Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF413 and GFF414 are separated by 21 nucleotides GFF414 and GFF415 are separated by 312 nucleotides GFF415 and GFF416 are separated by 189 nucleotides GFF416 and GFF417 overlap by 1 nucleotides
GFF413 - putative FMNH2-dependent monooxygenase SfnC, at 457,048 to 458,277
GFF413
GFF414 - Outer membrane protein W, at 458,299 to 458,931
GFF414
GFF415 - Riboflavin biosynthesis protein RibBA, at 459,244 to 459,849
GFF415
GFF416 - hypothetical protein, at 460,039 to 460,365
GFF416
GFF417 - Transcriptional regulatory protein QseB, at 460,365 to 461,030
GFF417
Position (kb) 459
460 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 458.262 kb on + strand at 458.263 kb on - strand at 458.319 kb on + strand at 458.319 kb on + strand at 458.319 kb on + strand at 458.446 kb on + strand, within GFF414 at 458.447 kb on - strand, within GFF414 at 458.531 kb on + strand, within GFF414 at 458.531 kb on + strand, within GFF414 at 458.531 kb on + strand, within GFF414 at 458.532 kb on - strand, within GFF414 at 458.532 kb on - strand, within GFF414 at 458.532 kb on - strand, within GFF414 at 458.560 kb on + strand, within GFF414 at 458.705 kb on + strand, within GFF414 at 458.705 kb on + strand, within GFF414 at 458.705 kb on + strand, within GFF414 at 458.706 kb on - strand, within GFF414 at 458.718 kb on + strand, within GFF414 at 458.719 kb on - strand, within GFF414 at 458.819 kb on - strand, within GFF414 at 458.819 kb on - strand, within GFF414 at 458.819 kb on - strand, within GFF414 at 458.819 kb on - strand, within GFF414 at 458.862 kb on + strand, within GFF414 at 458.934 kb on + strand at 458.934 kb on + strand at 458.973 kb on + strand at 458.974 kb on - strand at 458.987 kb on + strand at 458.987 kb on + strand at 458.988 kb on - strand at 459.005 kb on + strand at 459.006 kb on - strand at 459.065 kb on + strand at 459.081 kb on - strand at 459.081 kb on - strand at 459.215 kb on + strand at 459.216 kb on - strand at 459.216 kb on - strand at 459.219 kb on + strand at 459.219 kb on + strand at 459.220 kb on - strand at 459.231 kb on - strand at 459.246 kb on - strand at 459.253 kb on + strand at 459.254 kb on - strand at 459.265 kb on + strand at 459.265 kb on + strand at 459.266 kb on - strand at 459.266 kb on - strand at 459.300 kb on - strand at 459.318 kb on + strand, within GFF415 at 459.403 kb on + strand, within GFF415 at 459.404 kb on - strand, within GFF415 at 459.428 kb on + strand, within GFF415 at 459.428 kb on + strand, within GFF415 at 459.429 kb on - strand, within GFF415 at 459.429 kb on - strand, within GFF415 at 459.429 kb on - strand, within GFF415 at 459.455 kb on + strand, within GFF415 at 459.456 kb on - strand, within GFF415 at 459.499 kb on + strand, within GFF415 at 459.500 kb on - strand, within GFF415 at 459.505 kb on - strand, within GFF415 at 459.530 kb on + strand, within GFF415 at 459.531 kb on - strand, within GFF415 at 459.547 kb on - strand, within GFF415 at 459.580 kb on + strand, within GFF415 at 459.585 kb on - strand, within GFF415 at 459.586 kb on + strand, within GFF415 at 459.586 kb