Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF356 and GFF357 overlap by 1 nucleotides GFF357 and GFF358 are separated by 163 nucleotides GFF358 and GFF359 are separated by 164 nucleotides
GFF356 - Transcription-repair-coupling factor, at 385,249 to 388,656
GFF356
GFF357 - hypothetical protein, at 388,656 to 389,273
GFF357
GFF358 - hypothetical protein, at 389,437 to 389,679
GFF358
GFF359 - Putative NAD(P)H nitroreductase, at 389,844 to 390,503
GFF359
Position (kb) 388
389
390 Strain fitness (log2 ratio) -2
-1
0
1
2 at 387.664 kb on + strand, within GFF356 at 387.664 kb on + strand, within GFF356 at 387.665 kb on - strand, within GFF356 at 387.676 kb on - strand, within GFF356 at 387.694 kb on + strand, within GFF356 at 387.694 kb on + strand, within GFF356 at 387.694 kb on + strand, within GFF356 at 387.694 kb on + strand, within GFF356 at 387.694 kb on + strand, within GFF356 at 387.694 kb on + strand, within GFF356 at 387.694 kb on + strand, within GFF356 at 387.694 kb on + strand, within GFF356 at 387.694 kb on + strand, within GFF356 at 387.695 kb on - strand, within GFF356 at 387.762 kb on - strand, within GFF356 at 387.828 kb on + strand, within GFF356 at 387.828 kb on + strand, within GFF356 at 387.828 kb on + strand, within GFF356 at 387.828 kb on + strand, within GFF356 at 387.831 kb on + strand, within GFF356 at 387.831 kb on + strand, within GFF356 at 387.831 kb on + strand, within GFF356 at 387.831 kb on + strand, within GFF356 at 387.831 kb on + strand, within GFF356 at 387.831 kb on + strand, within GFF356 at 387.831 kb on + strand, within GFF356 at 387.832 kb on - strand, within GFF356 at 387.832 kb on - strand, within GFF356 at 387.832 kb on - strand, within GFF356 at 387.832 kb on - strand, within GFF356 at 387.958 kb on + strand, within GFF356 at 387.958 kb on + strand, within GFF356 at 387.959 kb on - strand, within GFF356 at 387.959 kb on - strand, within GFF356 at 387.959 kb on - strand, within GFF356 at 387.964 kb on + strand, within GFF356 at 387.964 kb on + strand, within GFF356 at 387.965 kb on - strand, within GFF356 at 387.987 kb on + strand, within GFF356 at 387.987 kb on + strand, within GFF356 at 387.987 kb on + strand, within GFF356 at 387.987 kb on + strand, within GFF356 at 387.988 kb on - strand, within GFF356 at 387.990 kb on + strand, within GFF356 at 387.991 kb on - strand, within GFF356 at 388.143 kb on + strand, within GFF356 at 388.144 kb on - strand, within GFF356 at 388.273 kb on + strand, within GFF356 at 388.274 kb on - strand, within GFF356 at 388.274 kb on - strand, within GFF356 at 388.306 kb on + strand, within GFF356 at 388.308 kb on + strand, within GFF356 at 388.308 kb on + strand, within GFF356 at 388.452 kb on + strand at 388.494 kb on + strand at 388.581 kb on - strand at 388.619 kb on + strand at 388.619 kb on + strand at 388.620 kb on - strand at 388.625 kb on + strand at 388.625 kb on + strand at 388.650 kb on + strand at 388.651 kb on - strand at 388.654 kb on + strand at 388.655 kb on - strand at 388.655 kb on - strand at 388.655 kb on - strand at 388.694 kb on + strand at 388.719 kb on + strand, within GFF357 at 388.760 kb on + strand, within GFF357 at 388.864 kb on + strand, within GFF357 at 388.884 kb on + strand, within GFF357 at 388.884 kb on + strand, within GFF357 at 388.884 kb on + strand, within