Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF330 and GFF331 are separated by 110 nucleotides GFF331 and GFF332 are separated by 216 nucleotides
GFF330 - Soluble pyridine nucleotide transhydrogenase, at 353,279 to 355,072
GFF330
GFF331 - hypothetical protein, at 355,183 to 355,656
GFF331
GFF332 - hypothetical protein, at 355,873 to 357,477
GFF332
Position (kb) 355
356 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 354.350 kb on - strand, within GFF330 at 354.350 kb on - strand, within GFF330 at 354.437 kb on - strand, within GFF330 at 354.437 kb on - strand, within GFF330 at 354.521 kb on - strand, within GFF330 at 354.539 kb on + strand, within GFF330 at 354.652 kb on + strand, within GFF330 at 354.653 kb on - strand, within GFF330 at 354.655 kb on - strand, within GFF330 at 354.706 kb on + strand, within GFF330 at 354.706 kb on + strand, within GFF330 at 354.706 kb on + strand, within GFF330 at 354.706 kb on + strand, within GFF330 at 354.707 kb on - strand, within GFF330 at 354.707 kb on - strand, within GFF330 at 354.707 kb on - strand, within GFF330 at 354.707 kb on - strand, within GFF330 at 354.787 kb on + strand, within GFF330 at 354.788 kb on - strand, within GFF330 at 354.788 kb on - strand, within GFF330 at 354.801 kb on - strand, within GFF330 at 354.958 kb on + strand at 354.959 kb on - strand at 355.052 kb on + strand at 355.081 kb on + strand at 355.082 kb on - strand at 355.083 kb on + strand at 355.083 kb on + strand at 355.084 kb on - strand at 355.084 kb on - strand at 355.084 kb on - strand at 355.084 kb on - strand at 355.084 kb on - strand at 355.084 kb on - strand at 355.084 kb on - strand at 355.084 kb on - strand at 355.084 kb on - strand at 355.084 kb on - strand at 355.084 kb on - strand at 355.084 kb on - strand at 355.084 kb on - strand at 355.084 kb on - strand at 355.084 kb on - strand at 355.085 kb on + strand at 355.085 kb on + strand at 355.085 kb on + strand at 355.085 kb on + strand at 355.085 kb on + strand at 355.085 kb on + strand at 355.085 kb on + strand at 355.086 kb on - strand at 355.086 kb on - strand at 355.086 kb on - strand at 355.086 kb on - strand at 355.086 kb on - strand at 355.086 kb on - strand at 355.086 kb on - strand at 355.093 kb on - strand at 355.093 kb on - strand at 355.106 kb on + strand at 355.159 kb on + strand at 355.160 kb on - strand at 355.160 kb on - strand at 355.269 kb on + strand, within GFF331 at 355.270 kb on - strand, within GFF331 at 355.283 kb on + strand, within GFF331 at 355.284 kb on - strand, within GFF331 at 355.284 kb on - strand, within GFF331 at 355.286 kb on + strand, within GFF331 at 355.296 kb on + strand, within GFF331 at 355.297 kb on - strand, within GFF331 at 355.358 kb on + strand, within GFF331 at 355.358 kb on + strand, within GFF331 at 355.358 kb on + strand, within GFF331 at 355.359 kb on - strand, within GFF331 at 355.359 kb on - strand, within GFF331 at 355.377 kb on + strand, within GFF331 at 