on + strand, within GFF415 at 459.586 kb on + strand, within GFF415 at 459.586 kb on + strand, within GFF415 at 459.587 kb on - strand, within GFF415 at 459.587 kb on - strand, within GFF415 at 459.587 kb on - strand, within GFF415 at 459.587 kb on - strand, within GFF415 at 459.777 kb on + strand, within GFF415 at 459.777 kb on + strand, within GFF415 at 459.781 kb on + strand, within GFF415 at 459.781 kb on + strand, within GFF415 at 459.781 kb on + strand, within GFF415 at 459.781 kb on + strand, within GFF415 at 459.782 kb on - strand, within GFF415 at 459.782 kb on - strand, within GFF415 at 459.782 kb on - strand, within GFF415 at 459.811 kb on - strand at 459.814 kb on + strand at 459.839 kb on - strand at 459.886 kb on - strand at 459.886 kb on - strand at 459.891 kb on - strand at 459.909 kb on - strand at 459.970 kb on + strand at 459.970 kb on + strand at 459.971 kb on - strand at 459.982 kb on - strand at 460.010 kb on + strand at 460.010 kb on + strand at 460.011 kb on - strand at 460.011 kb on - strand at 460.011 kb on - strand at 460.034 kb on + strand at 460.034 kb on + strand at 460.070 kb on + strand at 460.070 kb on + strand at 460.071 kb on - strand at 460.071 kb on - strand at 460.071 kb on - strand at 460.098 kb on + strand, within GFF416 at 460.098 kb on + strand, within GFF416 at 460.099 kb on - strand, within GFF416 at 460.104 kb on - strand, within GFF416 at 460.104 kb on - strand, within GFF416 at 460.213 kb on + strand, within GFF416 at 460.214 kb on - strand, within GFF416 at 460.264 kb on + strand, within GFF416 at 460.270 kb on + strand, within GFF416 at 460.270 kb on + strand, within GFF416 at 460.270 kb on + strand, within GFF416 at 460.271 kb on - strand, within GFF416 at 460.271 kb on - strand, within GFF416 at 460.284 kb on - strand, within GFF416 at 460.375 kb on + strand at 460.375 kb on + strand at 460.375 kb on + strand at 460.375 kb on + strand at 460.376 kb on - strand at 460.378 kb on + strand at 460.378 kb on + strand at 460.378 kb on + strand at 460.378 kb on + strand at 460.379 kb on - strand at 460.379 kb on - strand at 460.381 kb on + strand at 460.397 kb on - strand at 460.411 kb on + strand at 460.497 kb on + strand, within GFF417 at 460.498 kb on - strand, within GFF417 at 460.656 kb on + strand, within GFF417 at 460.656 kb on + strand, within GFF417 at 460.656 kb on + strand, within GFF417 at 460.657 kb on - strand, within GFF417 at 460.657 kb on - strand, within GFF417 at 460.657 kb on - strand, within GFF417 at 460.657 kb on - strand, within GFF417 at 460.688 kb on - strand, within GFF417 at 460.688 kb on - strand, within GFF417 at 460.712 kb on + strand, within GFF417 at 460.713 kb on - strand, within GFF417 at 460.837 kb on + strand, within GFF417 at 460.838 kb on - strand, within GFF417 at 460.843 kb on - strand, within GFF417
