Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF352 and GFF353 are separated by 250 nucleotides GFF353 and GFF354 are separated by 13 nucleotides GFF354 and GFF355 are separated by 32 nucleotides GFF355 and GFF356 are separated by 127 nucleotides
GFF352 - Serine--tRNA ligase, at 381,116 to 382,387
GFF352
GFF353 - hypothetical protein, at 382,638 to 382,913
GFF353
GFF354 - Membrane-bound lytic murein transglycosylase F, at 382,927 to 384,387
GFF354
GFF355 - Ribose-5-phosphate isomerase A, at 384,420 to 385,121
GFF355
GFF356 - Transcription-repair-coupling factor, at 385,249 to 388,656
GFF356
Position (kb) 382
383
384
385 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 382.381 kb on + strand at 382.381 kb on + strand at 382.381 kb on + strand at 382.381 kb on + strand at 382.381 kb on + strand at 382.382 kb on - strand at 382.382 kb on - strand at 382.382 kb on - strand at 382.382 kb on - strand at 382.385 kb on + strand at 382.385 kb on + strand at 382.386 kb on - strand at 382.386 kb on - strand at 382.408 kb on - strand at 382.424 kb on + strand at 382.445 kb on + strand at 382.446 kb on - strand at 382.446 kb on - strand at 382.449 kb on + strand at 382.449 kb on + strand at 382.449 kb on + strand at 382.449 kb on + strand at 382.449 kb on + strand at 382.449 kb on + strand at 382.450 kb on - strand at 382.450 kb on - strand at 382.450 kb on - strand at 382.450 kb on - strand at 382.450 kb on - strand at 382.450 kb on - strand at 382.450 kb on - strand at 382.450 kb on - strand at 382.450 kb on - strand at 382.450 kb on - strand at 382.450 kb on - strand at 382.452 kb on + strand at 382.452 kb on + strand at 382.452 kb on + strand at 382.453 kb on - strand at 382.500 kb on - strand at 382.500 kb on - strand at 382.503 kb on + strand at 382.503 kb on + strand at 382.503 kb on + strand at 382.503 kb on + strand at 382.504 kb on - strand at 382.504 kb on - strand at 382.504 kb on - strand at 382.504 kb on - strand at 382.549 kb on - strand at 382.563 kb on + strand at 382.563 kb on + strand at 382.563 kb on + strand at 382.563 kb on + strand at 382.563 kb on + strand at 382.563 kb on + strand at 382.563 kb on + strand at 382.563 kb on + strand at 382.563 kb on + strand at 382.563 kb on + strand at 382.563 kb on + strand at 382.563 kb on + strand at 382.563 kb on + strand at 382.564 kb on - strand at 382.564 kb on - strand at 382.564 kb on - strand at 382.564 kb on - strand at 382.564 kb on - strand at 382.564 kb on - strand at 382.564 kb on - strand at 382.564 kb on - strand at 382.564 kb on - strand at 382.564 kb on - strand at 382.564 kb on - strand at 382.564 kb on - strand at 382.564 kb on - strand at 382.564 kb on - strand at 382.564 kb on - strand at 382.564 kb on - strand at 382.564 kb on - strand at 382.564 kb on - strand at 382.564 kb on - strand at 382.564 kb on - strand at 382.564 kb on - strand at 382.564 kb on - strand at 382.567 kb on + strand at 382.567 kb on + strand at 382.567 kb on + strand at 382.567 kb on + strand at 382.567 kb on + strand at 382.567 kb on + strand at 382.567 kb on + strand at 382.567 kb on + strand at 382.567 kb on + strand at 382.567 kb on + strand at 382.567 kb on + strand at 382.567 kb on + strand at 382.567 kb on + strand at 382.567 kb on + strand at 382.567 kb on + strand at 382.567 kb on + strand at 382.567 kb on + strand at 382.567 kb on + strand at 382.567 kb on + strand at 382.567 kb on + strand at 382.568 kb on - strand at 382.568 kb on - strand at 382.568 kb on - strand at 382.568 kb on - strand at 382.568 kb on - strand at 382.568 kb on - strand at 382.568 kb on - strand at 382.568 kb on - strand at 382.568 kb on - strand at 382.568 kb on - strand at 382.568 kb on - strand at 382.568 kb on - strand at 382.568 kb on - strand at 382.568 kb on - strand at 382.568 kb on - strand at 382.569 kb on + strand at 382.569 kb on + strand at 382.569 kb on + strand at 382.569 kb on + strand at 382.569 kb on + strand at 382.569 kb on + strand at 382.569 kb on + strand at 382.570 kb on - strand at 382.570 kb on - strand at 382.570 kb on - strand at 382.597 kb on + strand at 382.598 kb on - strand at 382.598 kb on - strand at 382.620 kb on + strand at 382.621 kb on - strand at 382.666 kb on + strand, within GFF353 at 382.666 kb on + strand, within GFF353 at 382.700 kb on + strand, within GFF353 at 382.701 kb on - strand, within GFF353 at 382.737 kb on - strand, within GFF353 at 382.769 kb on - strand, within GFF353 at 382.769 kb on - strand, within GFF353 at 382.798 kb on + strand, within GFF353 at 382.798 kb on + strand, within GFF353 at 382.799 kb on - strand, within GFF353 at 382.866 kb on + strand, within GFF353 at 382.866 kb on + strand, within GFF353 at 382.866 kb on + strand, within GFF353 at 382.867 kb on - strand, within GFF353 at 382.867 kb on - strand, within GFF353 at 382.867 kb on - strand, within GFF353 at 382.867 kb on - strand, within GFF353 at 382.867 kb on - strand, within GFF353 at 382.869 kb on - strand, within GFF353 at 382.912 kb on - strand at 382.928 kb on + strand at 382.943 kb on - strand at 382.961 kb on - strand at 382.961 kb on - strand at 382.997 kb on + strand at 383.030 kb on + strand at 383.031 kb on - strand at 383.031 kb on - strand at 383.031 kb on - strand at 383.052 kb on - strand at 383.052 kb on - strand at 383.078 kb on + strand, within GFF354 at 383.099 kb on + strand, within GFF354 at 383.185 kb on - strand, within GFF354 at 383.219 kb on + strand, within GFF354 at 383.236 kb on - strand, within GFF354 at 383.411 kb on + strand, within GFF354 at 383.411 kb on + strand, within GFF354 at 383.411 kb on + strand, within GFF354 at 383.412 kb on - strand, within GFF354 at 383.412 kb on - strand, within GFF354 at 383.412 kb on - strand, within GFF354 at 383.412 kb on - strand, within GFF354 at 383.435 kb on + strand, within GFF354 at 383.435 kb on + strand, within GFF354 at 383.435 kb on + strand, within GFF354 at 383.504 kb on + strand, within GFF354 at 383.504 kb on + strand, within GFF354 at 383.505 kb on - strand, within GFF354 at 383.582 kb on + strand, within GFF354 at 383.603 kb on - strand, within GFF354 at 383.642 kb on - strand, within GFF354 at 383.642 kb on - strand, within GFF354 at 383.739 kb on + strand, within GFF354 at 383.739 kb on + strand, within GFF354 at 383.739 kb on + strand, within GFF354 at 383.740 kb on - strand, within GFF354 at 383.740 kb on - strand, within GFF354 at 383.740 kb on - strand, within GFF354 at 383.740 kb on - strand, within GFF354 at 383.740 kb on - strand, within GFF354 at 383.740 kb on - strand, within GFF354 at 383.740 kb on - strand, within GFF354 at 383.740 kb on - strand, within GFF354 at 383.740 kb on - strand, within GFF354 at 383.740 kb on - strand, within GFF354 at 383.740 kb on - strand, within GFF354 at 383.741 kb on + strand, within GFF354 at 383.742 kb on - strand, within GFF354 at 383.742 kb on - strand, within GFF354 at 383.861 kb on + strand, within GFF354 at 384.115 kb on + strand, within GFF354 at 384.116 kb on - strand, within GFF354 at 384.179 kb on + strand, within GFF354 at 384.180 kb on - strand, within GFF354 at 384.194 kb on + strand, within GFF354 at 384.194 kb on + strand, within GFF354 at 384.194 kb on + strand, within GFF354 at 384.195 kb on - strand, within GFF354 at 384.214 kb on - strand, within GFF354 at 384.218 kb on + strand, within GFF354 at 384.219 kb on - strand, within GFF354 at 384.219 kb on - strand, within GFF354 at 384.257 kb on + strand at 384.257 kb on + strand at 384.257 kb on + strand at 384.257 kb on + strand at 384.258 kb on - strand at 384.303 kb on + strand at 384.303 kb on + strand at 384.304 kb on - strand at 384.304 kb on - strand at 384.304 kb on - strand at 384.312 kb on + strand at 384.472 kb on - strand at 384.485 kb on + strand at 384.486 kb on - strand at 384.706 kb on + strand, within GFF355 at 384.706 kb on + strand, within GFF355 at 384.706 kb on + strand, within GFF355 at 384.706 kb on + strand, within GFF355 at 384.707 kb on - strand, within GFF355 at 384.707 kb on - strand, within GFF355 at 384.707 kb on - strand, within GFF355 at 384.707 kb on - strand, within GFF355 at 384.707 kb on - strand, within GFF355 at 384.707 kb on - strand, within GFF355 at 384.707 kb on - strand, within GFF355 at 384.720 kb on - strand, within GFF355 at 384.720 kb on - strand, within GFF355 at 384.741 kb on - strand, within GFF355 at 384.741 kb on - strand, within GFF355 at 384.756 kb on - strand, within GFF355 at 384.803 kb on - strand, within GFF355 at 384.803 kb on - strand, within GFF355 at 384.860 kb on - strand, within GFF355 at 384.860 kb on - strand, within GFF355 at 384.860 kb on - strand, within GFF355 at 385.001 kb on - strand, within GFF355 at 385.011 kb on - strand, within GFF355 at 385.011 kb on - strand, within GFF355 at 385.096 kb on - strand at 385.096 kb on - strand at 385.118 kb on - strand at 385.118 kb on - strand at 385.124 kb on + strand at 385.125 kb on - strand at 385.125 kb on - strand at 385.141 kb on + strand at 385.141 kb on + strand at 385.142 kb on - strand at 385.179 kb on + strand at 385.179 kb on + strand at 385.180 kb on - strand at 385.180 kb on - strand