355.378 kb on - strand, within GFF331 at 355.408 kb on - strand, within GFF331 at 355.424 kb on + strand, within GFF331 at 355.425 kb on - strand, within GFF331 at 355.425 kb on - strand, within GFF331 at 355.505 kb on + strand, within GFF331 at 355.505 kb on + strand, within GFF331 at 355.506 kb on - strand, within GFF331 at 355.506 kb on - strand, within GFF331 at 355.506 kb on - strand, within GFF331 at 355.506 kb on - strand, within GFF331 at 355.536 kb on + strand, within GFF331 at 355.536 kb on + strand, within GFF331 at 355.536 kb on + strand, within GFF331 at 355.536 kb on + strand, within GFF331 at 355.537 kb on - strand, within GFF331 at 355.537 kb on - strand, within GFF331 at 355.537 kb on - strand, within GFF331 at 355.537 kb on - strand, within GFF331 at 355.537 kb on - strand, within GFF331 at 355.537 kb on - strand, within GFF331 at 355.556 kb on + strand, within GFF331 at 355.556 kb on + strand, within GFF331 at 355.556 kb on + strand, within GFF331 at 355.557 kb on - strand, within GFF331 at 355.557 kb on - strand, within GFF331 at 355.557 kb on - strand, within GFF331 at 355.626 kb on + strand at 355.627 kb on - strand at 355.636 kb on + strand at 355.637 kb on - strand at 355.647 kb on + strand at 355.647 kb on + strand at 355.656 kb on + strand at 355.656 kb on + strand at 355.656 kb on + strand at 355.657 kb on - strand at 355.693 kb on + strand at 355.726 kb on - strand at 355.737 kb on + strand at 355.737 kb on + strand at 355.748 kb on - strand at 355.751 kb on + strand at 355.756 kb on + strand at 355.771 kb on - strand at 355.795 kb on + strand at 355.814 kb on + strand at 355.834 kb on - strand at 355.846 kb on + strand at 355.871 kb on + strand at 355.887 kb on - strand at 355.925 kb on + strand at 355.939 kb on + strand at 355.942 kb on + strand at 355.942 kb on + strand at 355.942 kb on + strand at 355.943 kb on - strand at 355.943 kb on - strand at 355.943 kb on - strand at 355.943 kb on - strand at 356.017 kb on + strand at 356.029 kb on + strand at 356.029 kb on + strand at 356.029 kb on + strand at 356.029 kb on + strand at 356.030 kb on - strand at 356.030 kb on - strand at 356.030 kb on - strand at 356.030 kb on - strand at 356.030 kb on - strand at 356.030 kb on - strand at 356.061 kb on + strand, within GFF332 at 356.061 kb on + strand, within GFF332 at 356.061 kb on + strand, within GFF332 at 356.061 kb on + strand, within GFF332 at 356.061 kb on + strand, within GFF332 at 356.062 kb on - strand, within GFF332 at 356.062 kb on - strand, within GFF332 at 356.062 kb on - strand, within GFF332 at 356.062 kb on - strand, within GFF332 at 356.096 kb on + strand, within GFF332 at 356.096 kb on + strand, within GFF332 at 356.096 kb on + strand, within GFF332 at 356.096 kb on + strand, within GFF332 at 356.134 kb on + strand, within GFF332 at 356.134 kb on + strand, within GFF332 at 356.135 kb on - strand, within GFF332 at 356.135 kb on - strand, within GFF332 at 356.135 kb