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 458,262 + -0.3 458,263 - -0.6 458,319 + -0.3 458,319 + -2.7 458,319 + -0.5 458,446 + GFF414 0.23 -0.8 458,447 - GFF414 0.23 +1.2 458,531 + GFF414 0.37 +0.8 458,531 + GFF414 0.37 -0.9 458,531 + GFF414 0.37 -0.1 458,532 - GFF414 0.37 +0.7 458,532 - GFF414 0.37 +0.5 458,532 - GFF414 0.37 -0.7 458,560 + GFF414 0.41 -0.8 458,705 + GFF414 0.64 -0.0 458,705 + GFF414 0.64 -0.1 458,705 + GFF414 0.64 +0.4 458,706 - GFF414 0.64 -0.1 458,718 + GFF414 0.66 -1.3 458,719 - GFF414 0.66 -0.8 458,819 - GFF414 0.82 -0.6 458,819 - GFF414 0.82 -1.0 458,819 - GFF414 0.82 -0.8 458,819 - GFF414 0.82 +0.4 458,862 + GFF414 0.89 -1.3 458,934 + -1.3 458,934 + +0.7 458,973 + -0.6 458,974 - -2.6 458,987 + -1.3 458,987 + -0.3 458,988 - -0.0 459,005 + -1.1 459,006 - -1.1 459,065 + +0.1 459,081 - -0.6 459,081 - -0.3 459,215 + -1.0 459,216 - +0.2 459,216 - -0.2 459,219 + +1.0 459,219 + +0.6 459,220 - -0.6 459,231 - -0.4 459,246 - -0.0 459,253 + +0.1 459,254 - -1.3 459,265 + +0.2 459,265 + -0.0 459,266 - -0.0 459,266 - -0.0 459,300 - -0.6 459,318 + GFF415 0.12 -1.0 459,403 + GFF415 0.26 -1.6 459,404 - GFF415 0.26 -0.9 459,428 + GFF415 0.30 -1.0 459,428 + GFF415 0.30 -0.6 459,429 - GFF415 0.31 +1.2 459,429 - GFF415 0.31 -0.3 459,429 - GFF415 0.31 -0.4 459,455 + GFF415 0.35 -1.0 459,456 - GFF415 0.35 +0.7 459,499 + GFF415 0.42 -0.4 459,500 - GFF415 0.42 +1.0 459,505 - GFF415 0.43 +0.2 459,530 + GFF415 0.47 -1.6 459,531 - GFF415 0.47 -1.8 459,547 - GFF415 0.50 +0.2 459,580 + GFF415 0.55 +0.7 459,585 - GFF415 0.56 +0.6 459,586 + GFF415 0.56 +0.2 459,586 + GFF415 0.56 -0.6 459,586 + GFF415 0.56 -0.1 459,586 + GFF415 0.56 -0.3 459,587 - GFF415 0.57 +0.2 459,587 - GFF415 0.57 +1.0 459,587 - GFF415 0.57 +0.2 459,587 - GFF415 0.57 -0.0 459,777 + GFF415 0.88 -0.7 459,777 + GFF415 0.88 -0.8 459,781 + GFF415 0.89 -0.3 459,781 + GFF415 0.89 -1.3 459,781 + GFF415 0.89 -1.0 459,781 + GFF415 0.89 -0.6 459,782 - GFF415 0.89 -0.4 459,782 - GFF415 0.89 -0.1 459,782 - GFF415 0.89 -0.8 459,811 - -1.3 459,814 + +0.1 459,839 - -0.6 459,886 - -0.3 459,886 - +0.8 459,891 - -0.4 459,909 - +0.1 459,970 + -0.6 459,970 + -0.6 459,971 - -0.4 459,982 - -0.7 460,010 + -0.7 460,010 + -0.4 460,011 - +0.6 460,011 - +0.2 460,011 - +0.6 460,034 + -0.8 460,034 + -0.0 460,070 + -1.0 460,070 + -0.0 460,071 - -0.4 460,071 - -1.2 460,071 - -0.0 460,098 + GFF416 0.18 +0.8 460,098 + GFF416 0.18 -1.0 460,099 - GFF416 0.18 -0.5 460,104 - GFF416 0.20 -0.8 460,104 - GFF416 0.20 +0.4 460,213 + GFF416 0.53 +0.2 460,214 - GFF416 0.54 -1.2 460,264 + GFF416 0.69 +0.2 460,270 + GFF416 0.71 -2.8 460,270 + GFF416 0.71 -0.0 460,270 + GFF416 0.71 -1.4 460,271 - GFF416 0.71 -1.8 460,271 - GFF416 0.71 -0.6 460,284 - GFF416 0.75 -0.6 460,375 + -0.0 460,375 + -0.4 460,375 + -0.0 460,375 + -0.4 460,376 - -0.8 460,378 + -1.0 460,378 + -0.8 460,378 + -0.5 460,378 + +0.7 460,379 - -0.3 460,379 - -0.6 460,381 + -1.4 460,397 - +0.1 460,411 + -1.4 460,497 + GFF417 0.20 -1.0 460,498 - GFF417 0.20 -0.0 460,656 + GFF417 0.44 -1.0 460,656 + GFF417 0.44 +0.5 460,656 + GFF417 0.44 +0.2 460,657 - GFF417 0.44 -0.9 460,657 - GFF417 0.44 -1.5 460,657 - GFF417 0.44 -1.5 460,657 - GFF417 0.44 -0.9 460,688 - GFF417 0.48 -0.0 460,688 - GFF417 0.48 -0.5 460,712 + GFF417 0.52 +0.2 460,713 - GFF417 0.52 -0.8 460,837 + GFF417 0.71 +0.2 460,838 - GFF417 0.71 -0.0 460,843 - GFF417 0.72 -0.0
Or see this region's nucleotide sequence