Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF328 and GFF329 are separated by 67 nucleotides GFF329 and GFF330 are separated by 96 nucleotides GFF330 and GFF331 are separated by 110 nucleotides GFF331 and GFF332 are separated by 216 nucleotides
GFF328 - hypothetical protein, at 351,685 to 352,566
GFF328
GFF329 - hypothetical protein, at 352,634 to 353,182
GFF329
GFF330 - Soluble pyridine nucleotide transhydrogenase, at 353,279 to 355,072
GFF330
GFF331 - hypothetical protein, at 355,183 to 355,656
GFF331
GFF332 - hypothetical protein, at 355,873 to 357,477
GFF332
Position (kb) 353
354
355
356 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 352.297 kb on - strand, within GFF328 at 352.392 kb on + strand, within GFF328 at 352.403 kb on + strand, within GFF328 at 352.403 kb on + strand, within GFF328 at 352.403 kb on + strand, within GFF328 at 352.403 kb on + strand, within GFF328 at 352.403 kb on + strand, within GFF328 at 352.404 kb on - strand, within GFF328 at 352.546 kb on - strand at 352.553 kb on + strand at 352.553 kb on + strand at 352.553 kb on + strand at 352.554 kb on - strand at 352.554 kb on - strand at 352.561 kb on - strand at 352.564 kb on + strand at 352.565 kb on - strand at 352.589 kb on + strand at 352.697 kb on - strand, within GFF329 at 352.697 kb on - strand, within GFF329 at 352.760 kb on + strand, within GFF329 at 352.760 kb on + strand, within GFF329 at 352.761 kb on - strand, within GFF329 at 352.761 kb on - strand, within GFF329 at 352.761 kb on - strand, within GFF329 at 352.761 kb on - strand, within GFF329 at 352.761 kb on - strand, within GFF329 at 352.761 kb on - strand, within GFF329 at 352.761 kb on - strand, within GFF329 at 352.761 kb on - strand, within GFF329 at 352.761 kb on - strand, within GFF329 at 352.789 kb on + strand, within GFF329 at 352.796 kb on + strand, within GFF329 at 352.828 kb on - strand, within GFF329 at 352.828 kb on - strand, within GFF329 at 352.863 kb on - strand, within GFF329 at 352.885 kb on + strand, within GFF329 at 352.886 kb on - strand, within GFF329 at 352.942 kb on + strand, within GFF329 at 352.957 kb on + strand, within GFF329 at 352.957 kb on + strand, within GFF329 at 353.041 kb on + strand, within GFF329 at 353.079 kb on + strand, within GFF329 at 353.080 kb on - strand, within GFF329 at 353.080 kb on - strand, within GFF329 at 353.080 kb on - strand, within GFF329 at 353.116 kb on + strand, within GFF329 at 353.117 kb on - strand, within GFF329 at 353.117 kb on - strand, within GFF329 at 353.175 kb on + strand at 353.175 kb on + strand at 353.175 kb on + strand at 353.175 kb on + strand at 353.175 kb on + strand at 353.175 kb on + strand at 353.176 kb on - strand at 353.176 kb on - strand at 353.176 kb on - strand at 353.176 kb on - strand at 353.183 kb on - strand at 353.183 kb on - strand at 353.183 kb on - strand at 353.183 kb on - strand at 353.184 kb on + strand at 353.184 kb on + strand at 353.185 kb on - strand at 353.185 kb on - strand at 353.185 kb on - strand at 353.185 kb on - strand at 353.185 kb on - strand at 353.185 kb on - strand at 353.185 kb on - strand at 353.185 kb on - strand at 353.192 kb on + strand at 353.192 kb on + strand at 353.192 kb on + strand at 353.193 kb on - strand at 353.193 kb on - strand at 353.193 kb on - strand