at 385.180 kb on - strand at 385.181 kb on + strand at 385.182 kb on - strand at 385.182 kb on - strand at 385.212 kb on + strand at 385.212 kb on + strand at 385.212 kb on + strand at 385.212 kb on + strand at 385.212 kb on + strand at 385.213 kb on - strand at 385.213 kb on - strand at 385.213 kb on - strand at 385.220 kb on + strand at 385.232 kb on + strand at 385.232 kb on + strand at 385.232 kb on + strand at 385.232 kb on + strand at 385.233 kb on - strand at 385.248 kb on + strand at 385.346 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 382,381 + -0.2 382,381 + -0.3 382,381 + +0.1 382,381 + -0.3 382,381 + -0.1 382,382 - +0.1 382,382 - -0.0 382,382 - -0.6 382,382 - -0.7 382,385 + -0.8 382,385 + -0.4 382,386 - -1.0 382,386 - -1.0 382,408 - -1.1 382,424 + -0.6 382,445 + +0.7 382,446 - -0.6 382,446 - -0.5 382,449 + -1.3 382,449 + +0.3 382,449 + -0.5 382,449 + -0.6 382,449 + -0.1 382,449 + -0.4 382,450 - -0.3 382,450 - -0.8 382,450 - +0.1 382,450 - -0.8 382,450 - +0.2 382,450 - -0.1 382,450 - -0.3 382,450 - +0.6 382,450 - -1.7 382,450 - -1.0 382,450 - -1.6 382,452 + -0.2 382,452 + +1.2 382,452 + -1.2 382,453 - -1.0 382,500 - -0.8 382,500 - +1.6 382,503 + -0.0 382,503 + -1.8 382,503 + +0.3 382,503 + -1.8 382,504 - -0.6 382,504 - -0.8 382,504 - -0.1 382,504 - -1.3 382,549 - +0.4 382,563 + -0.7 382,563 + +0.3 382,563 + -2.0 382,563 + -1.3 382,563 + +1.0 382,563 + -1.8 382,563 + -0.6 382,563 + +0.4 382,563 + -0.0 382,563 + -0.2 382,563 + +0.0 382,563 + -0.4 382,563 + +1.8 382,564 - -0.6 382,564 - -0.8 382,564 - -0.4 382,564 - -1.0 382,564 - -1.3 382,564 - -0.8 382,564 - -0.4 382,564 - -1.1 382,564 - -0.6 382,564 - -0.3 382,564 - -1.3 382,564 - -0.9 382,564 - -0.0 382,564 - -0.5 382,564 - -0.3 382,564 - -1.3 382,564 - +0.3 382,564 - -0.8 382,564 - -1.6 382,564 - +0.5 382,564 - -1.0 382,564 - -1.0 382,567 + -1.7 382,567 + -1.5 382,567 + -1.2 382,567 + -0.7 382,567 + -1.2 382,567 + +0.8 382,567 + +0.5 382,567 + -0.7 382,567 + +1.0 382,567 + -0.0 382,567 + +1.0 382,567 + -0.5 382,567 + -0.2 382,567 + +0.2 382,567 + -0.3 382,567 + +1.0 382,567 + -0.0 382,567 + +0.7 382,567 + -0.1 382,567 + -0.1 382,568 - -0.0 382,568 - -0.7 382,568 - -0.2 382,568 - -0.0 382,568 - -0.0 382,568 - -2.2 382,568 - -1.1 382,568 - +0.6 382,568 - -0.7 382,568 - +0.1 382,568 - -0.0 382,568 - -0.0 382,568 - -0.3 382,568 - -0.8 382,568 - -0.1 382,569 + -1.0 382,569 + +0.1 382,569 + -0.6 382,569 + -0.5 382,569 + -2.0 382,569 + +1.2 382,569 + +0.7 382,570 - +0.4 382,570 - -1.5 382,570 - -1.5 382,597 + -0.5 382,598 - -0.0 382,598 - -1.0 382,620 + -0.2 382,621 - -0.3 382,666 + GFF353 0.10 -0.2 382,666 + GFF353 0.10 -0.3 382,700 + GFF353 0.22 +0.4 382,701 - GFF353 0.23 -0.2 382,737 - GFF353 0.36 -0.4 382,769 - GFF353 0.47 +0.6 382,769 - GFF353 0.47 -1.0 382,798 + GFF353 0.58 +1.2 382,798 + GFF353 0.58 +1.3 382,799 - GFF353 0.58 -1.0 382,866 + GFF353 0.83 +0.0 382,866 + GFF353 0.83 -0.8 382,866 + GFF353 0.83 +1.0 382,867 - GFF353 0.83 -1.8 382,867 - GFF353 0.83 -0.0 382,867 - GFF353 0.83 -0.3 382,867 - GFF353 0.83 -0.3 