Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2838 and GFF2839 are separated by 157 nucleotides GFF2839 and GFF2840 are separated by 89 nucleotides GFF2840 and GFF2841 are separated by 88 nucleotides
GFF2838 - hypothetical protein, at 74,324 to 75,463
GFF2838
GFF2839 - L-threonine dehydratase biosynthetic IlvA, at 75,621 to 77,132
GFF2839
GFF2840 - Ribose-5-phosphate isomerase A, at 77,222 to 77,890
GFF2840
GFF2841 - Phosphate-specific transport system accessory protein PhoU, at 77,979 to 78,683
GFF2841
Position (kb) 75
76
77
78 Strain fitness (log2 ratio) -2
-1
0
1 at 74.629 kb on - strand, within GFF2838 at 74.649 kb on - strand, within GFF2838 at 74.657 kb on + strand, within GFF2838 at 74.658 kb on - strand, within GFF2838 at 74.658 kb on - strand, within GFF2838 at 74.658 kb on - strand, within GFF2838 at 74.665 kb on + strand, within GFF2838 at 74.666 kb on - strand, within GFF2838 at 74.666 kb on - strand, within GFF2838 at 74.681 kb on - strand, within GFF2838 at 74.686 kb on + strand, within GFF2838 at 74.687 kb on - strand, within GFF2838 at 74.687 kb on - strand, within GFF2838 at 74.718 kb on + strand, within GFF2838 at 74.718 kb on + strand, within GFF2838 at 74.718 kb on + strand, within GFF2838 at 74.718 kb on + strand, within GFF2838 at 74.719 kb on - strand, within GFF2838 at 74.719 kb on - strand, within GFF2838 at 74.719 kb on - strand, within GFF2838 at 74.719 kb on - strand, within GFF2838 at 74.719 kb on - strand, within GFF2838 at 74.722 kb on + strand, within GFF2838 at 74.722 kb on + strand, within GFF2838 at 74.723 kb on - strand, within GFF2838 at 74.723 kb on - strand, within GFF2838 at 74.766 kb on + strand, within GFF2838 at 74.817 kb on - strand, within GFF2838 at 74.817 kb on - strand, within GFF2838 at 74.817 kb on - strand, within GFF2838 at 74.817 kb on - strand, within GFF2838 at 74.828 kb on - strand, within GFF2838 at 74.828 kb on - strand, within GFF2838 at 74.845 kb on + strand, within GFF2838 at 75.028 kb on + strand, within GFF2838 at 75.028 kb on + strand, within GFF2838 at 75.034 kb on + strand, within GFF2838 at 75.034 kb on + strand, within GFF2838 at 75.034 kb on + strand, within GFF2838 at 75.057 kb on + strand, within GFF2838 at 75.057 kb on + strand, within GFF2838 at 75.058 kb on - strand, within GFF2838 at 75.058 kb on - strand, within GFF2838 at 75.058 kb on - strand, within GFF2838 at 75.058 kb on - strand, within GFF2838 at 75.058 kb on - strand, within GFF2838 at 75.058 kb on - strand, within GFF2838 at 75.058 kb on - strand, within GFF2838 at 75.061 kb on + strand, within GFF2838 at 75.062 kb on - strand, within GFF2838 at 75.062 kb on - strand, within GFF2838 at 75.062 kb on - strand, within GFF2838 at 75.131 kb on - strand, within GFF2838 at 75.297 kb on + strand, within GFF2838 at 75.297 kb on + strand, within GFF2838 at 75.297 kb on + strand, within GFF2838 at 75.297 kb on + strand, within GFF2838 at 75.297 kb on + strand, within GFF2838 at 75.297 kb on + strand, within GFF2838 at 75.297 kb on + strand, within GFF2838 at 75.297 kb on + strand, within GFF2838 at 75.298 kb on - strand, within GFF2838 at 75.298 kb on - strand, within GFF2838 at 75.298 kb on - strand, within GFF2838 at 75.298 kb on - strand, within GFF2838 at 75.385 kb on + strand at 75.386 kb on - strand at 75.471 kb on + strand at 75.471 kb on + strand at 75.472 kb on - strand at 75.472 kb on - strand at 75.482 kb on + strand at 75.482 kb on + strand at 75.483 kb on - strand at 75.483 kb on - strand at 75.483 kb on - strand at 75.486 kb on - strand at 75.486 kb on - strand at 75.486 kb on - strand at 75.486 kb on - strand at 75.490 kb on - strand at 75.490 kb on - strand at 75.490 kb on - strand at 75.490 kb on - strand at 75.505 kb on - strand at 75.620 kb on - strand at 75.628 kb on - strand at 75.640 kb on + strand at 75.640 kb on + strand at 75.641 kb on - strand at 75.641 kb on - strand at 75.650 kb on + strand at 75.651 kb on - strand at 75.651 kb on - strand at 75.651 kb on - strand at 75.651 kb on - strand at 75.651 kb on - strand at 75.651 kb on - strand at 75.668 kb on - strand at 75.706 kb on - strand at 75.767 kb on + strand at 75.767 kb on + strand at 75.767 kb on + strand at 75.768 kb on - strand at 75.773 kb on - strand, within GFF2839 at 75.860 kb on - strand, within GFF2839 at 75.860 kb on - strand, within GFF2839 at 75.915 kb on + strand, within GFF2839 at 75.915 kb on + strand, within GFF2839 at 75.916 kb on - strand, within GFF2839 at 75.944 kb on + strand, within GFF2839 at 75.945 kb on - strand, within GFF2839 at 75.984 kb on - strand, within GFF2839 at 76.028 kb on + strand, within GFF2839 at 76.029 kb on - strand, within GFF2839 at 76.058 kb on - strand, within GFF2839 at 76.073 kb on + strand, within GFF2839 at 76.073 kb on + strand, within GFF2839 at 76.073 kb on + strand, within GFF2839 at 76.073 kb on + strand, within GFF2839 at 76.073 kb on + strand, within GFF2839 at 76.074 kb on - strand, within GFF2839 at 76.074 kb on - strand, within GFF2839 at 76.107 kb on - strand, within GFF2839 at 76.107 kb on - strand, within GFF2839 at 76.242 kb on - strand, within GFF2839 at 76.267 kb on + strand, within GFF2839 at 76.267 kb on + strand, within GFF2839 at 76.267 kb on + strand, within GFF2839 at 76.268 kb on - strand, within GFF2839 at 76.268 kb on - strand, within GFF2839 at 76.268 kb on - strand, within GFF2839 at 76.365 kb on - strand, within GFF2839 at 76.390 kb on + strand, within GFF2839 at 76.390 kb on + strand, within GFF2839 at 76.390 kb on + strand, within GFF2839 at 76.391 kb on - strand, within GFF2839 at 76.391 kb on - strand, within GFF2839 at 76.391 kb on - strand, within GFF2839 at 76.391 kb on - strand, within GFF2839 at 