at 353.193 kb on - strand at 353.193 kb on - strand at 353.201 kb on - strand at 353.204 kb on - strand at 353.204 kb on - strand at 353.227 kb on + strand at 353.227 kb on + strand at 353.228 kb on - strand at 353.231 kb on + strand at 353.231 kb on + strand at 353.231 kb on + strand at 353.231 kb on + strand at 353.231 kb on + strand at 353.232 kb on - strand at 353.232 kb on - strand at 353.232 kb on - strand at 353.233 kb on - strand at 353.234 kb on + strand at 353.234 kb on + strand at 353.235 kb on - strand at 353.235 kb on - strand at 353.235 kb on - strand at 353.235 kb on - strand at 353.235 kb on - strand at 353.235 kb on - strand at 353.237 kb on + strand at 353.237 kb on + strand at 353.238 kb on - strand at 353.238 kb on - strand at 353.238 kb on - strand at 353.239 kb on + strand at 353.239 kb on + strand at 353.250 kb on + strand at 353.250 kb on + strand at 353.252 kb on + strand at 353.253 kb on - strand at 353.253 kb on - strand at 353.261 kb on + strand at 353.271 kb on + strand at 353.280 kb on + strand at 353.281 kb on - strand at 353.309 kb on - strand at 353.309 kb on - strand at 353.309 kb on - strand at 353.309 kb on - strand at 353.348 kb on + strand at 353.349 kb on - strand at 353.647 kb on + strand, within GFF330 at 353.647 kb on + strand, within GFF330 at 353.648 kb on - strand, within GFF330 at 353.650 kb on - strand, within GFF330 at 353.764 kb on + strand, within GFF330 at 353.867 kb on - strand, within GFF330 at 353.959 kb on - strand, within GFF330 at 353.959 kb on - strand, within GFF330 at 353.959 kb on - strand, within GFF330 at 353.959 kb on - strand, within GFF330 at 353.959 kb on - strand, within GFF330 at 354.007 kb on + strand, within GFF330 at 354.008 kb on - strand, within GFF330 at 354.008 kb on - strand, within GFF330 at 354.127 kb on - strand, within GFF330 at 354.152 kb on - strand, within GFF330 at 354.175 kb on + strand, within GFF330 at 354.350 kb on - strand, within GFF330 at 354.350 kb on - strand, within GFF330 at 354.437 kb on - strand, within GFF330 at 354.437 kb on - strand, within GFF330 at 354.521 kb on - strand, within GFF330 at 354.539 kb on + strand, within GFF330 at 354.652 kb on + strand, within GFF330 at 354.653 kb on - strand, within GFF330 at 354.655 kb on - strand, within GFF330 at 354.706 kb on + strand, within GFF330 at 354.706 kb on + strand, within GFF330 at 354.706 kb on + strand, within GFF330 at 354.706 kb on + strand, within GFF330 at 354.707 kb on - strand, within GFF330 at 354.707 kb on - strand, within GFF330 at 354.707 kb on - strand, within GFF330 at 354.707 kb on - strand, within GFF330 at 354.787 kb on + strand, within GFF330 at 354.788 kb on - strand, within GFF330 at 354.788 kb on - strand, within GFF330 at 354.801 kb on - strand, within GFF330 at 354.958 kb on + strand at 354.959 kb on - strand at 355.052 kb on + strand at 355.081 kb on + strand at 355.082 kb on - strand at 355.083 kb on + strand at 355.083 kb on + strand at 355.084 kb on - strand at 355.084 kb on - strand at 355.084 kb on - strand at 355.084 kb on - strand at 355.084 kb on - strand at 355.084 kb on - strand at 355.084 kb on - strand at 355.084 kb on - strand at 355.084 kb on - strand at 355.084 kb on - strand at 355.084 kb on - strand at 355.084 kb on - strand at 355.084 kb on - strand at 355.084 kb on - strand at 355.084 kb on - strand at 355.085 kb on + strand at 355.085 kb on + strand at 355.085 kb on + strand at 355.085 kb on + strand at 355.085 kb on + strand at 355.085 kb on + strand at 355.085 kb on + strand at 355.086 kb on - strand at 355.086 kb on - strand at 355.086 kb on - strand at 355.086 kb on - strand at 355.086 kb on - strand at 355.086 kb on - strand at 355.086 kb on - strand at 355.093 kb on - strand at 355.093 kb on - strand at 355.106 kb on + strand at 355.159 kb on + strand at 355.160 kb on - strand at 355.160 kb on - strand at 355.269 kb on + strand, within GFF331 at 355.270 kb on - strand, within GFF331 at 355.283 kb on + strand, within GFF331 at 355.284 kb on - strand, within GFF331 at 355.284 kb on - strand, within GFF331 at 355.286 kb on + strand, within GFF331 at 355.296 kb on + strand, within GFF331 at 355.297 kb on - strand, within GFF331 at 355.358 kb on + strand, within GFF331 at 355.358 kb on + strand, within GFF331 at 355.358 kb on + strand, within GFF331 at 355.359 kb on - strand, within GFF331 at 355.359 kb on - strand, within GFF331 at 355.377 kb on + strand, within GFF331 at 355.378 kb on - strand, within GFF331 at 355.408 kb on - strand, within GFF331 at 355.424 kb on + strand, within GFF331 at 355.425 kb on - strand, within GFF331 at 355.425 kb on - strand, within GFF331 at 355.505 kb on + strand, within GFF331 at 355.505 kb on + strand, within GFF331 at 355.506 kb on - strand, within GFF331 at 355.506 kb on - strand, within GFF331 at 355.506 kb on - strand, within GFF331 at 355.506 kb on - strand, within GFF331 at 355.536 kb on + strand, within GFF331 at 355.536 kb on + strand, within GFF331 at 355.536 kb on + strand, within GFF331 at 355.536 kb on + strand, within GFF331 at 355.537 kb on - strand, within GFF331 at 355.537 kb on - strand, within GFF331 at 355.537 kb on - strand, within GFF331 at 355.537 kb on - strand, within GFF331 at 355.537 kb on - strand, within GFF331 at 355.537 kb on - strand, within GFF331 at 355.556 kb on + strand, within GFF331 at 355.556 kb on + strand, within GFF331 at 355.556 kb on + strand, within GFF331 at 355.557 kb on - strand, within GFF331 at 355.557 kb on - strand, within GFF331 at 355.557 kb on - strand, within GFF331 at 355.626 kb on + strand at 355.627 kb on - strand at 355.636 kb on + strand at 355.637 kb on - strand at 355.647 kb on + strand at 355.647 kb on + strand at 355.656 kb on + strand at 355.656 kb on + strand at 355.656 kb on + strand at 355.657 kb on - strand at 355.693 kb on + strand at 355.726 kb on - strand at 355.737 kb on + strand at 355.737 kb on + strand at 355.748 kb on - strand at 355.751 kb on + strand at 355.756 kb on + strand at 355.771 kb on - strand at 355.795 kb on + strand at 355.814 kb on + strand at 355.834 kb on - strand at 355.846 kb on + strand at 355.871 kb on + strand at 355.887 kb on - strand at 355.925 kb on + strand at 355.939 kb on + strand at 355.942 kb on + strand at 355.942 kb on + strand at 355.942 kb on + strand at 355.943 kb on - strand at 355.943 kb on - strand at 355.943 kb on - strand at 355.943 kb on - strand at 356.017 kb on + strand at 356.029 kb on + strand at 356.029 kb on + strand at 356.029 kb on + strand at 356.029 kb on + strand at 356.030 kb on - strand at 356.030 kb on - strand at 356.030 kb on - strand at 356.030 kb on - strand at 356.030 kb on - strand at 356.030 kb on - strand at 356.061 kb on + strand, within GFF332 at 356.061 kb on + strand, within GFF332 at 356.061 kb on + strand, within GFF332 at 356.061 kb on + strand, within GFF332 at 356.061 kb on + strand, within GFF332 at 356.062 kb on - strand, within GFF332 at 356.062 kb on - strand, within GFF332 at 356.062 kb on - strand, within GFF332 at 356.062 kb on - strand, within GFF332
