Strain Fitness in Methylophilus sp. DMC18 around GFF434

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF433 and GFF434 are separated by 27 nucleotidesGFF434 and GFF435 are separated by 152 nucleotides GFF433 - Cysteine desulfurase NifS, at 474,298 to 475,443 GFF433 GFF434 - HTH-type transcriptional regulator IscR, at 475,471 to 475,941 GFF434 GFF435 - Serine acetyltransferase, at 476,094 to 476,828 GFF435 Position (kb) 475 476Strain fitness (log2 ratio) -2 -1 0 1at 475.553 kb on - strand, within GFF434at 475.553 kb on - strand, within GFF434at 475.584 kb on - strand, within GFF434at 475.604 kb on - strand, within GFF434at 475.616 kb on - strand, within GFF434at 475.694 kb on - strand, within GFF434at 476.002 kb on - strandat 476.002 kb on - strandat 476.002 kb on - strandat 476.002 kb on - strandat 476.004 kb on + strandat 476.004 kb on + strandat 476.005 kb on - strandat 476.031 kb on - strandat 476.038 kb on + strandat 476.038 kb on + strandat 476.038 kb on + strandat 476.038 kb on + strandat 476.038 kb on + strandat 476.039 kb on - strandat 476.039 kb on - strandat 476.039 kb on - strandat 476.095 kb on + strandat 476.267 kb on - strand, within GFF435at 476.331 kb on - strand, within GFF435

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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475,553 - GFF434 0.17 -1.0
475,553 - GFF434 0.17 -0.0
475,584 - GFF434 0.24 -2.0
475,604 - GFF434 0.28 -0.3
475,616 - GFF434 0.31 -0.8
475,694 - GFF434 0.47 -0.9
476,002 - -0.1
476,002 - -0.8
476,002 - -0.0
476,002 - +0.2
476,004 + -0.5
476,004 + +1.2
476,005 - -0.6
476,031 - -1.0
476,038 + -0.5
476,038 + -0.3
476,038 + -0.6
476,038 + -0.2
476,038 + -0.2
476,039 - -0.5
476,039 - -0.9
476,039 - -0.1
476,095 + -0.6
476,267 - GFF435 0.24 -1.3
476,331 - GFF435 0.32 -0.4

Or see this region's nucleotide sequence