Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF312 and GFF313 are separated by 92 nucleotides GFF313 and GFF314 are separated by 58 nucleotides GFF314 and GFF315 are separated by 63 nucleotides GFF315 and GFF316 are separated by 55 nucleotides
GFF312 - Carbamoyl-phosphate synthase large chain, at 331,562 to 334,777
GFF312
GFF313 - Transcription elongation factor GreA, at 334,870 to 335,352
GFF313
GFF314 - hypothetical protein, at 335,411 to 335,866
GFF314
GFF315 - RNA-binding protein, at 335,930 to 336,238
GFF315
GFF316 - Ribosomal RNA large subunit methyltransferase E, at 336,294 to 336,914
GFF316
Position (kb) 334
335
336 Strain fitness (log2 ratio) -2
-1
0
1 at 334.743 kb on - strand at 334.780 kb on + strand at 334.780 kb on + strand at 334.780 kb on + strand at 334.780 kb on + strand at 334.780 kb on + strand at 334.780 kb on + strand at 334.780 kb on + strand at 334.781 kb on - strand at 334.781 kb on - strand at 334.785 kb on + strand at 334.785 kb on + strand at 334.785 kb on + strand at 334.785 kb on + strand at 334.791 kb on + strand at 334.791 kb on + strand at 334.791 kb on + strand at 334.798 kb on + strand at 334.798 kb on + strand at 334.798 kb on + strand at 334.802 kb on + strand at 334.802 kb on + strand at 334.806 kb on + strand at 334.806 kb on + strand at 334.806 kb on + strand at 334.832 kb on + strand at 334.833 kb on - strand at 334.841 kb on + strand at 334.841 kb on + strand at 334.843 kb on + strand at 334.860 kb on + strand at 334.950 kb on + strand, within GFF313 at 334.959 kb on + strand, within GFF313 at 335.017 kb on + strand, within GFF313 at 335.017 kb on + strand, within GFF313 at 335.097 kb on + strand, within GFF313 at 335.188 kb on + strand, within GFF313 at 335.339 kb on + strand at 335.339 kb on + strand at 335.339 kb on + strand at 335.339 kb on + strand at 335.339 kb on + strand at 335.339 kb on + strand at 335.339 kb on + strand at 335.344 kb on + strand at 335.344 kb on + strand at 335.351 kb on - strand at 335.395 kb on + strand at 335.395 kb on + strand at 335.395 kb on + strand at 335.404 kb on - strand at 335.404 kb on - strand at 335.454 kb on + strand at 335.454 kb on + strand at 335.454 kb on + strand at 335.454 kb on + strand at 335.454 kb on + strand at 335.454 kb on + strand at 335.455 kb on - strand at 335.455 kb on - strand at 335.458 kb on + strand, within GFF314 at 335.458 kb on + strand, within GFF314 at 335.458 kb on + strand, within GFF314 at 335.458 kb on + strand, within GFF314 at 335.459 kb on - strand, within GFF314 at 335.459 kb on - strand, within GFF314 at 335.459 kb on - strand, within GFF314 at 335.530 kb on + strand, within GFF314 at 335.530 kb on + strand, within GFF314 at 335.530 kb on + strand, within GFF314 at 335.530 kb on + strand, within GFF314 at 335.530 kb on + strand, within GFF314 at 335.531 kb on - strand, within GFF314 at 335.531 kb on - strand, within GFF314 at 335.547 kb on + strand, within GFF314 at 335.563 kb on + strand, within GFF314 at 335.564 kb on - strand, within GFF314 at 335.576 kb on + strand, within GFF314 at 335.576 kb on + strand, within GFF314 at 335.682 kb on + strand, within GFF314 at 335.718 kb on + strand, within GFF314 at 335.809 kb on + strand, within GFF314 at 335.816 kb on + strand, within GFF314 at 335.816 kb on + strand, within GFF314 at 335.816 kb on + strand, within GFF314 at 335.816 kb on + strand, within GFF314 at 335.816 kb on + strand, within GFF314 at 335.816 kb on + strand, within GFF314 at 335.817 kb on - strand, within GFF314 at 335.817 kb on - strand, within GFF314 at 335.818 kb on + strand, within GFF314 at 335.818 kb on + strand, within GFF314 at 335.818 kb on + strand, within GFF314 at 335.818 kb on + strand, within GFF314 at 335.818 kb on + strand, within GFF314 at 335.818 kb on + strand, within GFF314 at 335.818 kb on + strand, within GFF314 at 335.818 kb on + strand, within GFF314 at 335.818 kb on + strand, within GFF314 at 335.818 kb on + strand, within GFF314 at 335.819 kb on - strand, within GFF314 at 335.819 kb on - strand, within GFF314 at 335.819 kb on - strand, within GFF314 at 335.819 kb on - strand, within GFF314 at 335.819 kb on - strand, within GFF314 at 335.819 kb on - strand, within GFF314 at 335.819 kb on - strand, within GFF314 at 335.819 kb on - strand, within GFF314 at 335.819 kb on - strand, within GFF314 at 335.835 kb on + strand at 335.906 kb on + strand at 335.931 kb on + strand at 335.931 kb on + strand at 335.931 kb on + strand at 335.932 kb on - strand at 335.932 kb on - strand at 335.932 kb on - strand at 335.932 kb on - strand at 336.007 kb on + strand, within GFF315 at 336.053 kb on + strand, within GFF315 at 336.061 kb on + strand, within GFF315 at 336.100 kb on + strand, within GFF315 at 336.100 kb on + strand, within GFF315 at 336.101 kb on - strand, within GFF315 at 336.167 kb on + strand, within GFF315 at 336.185 kb on + strand, within GFF315 at 336.185 kb on + strand, within GFF315 at 336.186 kb on - strand, within GFF315 at 336.186 kb on - strand, within GFF315 at 336.206 kb on + strand, within GFF315 at 336.206 kb on + strand, within GFF315 at 336.207 kb on - strand, within GFF315 at 336.207 kb on - strand, within GFF315 at 336.207 kb on - strand, within GFF315 at 336.207 kb on - strand, within GFF315 at 336.210 kb on + strand at 336.211 kb on - strand at 336.211 kb on - strand at 336.211 kb on - strand at 336.211 kb on - strand at 336.230 kb on + strand at 336.230 kb on + strand at 336.230 kb on + strand at 336.231 kb on - strand at 336.231 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 334,743 - -1.6 334,780 + -0.5 334,780 + -0.1 334,780 + +0.3 334,780 + -0.2 334,780 + -1.3 334,780 + -0.3 334,780 + -0.7 334,781 - -1.6 334,781 - -0.6 334,785 + -1.3 334,785 + -1.0 334,785 + +0.3 