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 352,297 - GFF328 0.69 -1.0 352,392 + GFF328 0.80 +0.3 352,403 + GFF328 0.81 -1.0 352,403 + GFF328 0.81 -0.1 352,403 + GFF328 0.81 -0.6 352,403 + GFF328 0.81 -1.0 352,403 + GFF328 0.81 -0.4 352,404 - GFF328 0.82 -1.1 352,546 - +0.6 352,553 + -0.1 352,553 + -0.4 352,553 + -2.2 352,554 - -1.0 352,554 - -0.0 352,561 - +0.2 352,564 + +1.4 352,565 - -1.7 352,589 + +1.0 352,697 - GFF329 0.11 -1.3 352,697 - GFF329 0.11 +0.4 352,760 + GFF329 0.23 -0.8 352,760 + GFF329 0.23 -0.1 352,761 - GFF329 0.23 -1.0 352,761 - GFF329 0.23 -1.3 352,761 - GFF329 0.23 -0.3 352,761 - GFF329 0.23 +0.1 352,761 - GFF329 0.23 +0.2 352,761 - GFF329 0.23 +0.7 352,761 - GFF329 0.23 +0.6 352,761 - GFF329 0.23 -1.0 352,761 - GFF329 0.23 -1.2 352,789 + GFF329 0.28 +1.0 352,796 + GFF329 0.30 -1.0 352,828 - GFF329 0.35 -1.8 352,828 - GFF329 0.35 -1.8 352,863 - GFF329 0.42 -0.1 352,885 + GFF329 0.46 -0.0 352,886 - GFF329 0.46 -0.3 352,942 + GFF329 0.56 +0.0 352,957 + GFF329 0.59 -0.8 352,957 + GFF329 0.59 -1.6 353,041 + GFF329 0.74 +0.2 353,079 + GFF329 0.81 -1.6 353,080 - GFF329 0.81 -0.5 353,080 - GFF329 0.81 -0.0 353,080 - GFF329 0.81 -0.5 353,116 + GFF329 0.88 +1.3 353,117 - GFF329 0.88 -0.5 353,117 - GFF329 0.88 -1.0 353,175 + -1.6 353,175 + -1.0 353,175 + -0.6 353,175 + -0.2 353,175 + -0.2 353,175 + -0.6 353,176 - -0.2 353,176 - -0.5 353,176 - -0.0 353,176 - -0.4 353,183 - +0.4 353,183 - -0.6 353,183 - +0.2 353,183 - -0.4 353,184 + -0.7 353,184 + +0.2 353,185 - +0.3 353,185 - +1.2 353,185 - +0.1 353,185 - -1.3 353,185 - -0.8 353,185 - -0.8 353,185 - -0.6 353,185 - +0.7 353,192 + -0.0 353,192 + +0.1 353,192 + +0.4 353,193 - -0.0 353,193 - -0.3 353,193 - -1.0 353,193 - +1.2 353,193 - -0.8 353,201 - -1.3 353,204 - +0.3 353,204 - -0.2 353,227 + -2.2 353,227 + -0.0 353,228 - -0.6 353,231 + -1.0 353,231 + -1.6 353,231 + -0.9 353,231 + +1.2 353,231 + -0.1 353,232 - -0.1 353,232 - -0.0 353,232 - -0.5 353,233 - -2.5 353,234 + +0.2 353,234 + -0.4 353,235 - -1.1 353,235 - -0.6 353,235 - -0.1 353,235 - -0.9 353,235 - -0.1 353,235 - -0.9 353,237 + -1.0 353,237 + +1.1 353,238 - +0.7 353,238 - -0.2 353,238 - -0.4 353,239 + -0.3 353,239 + +0.5 353,250 + -2.7 353,250 + -0.5 353,252 + -0.1 353,253 - +0.6 353,253 - -0.3 353,261 + -0.3 353,271 + +0.6 353,280 + +1.0 353,281 - +0.5 353,309 - -1.0 353,309 - -2.2 353,309 - -0.0 353,309 - -3.3 353,348 + -1.6 353,349 - -1.2 353,647 + GFF330 0.21 -0.0 353,647 + GFF330 0.21 -1.0 353,648 - GFF330 0.21 -2.6 353,650 - GFF330 0.21 -1.9 353,764 + GFF330 0.27 -1.3 353,867 - GFF330 0.33 -2.2 353,959 - GFF330 0.38 -1.8 353,959 - GFF330 0.38 -0.3 353,959 - GFF330 0.38 -2.9 353,959 - GFF330 0.38 -1.8 353,959 - GFF330 0.38 -1.5 354,007 + GFF330 0.41 -1.4 354,008 - GFF330 0.41 -2.1 354,008 - GFF330 0.41 -1.3 354,127 - GFF330 0.47 -2.1 354,152 - GFF330 0.49 -1.0 354,175 + GFF330 0.50 -1.8 354,350 - GFF330 0.60 -1.5 354,350 - GFF330 0.60 -0.8 354,437 - GFF330 0.65 -1.2 354,437 - GFF330 0.65 -1.0 354,521 - GFF330 0.69 +0.2 354,539 + GFF330 0.70 -1.0 354,652 + GFF330 0.77 -1.2 354,653 - GFF330 0.77 -2.2 354,655 - GFF330 0.77 -0.7 354,706 + GFF330 0.80 -1.0 354,706 + GFF330 0.80 +0.6 354,706 + GFF330 0.80 -1.6 354,706 + GFF330 0.80 -2.2 354,707 - GFF330 0.80 -0.8 354,707 - GFF330 0.80 -0.0 354,707 - GFF330 0.80 -0.6 354,707 - GFF330 0.80 -1.0 354,787 + GFF330 0.84 -3.2 354,788 - GFF330 0.84 -1.8 354,788 - GFF330 0.84 -3.1 354,801 - GFF330 0.85 +0.4 354,958 + -2.4 354,959 - -1.0 355,052 + -1.1 355,081 + -0.6 355,082 - -2.2 355,083 + -1.0 355,083 + -1.2 355,084 - +0.6 355,084 - +0.3 355,084 - -1.5 355,084 - +0.3 355,084 - -1.5 355,084 - -2.2 355,084 - -1.0 355,084 - -1.1 355,084 - -0.9 355,084 - -1.5 355,084 - -0.6 355,084 - -0.4 355,084 - +0.4 355,084 - -1.4 355,084 - -1.5 355,085 + -0.0 355,085 + -1.0 355,085 + -3.3 355,085 + -1.9 355,085 + -0.3 355,085 + -1.6 355,085 + -1.6 355,086 - -1.5 355,086 - -1.0 355,086 - -0.9 355,086 - -0.8 355,086 - -1.2 355,086 - -0.6 355,086 - -1.4 355,093 - -0.5 355,093 - -0.8 355,106 + +0.8 355,159 + +0.2 355,160 - +0.2 355,160 - -1.0 355,269 + GFF331 0.18 -1.4 355,270 - GFF331 0.18 -2.7 355,283 + GFF331 0.21 -0.6 355,284 - GFF331 0.21 -0.2 355,284 - GFF331 0.21 -1.7 355,286 + GFF331 0.22 -1.3 355,296 + GFF331 0.24 -2.0 355,297 - GFF331 0.24 -0.5 355,358 + GFF331 0.37 -2.5 355,358 + GFF331 0.37 -1.3 355,358 + GFF331 0.37 -0.6 355,359 - GFF331 0.37 -1.7 355,359 - GFF331 0.37 -1.1 355,377 + GFF331 0.41 -0.7 355,378 - GFF331 0.41 -1.5 355,408 - GFF331 0.47 -1.0 355,424 + GFF331 0.51 -0.8 355,425 - GFF331 0.51 +0.7 355,425 - GFF331 0.51 -0.6 355,505 + GFF331 0.68 -0.8 355,505 + GFF331 0.68 -0.3 355,506 - GFF331 0.68 -0.5 355,506 - GFF331 0.68 -0.5 355,506 - GFF331 0.68 -0.1 355,506 - GFF331 0.68 -1.3 355,536 + GFF331 0.74 -1.7 355,536 + GFF331 0.74 -0.5 355,536 + GFF331 0.74 -1.3 355,536 + GFF331 0.74 -0.3 355,537 - GFF331 0.75 -1.3 355,537 - GFF331 0.75 -1.0 355,537 - GFF331 0.75 -2.4 355,537 - GFF331 0.75 -1.7 355,537 - GFF331 0.75 -1.8 355,537 - GFF331 0.75 -0.2 355,556 + GFF331 0.79 -1.6 355,556 + GFF331 0.79 -1.5 355,556 + GFF331 0.79 -1.2 355,557 - GFF331 0.79 -0.0 355,557 - GFF331 0.79 -1.3 355,557 - GFF331 0.79 -0.8 355,626 + -3.8 355,627 - -2.5 355,636 + -1.0 355,637 - -1.1 355,647 + -1.0 355,647 + -1.1 355,656 + -0.2 355,656 + -1.1 355,656 + -0.9 355,657 - -1.4 355,693 + -0.3 355,726 - +0.3 355,737 + -0.7 355,737 + -0.5 355,748 - -2.1 355,751 + +0.5 355,756 + -0.7 355,771 - -2.2 355,795 + +1.3 355,814 + -0.8 355,834 - +1.3 355,846 + +0.3 355,871 + +0.1 355,887 - -1.0 355,925 + +0.1 355,939 + +0.7 355,942 + +0.1 355,942 + -1.2 355,942 + -1.0 355,943 - -1.1 355,943 - -0.6 355,943 - -1.0 355,943 - +0.4 356,017 + +0.4 356,029 + -1.0 356,029 + -0.0 356,029 + -0.3 356,029 + -1.8 356,030 - -0.9 356,030 - -0.6 356,030 - -0.6 356,030 - +0.1 356,030 - -0.7 356,030 - -0.1 356,061 + GFF332 0.12 -0.5 356,061 + GFF332 0.12 -0.6 356,061 + GFF332 0.12 -1.1 356,061 + GFF332 0.12 +1.0 356,061 + GFF332 0.12 -0.7 356,062 - GFF332 0.12 -0.6 356,062 - GFF332 0.12 -0.8 356,062 - GFF332 0.12 -0.9 356,062 - GFF332 0.12 -0.3
Or see this region's nucleotide sequence