382,867 - GFF353 0.83 -2.0 382,869 - GFF353 0.84 -0.3 382,912 - -0.0 382,928 + +0.1 382,943 - -0.2 382,961 - -1.2 382,961 - -0.6 382,997 + -0.1 383,030 + -2.0 383,031 - -1.2 383,031 - -1.8 383,031 - -1.7 383,052 - +0.7 383,052 - +0.4 383,078 + GFF354 0.10 +0.4 383,099 + GFF354 0.12 -0.0 383,185 - GFF354 0.18 -1.3 383,219 + GFF354 0.20 -1.3 383,236 - GFF354 0.21 +0.3 383,411 + GFF354 0.33 -1.3 383,411 + GFF354 0.33 -1.1 383,411 + GFF354 0.33 +0.3 383,412 - GFF354 0.33 +0.4 383,412 - GFF354 0.33 -1.2 383,412 - GFF354 0.33 -2.0 383,412 - GFF354 0.33 -2.3 383,435 + GFF354 0.35 -1.6 383,435 + GFF354 0.35 -1.0 383,435 + GFF354 0.35 +1.6 383,504 + GFF354 0.39 -1.0 383,504 + GFF354 0.39 -0.6 383,505 - GFF354 0.40 -1.0 383,582 + GFF354 0.45 -0.5 383,603 - GFF354 0.46 +0.1 383,642 - GFF354 0.49 -1.8 383,642 - GFF354 0.49 -0.8 383,739 + GFF354 0.56 -0.0 383,739 + GFF354 0.56 -0.0 383,739 + GFF354 0.56 -1.0 383,740 - GFF354 0.56 -1.8 383,740 - GFF354 0.56 -0.5 383,740 - GFF354 0.56 -0.6 383,740 - GFF354 0.56 +0.4 383,740 - GFF354 0.56 -0.8 383,740 - GFF354 0.56 -1.6 383,740 - GFF354 0.56 -0.0 383,740 - GFF354 0.56 -0.0 383,740 - GFF354 0.56 -0.0 383,740 - GFF354 0.56 -1.0 383,740 - GFF354 0.56 -0.0 383,741 + GFF354 0.56 -1.5 383,742 - GFF354 0.56 -0.8 383,742 - GFF354 0.56 -0.0 383,861 + GFF354 0.64 -0.0 384,115 + GFF354 0.81 +0.4 384,116 - GFF354 0.81 -1.8 384,179 + GFF354 0.86 -1.2 384,180 - GFF354 0.86 +0.2 384,194 + GFF354 0.87 -1.3 384,194 + GFF354 0.87 -1.3 384,194 + GFF354 0.87 -0.6 384,195 - GFF354 0.87 -0.0 384,214 - GFF354 0.88 -2.7 384,218 + GFF354 0.88 -0.5 384,219 - GFF354 0.88 -0.1 384,219 - GFF354 0.88 -0.0 384,257 + -1.3 384,257 + -1.3 384,257 + -0.3 384,257 + -1.0 384,258 - -0.5 384,303 + -0.0 384,303 + -1.0 384,304 - -0.0 384,304 - +0.5 384,304 - +0.2 384,312 + +0.3 384,472 - -1.3 384,485 + -0.6 384,486 - -0.5 384,706 + GFF355 0.41 +0.7 384,706 + GFF355 0.41 -0.1 384,706 + GFF355 0.41 -0.0 384,706 + GFF355 0.41 -1.8 384,707 - GFF355 0.41 +0.3 384,707 - GFF355 0.41 -0.8 384,707 - GFF355 0.41 +0.3 384,707 - GFF355 0.41 +0.6 384,707 - GFF355 0.41 -1.3 384,707 - GFF355 0.41 -0.6 384,707 - GFF355 0.41 -1.3 384,720 - GFF355 0.43 -0.6 384,720 - GFF355 0.43 -0.7 384,741 - GFF355 0.46 -1.6 384,741 - GFF355 0.46 +0.3 384,756 - GFF355 0.48 -0.2 384,803 - GFF355 0.55 -0.0 384,803 - GFF355 0.55 -0.7 384,860 - GFF355 0.63 -0.9 384,860 - GFF355 0.63 -0.0 384,860 - GFF355 0.63 -0.8 385,001 - GFF355 0.83 -0.5 385,011 - GFF355 0.84 -1.4 385,011 - GFF355 0.84 -0.0 385,096 - -0.2 385,096 - -0.0 385,118 - -0.1 385,118 - -0.0 385,124 + +0.2 385,125 - +0.0 385,125 - -2.7 385,141 + +0.7 385,141 + -2.0 385,142 - -0.1 385,179 + +0.1 385,179 + -1.0 385,180 - +0.7 385,180 - -1.1 385,180 - +0.2 385,181 + +1.0 385,182 - -1.0 385,182 - -1.8 385,212 + -0.7 385,212 + -0.1 385,212 + -2.2 385,212 + -2.8 385,212 + -0.5 385,213 - -0.0 385,213 - -1.0 385,213 - -0.4 385,220 + -0.8 385,232 + -0.0 385,232 + -1.3 385,232 + -1.3 385,232 + -1.3 385,233 - -0.3 385,248 + -0.6 385,346 + -0.0
Or see this region's nucleotide sequence