GFF357 at 388.887 kb on + strand, within GFF357 at 388.888 kb on - strand, within GFF357 at 388.899 kb on + strand, within GFF357 at 388.899 kb on + strand, within GFF357 at 388.935 kb on + strand, within GFF357 at 388.935 kb on + strand, within GFF357 at 388.935 kb on + strand, within GFF357 at 388.935 kb on + strand, within GFF357 at 388.935 kb on + strand, within GFF357 at 389.010 kb on - strand, within GFF357 at 389.094 kb on + strand, within GFF357 at 389.136 kb on + strand, within GFF357 at 389.137 kb on - strand, within GFF357 at 389.181 kb on + strand, within GFF357 at 389.238 kb on + strand at 389.239 kb on - strand at 389.239 kb on - strand at 389.239 kb on - strand at 389.292 kb on + strand at 389.293 kb on - strand at 389.296 kb on + strand at 389.296 kb on + strand at 389.296 kb on + strand at 389.296 kb on + strand at 389.297 kb on - strand at 389.297 kb on - strand at 389.363 kb on + strand at 389.364 kb on - strand at 389.364 kb on - strand at 389.364 kb on - strand at 389.364 kb on - strand at 389.373 kb on - strand at 389.373 kb on - strand at 389.390 kb on + strand at 389.390 kb on + strand at 389.390 kb on + strand at 389.391 kb on - strand at 389.391 kb on - strand at 389.391 kb on - strand at 389.394 kb on + strand at 389.395 kb on - strand at 389.402 kb on - strand at 389.487 kb on + strand, within GFF358 at 389.487 kb on + strand, within GFF358 at 389.488 kb on - strand, within GFF358 at 389.488 kb on - strand, within GFF358 at 389.512 kb on - strand, within GFF358 at 389.522 kb on - strand, within GFF358 at 389.522 kb on - strand, within GFF358 at 389.552 kb on + strand, within GFF358 at 389.552 kb on + strand, within GFF358 at 389.553 kb on - strand, within GFF358 at 389.553 kb on - strand, within GFF358 at 389.553 kb on - strand, within GFF358 at 389.553 kb on - strand, within GFF358 at 389.556 kb on + strand, within GFF358 at 389.556 kb on + strand, within GFF358 at 389.556 kb on + strand, within GFF358 at 389.556 kb on + strand, within GFF358 at 389.556 kb on + strand, within GFF358 at 389.556 kb on + strand, within GFF358 at 389.556 kb on + strand, within GFF358 at 389.556 kb on + strand, within GFF358 at 389.556 kb on + strand, within GFF358 at 389.556 kb on + strand, within GFF358 at 389.556 kb on + strand, within GFF358 at 389.556 kb on + strand, within GFF358 at 389.557 kb on - strand, within GFF358 at 389.557 kb on - strand, within GFF358 at 389.557 kb on - strand, within GFF358 at 389.557 kb on - strand, within GFF358 at 389.557 kb on - strand, within GFF358 at 389.557 kb on - strand, within GFF358 at 389.557 kb on - strand, within GFF358 at 389.658 kb on + strand at 389.659 kb on - strand at 389.659 kb on - strand at 389.693 kb on - strand at 389.693 kb on - strand at 389.693 kb on - strand at 389.693 kb on - strand at 389.696 kb on + strand at 389.697 kb on - strand at 389.714 kb on + strand at 389.714 kb on + strand at 389.715 kb on - strand at 389.715 kb on - strand at 389.715 kb on - strand at 389.736 kb on + strand at 389.736 kb on + strand at 389.736 kb on + strand at 389.736 kb on + strand at 389.736 kb on + strand at 389.737 kb on - strand at 389.737 kb on - strand at 389.737 kb on - strand at 389.740 kb on + strand at 389.794 kb on + strand at 389.794 kb on + strand at 389.794 kb on + strand at 389.795 kb on - strand at 389.795 