on - strand, within GFF332 at 356.135 kb on - strand, within GFF332 at 356.135 kb on - strand, within GFF332 at 356.135 kb on - strand, within GFF332 at 356.158 kb on + strand, within GFF332 at 356.158 kb on + strand, within GFF332 at 356.158 kb on + strand, within GFF332 at 356.158 kb on + strand, within GFF332 at 356.158 kb on + strand, within GFF332 at 356.158 kb on + strand, within GFF332 at 356.158 kb on + strand, within GFF332 at 356.158 kb on + strand, within GFF332 at 356.158 kb on + strand, within GFF332 at 356.158 kb on + strand, within GFF332 at 356.158 kb on + strand, within GFF332 at 356.158 kb on + strand, within GFF332 at 356.158 kb on + strand, within GFF332 at 356.159 kb on - strand, within GFF332 at 356.159 kb on - strand, within GFF332 at 356.159 kb on - strand, within GFF332 at 356.159 kb on - strand, within GFF332 at 356.159 kb on - strand, within GFF332 at 356.159 kb on - strand, within GFF332 at 356.304 kb on - strand, within GFF332 at 356.356 kb on + strand, within GFF332 at 356.357 kb on - strand, within GFF332 at 356.379 kb on + strand, within GFF332 at 356.398 kb on + strand, within GFF332 at 356.398 kb on + strand, within GFF332 at 356.398 kb on + strand, within GFF332 at 356.398 kb on + strand, within GFF332 at 356.399 kb on - strand, within GFF332 at 356.399 kb on - strand, within GFF332 at 356.399 kb on - strand, within GFF332 at 356.434 kb on - strand, within GFF332 at 356.438 kb on + strand, within GFF332 at 356.438 kb on + strand, within GFF332 at 356.439 kb on - strand, within GFF332 at 356.469 kb on + strand, within GFF332 at 356.469 kb on + strand, within GFF332 at 356.469 kb on + strand, within GFF332 at 356.470 kb on - strand, within GFF332 at 356.470 kb on - strand, within GFF332 at 356.470 kb on - strand, within GFF332 at 356.470 kb on - strand, within GFF332 at 356.470 kb on - strand, within GFF332 at 356.480 kb on - strand, within GFF332 at 356.490 kb on + strand, within GFF332 at 356.490 kb on + strand, within GFF332 at 356.491 kb on - strand, within GFF332 at 356.491 kb on - strand, within GFF332 at 356.491 kb on - strand, within GFF332 at 356.491 kb on - strand, within GFF332 at 356.550 kb on + strand, within GFF332 at 356.550 kb on + strand, within GFF332 at 356.637 kb on + strand, within GFF332 at 356.637 kb on + strand, within GFF332 at 356.650 kb on + strand, within GFF332 at 356.650 kb on + strand, within GFF332 at 356.650 kb on + strand, within GFF332 at 356.650 kb on + strand, within GFF332 at 356.650 kb on + strand, within GFF332 at 356.650 kb on + strand, within GFF332 at 356.651 kb on - strand, within GFF332 at 356.651 kb on - strand, within GFF332 at 356.651 kb on - strand, within GFF332 at 356.651 kb on - strand, within GFF332 at 356.651 kb on - strand, within GFF332 at 356.651 kb on - strand, within GFF332 at 356.651 kb on - strand, within GFF332 at 356.652 kb on + strand, within GFF332 at 356.652 kb on + strand, within GFF332 at 356.652 kb on + strand, within GFF332 at 356.653 kb on - strand, within GFF332 at 356.653 kb on - strand, within GFF332 at 356.653 kb on - strand, within GFF332 at 356.653 kb on - strand, within GFF332 at 356.653 kb on - strand, within GFF332 at 356.653 kb on - strand, within GFF332