76.391 kb on - strand, within GFF2839 at 76.391 kb on - strand, within GFF2839 at 76.391 kb on - strand, within GFF2839 at 76.391 kb on - strand, within GFF2839 at 76.391 kb on - strand, within GFF2839 at 76.412 kb on + strand, within GFF2839 at 76.413 kb on - strand, within GFF2839 at 76.413 kb on - strand, within GFF2839 at 76.413 kb on - strand, within GFF2839 at 76.413 kb on - strand, within GFF2839 at 76.413 kb on - strand, within GFF2839 at 76.413 kb on - strand, within GFF2839 at 76.697 kb on - strand, within GFF2839 at 76.731 kb on + strand, within GFF2839 at 76.732 kb on - strand, within GFF2839 at 76.750 kb on + strand, within GFF2839 at 76.751 kb on - strand, within GFF2839 at 76.751 kb on - strand, within GFF2839 at 76.751 kb on - strand, within GFF2839 at 76.751 kb on - strand, within GFF2839 at 76.751 kb on - strand, within GFF2839 at 76.762 kb on + strand, within GFF2839 at 76.762 kb on + strand, within GFF2839 at 76.763 kb on - strand, within GFF2839 at 76.782 kb on + strand, within GFF2839 at 76.783 kb on - strand, within GFF2839 at 76.783 kb on - strand, within GFF2839 at 76.783 kb on - strand, within GFF2839 at 76.783 kb on - strand, within GFF2839 at 76.964 kb on + strand, within GFF2839 at 76.965 kb on - strand, within GFF2839 at 76.965 kb on - strand, within GFF2839 at 76.966 kb on + strand, within GFF2839 at 76.966 kb on + strand, within GFF2839 at 76.966 kb on + strand, within GFF2839 at 76.967 kb on - strand, within GFF2839 at 76.967 kb on - strand, within GFF2839 at 76.967 kb on - strand, within GFF2839 at 76.992 kb on + strand at 77.003 kb on + strand at 77.004 kb on - strand at 77.072 kb on + strand at 77.073 kb on - strand at 77.073 kb on - strand at 77.073 kb on - strand at 77.090 kb on - strand at 77.090 kb on - strand at 77.090 kb on - strand at 77.137 kb on + strand at 77.138 kb on - strand at 77.150 kb on + strand at 77.150 kb on + strand at 77.151 kb on - strand at 77.171 kb on + strand at 77.171 kb on + strand at 77.171 kb on + strand at 77.172 kb on - strand at 77.172 kb on - strand at 77.172 kb on - strand at 77.190 kb on + strand at 77.190 kb on + strand at 77.190 kb on + strand at 77.191 kb on - strand at 77.191 kb on - strand at 77.191 kb on - strand at 77.873 kb on - strand at 77.873 kb on - strand at 77.888 kb on + strand at 77.888 kb on + strand at 77.888 kb on + strand at 77.916 kb on - strand at 77.920 kb on + strand at 77.920 kb on + strand at 77.920 kb on + strand at 77.920 kb on + strand at 77.920 kb on + strand at 77.920 kb on + strand at 77.920 kb on + strand at 77.920 kb on + strand at 77.920 kb on + strand at 77.931 kb on + strand at 77.931 kb on + strand at 77.931 kb on + strand at 77.942 kb on + strand at 77.960 kb on + strand at 77.960 kb on + strand at 77.960 kb on + strand at 77.960 kb on + strand at 77.960 kb on + strand at 77.964 