 + GFF446 0.22 +0.6 486,966 + GFF446 0.22 -0.0 486,966 + GFF446 0.22 -0.8 486,966 + GFF446 0.22 -1.0 486,967 - GFF446 0.23 -0.6 486,967 - GFF446 0.23 +0.3 486,967 - GFF446 0.23 -0.6 487,004 + GFF446 0.25 +0.7 487,004 + GFF446 0.25 -1.0 487,004 + GFF446 0.25 -1.0 487,004 + GFF446 0.25 -0.0 487,004 + GFF446 0.25 -0.0 487,005 - GFF446 0.25 -0.8 487,005 - GFF446 0.25 -0.5 487,104 + GFF446 0.31 -1.8 487,104 + GFF446 0.31 -0.8 487,104 + GFF446 0.31 -0.6 487,105 - GFF446 0.31 -0.0 487,106 + GFF446 0.31 -0.0 487,107 - GFF446 0.31 -1.3 487,206 - GFF446 0.37 +0.4 487,248 + GFF446 0.39 -0.4 487,248 + GFF446 0.39 -0.9 487,248 + GFF446 0.39 -0.6 487,249 - GFF446 0.39 -1.3 487,274 + GFF446 0.41 +1.2 487,275 - GFF446 0.41 +0.3
Or see this region's nucleotide sequence