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 354,350 - GFF330 0.60 -1.5 354,350 - GFF330 0.60 -0.8 354,437 - GFF330 0.65 -1.2 354,437 - GFF330 0.65 -1.0 354,521 - GFF330 0.69 +0.2 354,539 + GFF330 0.70 -1.0 354,652 + GFF330 0.77 -1.2 354,653 - GFF330 0.77 -2.2 354,655 - GFF330 0.77 -0.7 354,706 + GFF330 0.80 -1.0 354,706 + GFF330 0.80 +0.6 354,706 + GFF330 0.80 -1.6 354,706 + GFF330 0.80 -2.2 354,707 - GFF330 0.80 -0.8 354,707 - GFF330 0.80 -0.0 354,707 - GFF330 0.80 -0.6 354,707 - GFF330 0.80 -1.0 354,787 + GFF330 0.84 -3.2 354,788 - GFF330 0.84 -1.8 354,788 - GFF330 0.84 -3.1 354,801 - GFF330 0.85 +0.4 354,958 + -2.4 354,959 - -1.0 355,052 + -1.1 355,081 + -0.6 355,082 - -2.2 355,083 + -1.0 355,083 + -1.2 355,084 - +0.6 355,084 - +0.3 355,084 - -1.5 355,084 - +0.3 355,084 - -1.5 355,084 - -2.2 355,084 - -1.0 355,084 - -1.1 355,084 - -0.9 355,084 - -1.5 355,084 - -0.6 355,084 - -0.4 355,084 - +0.4 355,084 - -1.4 355,084 - -1.5 355,085 + -0.0 355,085 + -1.0 355,085 + -3.3 355,085 + -1.9 355,085 + -0.3 355,085 + -1.6 355,085 + -1.6 355,086 - -1.5 355,086 - -1.0 355,086 - -0.9 355,086 - -0.8 355,086 - -1.2 355,086 - -0.6 355,086 - -1.4 355,093 - -0.5 355,093 - -0.8 355,106 + +0.8 355,159 + +0.2 355,160 - +0.2 355,160 - -1.0 355,269 + GFF331 0.18 -1.4 355,270 - GFF331 0.18 -2.7 355,283 + GFF331 0.21 -0.6 355,284 - GFF331 0.21 -0.2 355,284 - GFF331 0.21 -1.7 355,286 + GFF331 0.22 -1.3 355,296 + GFF331 0.24 -2.0 355,297 - GFF331 0.24 -0.5 355,358 + GFF331 0.37 -2.5 355,358 + GFF331 0.37 -1.3 355,358 + GFF331 0.37 -0.6 355,359 - GFF331 0.37 -1.7 355,359 - GFF331 0.37 -1.1 355,377 + GFF331 0.41 -0.7 355,378 - GFF331 0.41 -1.5 355,408 - GFF331 0.47 -1.0 355,424 + GFF331 0.51 -0.8 355,425 - GFF331 0.51 +0.7 355,425 - GFF331 0.51 -0.6 355,505 + GFF331 0.68 -0.8 355,505 + GFF331 0.68 -0.3 355,506 - GFF331 0.68 -0.5 355,506 - GFF331 0.68 -0.5 355,506 - GFF331 0.68 -0.1 355,506 - GFF331 0.68 -1.3 355,536 + GFF331 0.74 -1.7 355,536 + GFF331 0.74 -0.5 355,536 + GFF331 0.74 -1.3 355,536 + GFF331 0.74 -0.3 355,537 - GFF331 0.75 -1.3 355,537 - GFF331 0.75 -1.0 355,537 - GFF331 0.75 -2.4 355,537 - GFF331 0.75 -1.7 355,537 - GFF331 0.75 -1.8 355,537 - GFF331 0.75 -0.2 355,556 + GFF331 0.79 -1.6 355,556 + GFF331 0.79 -1.5 355,556 + GFF331 0.79 -1.2 355,557 - GFF331 0.79 -0.0 355,557 - GFF331 0.79 -1.3 355,557 - GFF331 0.79 -0.8 355,626 + -3.8 355,627 - -2.5 355,636 + -1.0 355,637 - -1.1 355,647 + -1.0 355,647 + -1.1 355,656 + -0.2 355,656 + -1.1 355,656 + -0.9 355,657 - -1.4 355,693 + -0.3 355,726 - +0.3 355,737 + -0.7 355,737 + -0.5 355,748 - -2.1 355,751 + +0.5 355,756 + -0.7 355,771 - -2.2 355,795 + +1.3 355,814 + -0.8 355,834 - +1.3 355,846 + +0.3 