334,785 + +0.6 334,791 + -0.3 334,791 + -0.4 334,791 + +1.0 334,798 + -0.0 334,798 + -1.3 334,798 + -0.4 334,802 + -0.2 334,802 + -0.9 334,806 + -1.6 334,806 + -1.2 334,806 + -1.0 334,832 + -1.6 334,833 - -1.8 334,841 + +0.6 334,841 + -1.1 334,843 + -1.0 334,860 + -0.3 334,950 + GFF313 0.17 -0.3 334,959 + GFF313 0.18 -1.0 335,017 + GFF313 0.30 +0.5 335,017 + GFF313 0.30 -1.8 335,097 + GFF313 0.47 -1.3 335,188 + GFF313 0.66 -0.0 335,339 + +1.3 335,339 + -0.0 335,339 + -0.9 335,339 + -1.0 335,339 + -0.5 335,339 + -0.6 335,339 + -0.1 335,344 + -0.2 335,344 + -0.0 335,351 - -1.2 335,395 + -0.0 335,395 + -1.6 335,395 + -1.3 335,404 - -1.3 335,404 - +0.4 335,454 + -0.2 335,454 + -0.6 335,454 + -0.6 335,454 + -0.0 335,454 + -0.5 335,454 + +0.1 335,455 - -1.8 335,455 - -1.0 335,458 + GFF314 0.10 -1.1 335,458 + GFF314 0.10 -0.0 335,458 + GFF314 0.10 -0.1 335,458 + GFF314 0.10 -0.6 335,459 - GFF314 0.11 -2.3 335,459 - GFF314 0.11 +0.6 335,459 - GFF314 0.11 -1.0 335,530 + GFF314 0.26 -1.0 335,530 + GFF314 0.26 -1.9 335,530 + GFF314 0.26 -2.0 335,530 + GFF314 0.26 -1.3 335,530 + GFF314 0.26 -0.2 335,531 - GFF314 0.26 -1.6 335,531 - GFF314 0.26 -0.7 335,547 + GFF314 0.30 -1.3 335,563 + GFF314 0.33 -0.2 335,564 - GFF314 0.34 -0.3 335,576 + GFF314 0.36 -0.6 335,576 + GFF314 0.36 -0.5 335,682 + GFF314 0.59 -0.6 335,718 + GFF314 0.67 +0.6 335,809 + GFF314 0.87 +0.6 335,816 + GFF314 0.89 -0.4 335,816 + GFF314 0.89 -0.0 335,816 + GFF314 0.89 +0.2 335,816 + GFF314 0.89 -0.2 335,816 + GFF314 0.89 -0.6 335,816 + GFF314 0.89 -1.0 335,817 - GFF314 0.89 -1.4 335,817 - GFF314 0.89 -1.0 335,818 + GFF314 0.89 +1.0 335,818 + GFF314 0.89 +0.4 335,818 + GFF314 0.89 -0.5 335,818 + GFF314 0.89 +0.2 335,818 + GFF314 0.89 -0.4 335,818 + GFF314 0.89 -0.0 335,818 + GFF314 0.89 -0.6 335,818 + GFF314 0.89 +0.3 335,818 + GFF314 0.89 +0.3 335,818 + GFF314 0.89 -0.6 335,819 - GFF314 0.89 -0.4 335,819 - GFF314 0.89 -0.6 335,819 - GFF314 0.89 -0.4 335,819 - GFF314 0.89 +1.0 335,819 - GFF314 0.89 -1.0 335,819 - GFF314 0.89 -0.9 335,819 - GFF314 0.89 +0.1 335,819 - GFF314 0.89 -1.0 335,819 - GFF314 0.89 -0.0 335,835 + -1.3 335,906 + -1.0 335,931 + -1.3 335,931 + +0.1 335,931 + -2.7 335,932 - -0.7 335,932 - -0.2 335,932 - -0.6 335,932 - -0.0 336,007 + GFF315 0.25 +0.6 336,053 + GFF315 0.40 -1.1 336,061 + GFF315 0.42 -1.0 336,100 + GFF315 0.55 +0.4 336,100 + GFF315 0.55 +0.3 336,101 - GFF315 0.55 -0.3 336,167 + GFF315 0.77 +0.5 336,185 + GFF315 0.83 -1.0 336,185 + GFF315 0.83 -0.0 336,186 - GFF315 0.83 -1.3 336,186 - GFF315 0.83 -1.9 336,206 + GFF315 0.89 +0.9 336,206 + GFF315 0.89 -1.0 336,207 - GFF315 0.90 -1.3 336,207 - GFF315 0.90 -0.2 336,207 - GFF315 0.90 -2.6 336,207 - GFF315 0.90 -0.6 336,210 + +1.1 336,211 - -0.8 336,211 - -1.3 336,211 - -0.5 336,211 - -0.8 336,230 + -1.3 336,230 + +0.4 336,230 + -0.3 336,231 - +0.3 336,231 - +0.2
Or see this region's nucleotide sequence