kb on - strand at 389.795 kb on - strand at 389.795 kb on - strand at 389.795 kb on - strand at 389.795 kb on - strand at 389.806 kb on + strand at 389.806 kb on + strand at 389.806 kb on + strand at 389.807 kb on - strand at 389.807 kb on - strand at 389.835 kb on + strand at 389.836 kb on - strand at 389.839 kb on + strand at 389.840 kb on - strand at 389.840 kb on - strand at 389.840 kb on - strand at 389.840 kb on - strand at 389.840 kb on - strand at 389.840 kb on - strand at 389.859 kb on + strand at 389.859 kb on + strand at 389.859 kb on + strand at 389.859 kb on + strand at 389.859 kb on + strand at 389.860 kb on - strand at 389.860 kb on - strand at 389.924 kb on + strand, within GFF359 at 389.925 kb on - strand, within GFF359 at 389.926 kb on + strand, within GFF359 at 389.926 kb on + strand, within GFF359 at 389.926 kb on + strand, within GFF359 at 389.926 kb on + strand, within GFF359 at 389.927 kb on - strand, within GFF359 at 389.927 kb on - strand, within GFF359 at 389.927 kb on - strand, within GFF359 at 389.927 kb on - strand, within GFF359 at 389.927 kb on - strand, within GFF359 at 389.927 kb on - strand, within GFF359 at 389.996 kb on + strand, within GFF359 at 389.996 kb on + strand, within GFF359 at 389.996 kb on + strand, within GFF359 at 389.997 kb on - strand, within GFF359 at 390.067 kb on + strand, within GFF359 at 390.067 kb on + strand, within GFF359 at 390.068 kb on - strand, within GFF359 at 390.068 kb on - strand, within GFF359 at 390.143 kb on - strand, within GFF359 at 390.143 kb on - strand, within GFF359 at 390.143 kb on - strand, within GFF359 at 390.212 kb on - strand, within GFF359
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 387,664 + GFF356 0.71 +0.2 387,664 + GFF356 0.71 -2.0 387,665 - GFF356 0.71 -1.3 387,676 - GFF356 0.71 +1.0 387,694 + GFF356 0.72 -1.0 387,694 + GFF356 0.72 -1.3 387,694 + GFF356 0.72 +1.3 387,694 + GFF356 0.72 -0.9 387,694 + GFF356 0.72 -0.7 387,694 + GFF356 0.72 -1.1 387,694 + GFF356 0.72 -1.8 387,694 + GFF356 0.72 -0.9 387,694 + GFF356 0.72 -1.5 387,695 - GFF356 0.72 -1.3 387,762 - GFF356 0.74 -1.6 387,828 + GFF356 0.76 -1.3 387,828 + GFF356 0.76 -0.6 387,828 + GFF356 0.76 -0.8 387,828 + GFF356 0.76 -1.8 387,831 + GFF356 0.76 +0.7 387,831 + GFF356 0.76 -1.3 387,831 + GFF356 0.76 -1.0 387,831 + GFF356 0.76 -0.0 387,831 + GFF356 0.76 -1.3 387,831 + GFF356 0.76 -0.3 387,831 + GFF356 0.76 -1.0 387,832 - GFF356 0.76 -1.0 387,832 - GFF356 0.76 -1.2 387,832 - GFF356 0.76 +0.6 387,832 - GFF356 0.76 -1.0 387,958 + GFF356 0.79 -0.5 387,958 + GFF356 0.79 -1.0 387,959 - GFF356 0.80 -0.6 387,959 - GFF356 0.80 -0.7 387,959 - GFF356 0.80 -0.8 387,964 + GFF356 0.80 -1.3 387,964 + GFF356 0.80 -0.4 387,965 - GFF356 0.80 -0.7 387,987 + GFF356 0.80 -1.5 387,987 + GFF356 0.80 -0.0 387,987 + GFF356 0.80 -1.8 387,987 + GFF356 0.80 -1.3 387,988 - GFF356 0.80 -0.0 387,990 + GFF356 0.80 -1.6 387,991 - GFF356 0.80 -0.2 388,143 + GFF356 0.85 -0.7 388,144 - GFF356 0.85 -0.6 388,273 + GFF356 0.89 -0.2 388,274 - GFF356 0.89 -1.0 388,274 - GFF356 0.89 -0.0 388,306 + GFF356 0.90 -1.3 388,308 + GFF356 0.90 -1.3 388,308 + GFF356 0.90 +0.2 388,452 + -0.6 388,494 + -0.0 388,581 - -1.8 388,619 + -0.6 388,619 + -1.3 388,620 - +1.0 388,625 + -1.2 388,625 + -0.8 388,650 + -1.6 388,651 - -2.2 388,654 + -0.8 388,655 - -0.6 388,655 - -0.0 388,655 - -0.8 388,694 + -0.6 388,719 + GFF357 0.10 -1.0 388,760 + GFF357 0.17 -1.0 388,864 + GFF357 0.34 -0.0 388,884 + GFF357 0.37 -1.3 388,884 + GFF357 0.37 -1.3 388,884 + GFF357 0.37 +0.6 388,887 + GFF357 0.37 -0.3 388,888 - GFF357 0.38 -0.0 388,899 + GFF357 0.39 +0.3 388,899 + GFF357 0.39 +0.3 388,935 + GFF357 0.45 -1.6 388,935 + GFF357 0.45 -0.0 388,935 + GFF357 0.45 -1.7 388,935 + GFF357 0.45 -1.3 388,935 + GFF357 0.45 -0.2 389,010 - GFF357 0.57 -1.0 389,094 + GFF357 0.71 -0.2 389,136 + GFF357 0.78 -1.3 389,137 - GFF357 0.78 -1.0 389,181 + GFF357 0.85 -1.8 389,238 + -1.8 389,239 - -1.0 389,239 - -1.0 389,239 - -0.0 389,292 + -0.8 389,293 - +0.1 389,296 + -0.3 389,296 + -1.0 389,296 + +0.7 389,296 + +0.2 389,297 - -0.4 389,297 - -1.4 389,363 + -0.6 389,364 - +0.1 389,364 - -0.2 389,364 - +0.4 389,364 - -0.8 389,373 - -1.1 389,373 - +0.2 389,390 + -1.0 389,390 + +0.1 389,390 + -0.4 389,391 - -0.7 389,391 - +0.8 389,391 - -1.0 389,394 + -1.5 389,395 - +0.5 389,402 - -0.1 389,487 + GFF358 0.21 +0.1 389,487 + GFF358 0.21 -1.6 389,488 - GFF358 0.21 +0.6 389,488 - GFF358 0.21 -1.8 389,512 - GFF358 0.31 -0.8 389,522 - GFF358 0.35 -0.7 389,522 - GFF358 0.35 -0.8 389,552 + GFF358 0.47 +0.1 389,552 + GFF358 0.47 -1.2 389,553 - GFF358 0.48 -0.1 389,553 - GFF358 0.48 -1.0 389,553 - GFF358 0.48 +0.3 389,553 - GFF358 0.48 +0.2 389,556 + GFF358 0.49 -1.0 389,556 + GFF358 0.49 -0.1 389,556 + GFF358 0.49 -0.3 389,556 + GFF358 0.49 +1.0 389,556 + GFF358 0.49 -0.1 389,556 + GFF358 0.49 -0.8 389,556 + GFF358 0.49 -0.7 389,556 + GFF358 0.49 -0.2 389,556 + GFF358 0.49 -0.0 389,556 + GFF358 0.49 -0.0 389,556 + GFF358 0.49 -1.2 389,556 + GFF358 0.49 +0.2 389,557 - GFF358 0.49 -2.2 389,557 - GFF358 0.49 +0.9 389,557 - GFF358 0.49 -0.9 389,557 - GFF358 0.49 -0.0 389,557 - GFF358 0.49 -1.0 389,557 - GFF358 0.49 -1.7 389,557 - GFF358 0.49 -1.2 389,658 + -0.0 389,659 - -0.4 389,659 - -0.3 389,693 - -0.2 389,693 - +0.4 389,693 - -1.3 389,693 - +0.1 389,696 + -0.1 389,697 - -1.2 389,714 + +0.2 389,714 + -0.0 389,715 - -0.6 389,715 - -0.6 389,715 - -1.1 389,736 + -0.4 389,736 + -0.6 389,736 + -0.4 389,736 + +0.6 389,736 + +0.5 389,737 - -0.5 389,737 - -0.8 389,737 - -0.0 389,740 + -0.4 389,794 + +0.2 389,794 + -0.3 389,794 + +1.8 389,795 - -0.1 389,795 - -0.4 389,795 - -1.6 389,795 - -0.1 389,795 - -0.2 389,795 - -0.3 389,806 + +0.2 389,806 + +0.2 389,806 + +0.2 389,807 - -1.0 389,807 - -1.7 389,835 + -0.3 389,836 - -2.5 389,839 + +1.6 389,840 - -0.0 389,840 - -0.3 389,840 - +0.4 389,840 - -1.0 389,840 - -0.8 389,840 - -0.7 389,859 + -0.0 389,859 + -0.3 389,859 + -0.9 389,859 + -0.2 389,859 + -0.2 389,860 - -1.0 389,860 - -0.8 389,924 + GFF359 0.12 -1.6 389,925 - GFF359 0.12 -0.1 389,926 + GFF359 0.12 -0.8 389,926 + GFF359 0.12 +0.0 389,926 + GFF359 0.12 -0.0 389,926 + GFF359 0.12 -1.0 389,927 - GFF359 0.13 +0.3 389,927 - GFF359 0.13 -0.0 389,927 - GFF359 0.13 -1.1 389,927 - GFF359 0.13 -0.0 389,927 - GFF359 0.13 +0.6 389,927 - GFF359 0.13 +0.6 389,996 + GFF359 0.23 -0.3 389,996 + GFF359 0.23 +0.6 389,996 + GFF359 0.23 -0.3 389,997 - GFF359 0.23 -1.2 390,067 + GFF359 0.34 -0.4 390,067 + GFF359 0.34 +0.3 390,068 - GFF359 0.34 -0.0 390,068 - GFF359 0.34 -1.6 390,143 - GFF359 0.45 -0.6 390,143 - GFF359 0.45 -1.8 390,143 - GFF359 0.45 -0.0 390,212 - GFF359 0.56 -0.3
Or see this region's nucleotide sequence