355,871 + +0.1 355,887 - -1.0 355,925 + +0.1 355,939 + +0.7 355,942 + +0.1 355,942 + -1.2 355,942 + -1.0 355,943 - -1.1 355,943 - -0.6 355,943 - -1.0 355,943 - +0.4 356,017 + +0.4 356,029 + -1.0 356,029 + -0.0 356,029 + -0.3 356,029 + -1.8 356,030 - -0.9 356,030 - -0.6 356,030 - -0.6 356,030 - +0.1 356,030 - -0.7 356,030 - -0.1 356,061 + GFF332 0.12 -0.5 356,061 + GFF332 0.12 -0.6 356,061 + GFF332 0.12 -1.1 356,061 + GFF332 0.12 +1.0 356,061 + GFF332 0.12 -0.7 356,062 - GFF332 0.12 -0.6 356,062 - GFF332 0.12 -0.8 356,062 - GFF332 0.12 -0.9 356,062 - GFF332 0.12 -0.3 356,096 + GFF332 0.14 -0.5 356,096 + GFF332 0.14 -0.0 356,096 + GFF332 0.14 -0.2 356,096 + GFF332 0.14 +0.8 356,134 + GFF332 0.16 -0.8 356,134 + GFF332 0.16 -0.4 356,135 - GFF332 0.16 +0.4 356,135 - GFF332 0.16 +0.1 356,135 - GFF332 0.16 -0.7 356,135 - GFF332 0.16 +0.4 356,135 - GFF332 0.16 -0.1 356,135 - GFF332 0.16 -0.6 356,158 + GFF332 0.18 -2.2 356,158 + GFF332 0.18 -0.1 356,158 + GFF332 0.18 -0.2 356,158 + GFF332 0.18 +0.1 356,158 + GFF332 0.18 +0.8 356,158 + GFF332 0.18 -0.7 356,158 + GFF332 0.18 +0.3 356,158 + GFF332 0.18 -0.9 356,158 + GFF332 0.18 -0.3 356,158 + GFF332 0.18 -1.3 356,158 + GFF332 0.18 +0.1 356,158 + GFF332 0.18 +0.3 356,158 + GFF332 0.18 +0.2 356,159 - GFF332 0.18 -0.9 356,159 - GFF332 0.18 -1.6 356,159 - GFF332 0.18 +0.8 356,159 - GFF332 0.18 -2.2 356,159 - GFF332 0.18 -0.6 356,159 - GFF332 0.18 +2.0 356,304 - GFF332 0.27 -0.8 356,356 + GFF332 0.30 +0.3 356,357 - GFF332 0.30 -0.9 356,379 + GFF332 0.32 -0.0 356,398 + GFF332 0.33 -0.5 356,398 + GFF332 0.33 -0.6 356,398 + GFF332 0.33 +0.3 356,398 + GFF332 0.33 +0.7 356,399 - GFF332 0.33 -0.7 356,399 - GFF332 0.33 +0.3 356,399 - GFF332 0.33 -0.5 356,434 - GFF332 0.35 -0.7 356,438 + GFF332 0.35 +1.2 356,438 + GFF332 0.35 -0.1 356,439 - GFF332 0.35 +0.3 356,469 + GFF332 0.37 -1.7 356,469 + GFF332 0.37 -1.5 356,469 + GFF332 0.37 -0.0 356,470 - GFF332 0.37 -1.3 356,470 - GFF332 0.37 -0.9 356,470 - GFF332 0.37 +0.6 356,470 - GFF332 0.37 +0.2 356,470 - GFF332 0.37 -1.2 356,480 - GFF332 0.38 -0.7 356,490 + GFF332 0.38 -1.0 356,490 + GFF332 0.38 -2.2 356,491 - GFF332 0.39 -0.0 356,491 - GFF332 0.39 -0.5 356,491 - GFF332 0.39 +0.2 356,491 - GFF332 0.39 -0.7 356,550 + GFF332 0.42 -2.6 356,550 + GFF332 0.42 -1.5 356,637 + GFF332 0.48 -1.6 356,637 + GFF332 0.48 -0.1 356,650 + GFF332 0.48 -0.4 356,650 + GFF332 0.48 +1.0 356,650 + GFF332 0.48 -0.3 356,650 + GFF332 0.48 +0.4 356,650 + GFF332 0.48 -1.8 356,650 + GFF332 0.48 -0.9 356,651 - GFF332 0.48 -0.2 356,651 - GFF332 0.48 -1.3 356,651 - GFF332 0.48 -0.6 356,651 - GFF332 0.48 +0.8 356,651 - GFF332 0.48 +0.1 356,651 - GFF332 0.48 -0.4 356,651 - GFF332 0.48 -1.4 356,652 + GFF332 0.49 -0.3 356,652 + GFF332 0.49 +0.4 356,652 + GFF332 0.49 -0.4 356,653 - GFF332 0.49 -0.6 356,653 - GFF332 0.49 +1.9 356,653 - GFF332 0.49 -1.6 356,653 - GFF332 0.49 -0.2 356,653 - GFF332 0.49 -0.0 356,653 - GFF332 0.49 -0.3
Or see this region's nucleotide sequence