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 74,629 - GFF2838 0.27 -0.2 74,649 - GFF2838 0.29 -0.8 74,657 + GFF2838 0.29 -0.6 74,658 - GFF2838 0.29 -1.5 74,658 - GFF2838 0.29 -0.5 74,658 - GFF2838 0.29 -0.4 74,665 + GFF2838 0.30 -1.4 74,666 - GFF2838 0.30 +0.6 74,666 - GFF2838 0.30 -0.0 74,681 - GFF2838 0.31 -1.0 74,686 + GFF2838 0.32 -1.3 74,687 - GFF2838 0.32 -0.0 74,687 - GFF2838 0.32 -1.0 74,718 + GFF2838 0.35 -1.0 74,718 + GFF2838 0.35 +0.1 74,718 + GFF2838 0.35 -0.2 74,718 + GFF2838 0.35 +0.4 74,719 - GFF2838 0.35 -0.6 74,719 - GFF2838 0.35 -0.4 74,719 - GFF2838 0.35 +0.6 74,719 - GFF2838 0.35 +0.1 74,719 - GFF2838 0.35 +0.4 74,722 + GFF2838 0.35 -0.9 74,722 + GFF2838 0.35 -0.5 74,723 - GFF2838 0.35 +0.5 74,723 - GFF2838 0.35 -0.8 74,766 + GFF2838 0.39 -0.2 74,817 - GFF2838 0.43 +0.4 74,817 - GFF2838 0.43 -0.7 74,817 - GFF2838 0.43 -0.8 74,817 - GFF2838 0.43 -0.0 74,828 - GFF2838 0.44 -0.8 74,828 - GFF2838 0.44 -1.6 74,845 + GFF2838 0.46 -1.4 75,028 + GFF2838 0.62 +0.2 75,028 + GFF2838 0.62 +0.2 75,034 + GFF2838 0.62 -0.0 75,034 + GFF2838 0.62 -0.0 75,034 + GFF2838 0.62 +0.1 75,057 + GFF2838 0.64 -1.0 75,057 + GFF2838 0.64 -0.7 75,058 - GFF2838 0.64 -1.5 75,058 - GFF2838 0.64 +1.0 75,058 - GFF2838 0.64 +1.0 75,058 - GFF2838 0.64 -0.3 75,058 - GFF2838 0.64 +0.2 75,058 - GFF2838 0.64 -1.0 75,058 - GFF2838 0.64 -0.0 75,061 + GFF2838 0.65 -1.0 75,062 - GFF2838 0.65 -1.0 75,062 - GFF2838 0.65 -0.8 75,062 - GFF2838 0.65 -0.9 75,131 - GFF2838 0.71 -1.4 75,297 + GFF2838 0.85 -0.1 75,297 + GFF2838 0.85 -1.4 75,297 + GFF2838 0.85 +1.5 75,297 + GFF2838 0.85 +0.2 75,297 + GFF2838 0.85 -0.0 75,297 + GFF2838 0.85 -1.4 75,297 + GFF2838 0.85 -1.0 75,297 + GFF2838 0.85 +1.0 75,298 - GFF2838 0.85 -0.6 75,298 - GFF2838 0.85 -0.5 75,298 - GFF2838 0.85 -1.4 75,298 - GFF2838 0.85 +1.0 75,385 + -1.4 75,386 - -0.7 75,471 + +1.3 75,471 + +0.8 75,472 - -0.0 75,472 - +0.8 75,482 + -0.0 75,482 + +0.2 75,483 - +0.6 75,483 - -1.2 75,483 - -0.6 75,486 - +0.2 75,486 - -1.6 75,486 - -0.4 75,486 - -1.0 75,490 - +0.4 75,490 - -0.7 75,490 - +0.2 75,490 - -0.6 75,505 - +0.2 75,620 - -0.8 75,628 - -0.1 75,640 + +1.0 75,640 + -0.7 75,641 - -0.1 75,641 - -1.4 75,650 + -1.0 75,651 - -0.7 75,651 - +1.3 75,651 - -0.8 75,651 - -0.0 75,651 - +0.0 75,651 - +0.5 75,668 - +0.5 75,706 - -1.1 75,767 + -1.8 75,767 + +0.3 75,767 + -0.0 75,768 - +0.1 75,773 - GFF2839 0.10 -0.6 75,860 - GFF2839 0.16 -0.3 75,860 - GFF2839 0.16 -1.8 75,915 + GFF2839 0.19 -0.8 75,915 + GFF2839 0.19 -0.0 75,916 - GFF2839 0.20 -1.0 75,944 + GFF2839 0.21 -1.4 75,945 - GFF2839 0.21 -1.0 75,984 - GFF2839 0.24 +0.3 76,028 + GFF2839 0.27 -1.0 76,029 - GFF2839 0.27 -0.0 76,058 - GFF2839 0.29 -1.1 76,073 + GFF2839 0.30 -2.2 76,073 + GFF2839 0.30 -0.4 76,073 + GFF2839 0.30 -0.5 76,073 + GFF2839 0.30 -0.3 76,073 + GFF2839 0.30 +1.3 76,074 - GFF2839 0.30 +0.7 76,074 - GFF2839 0.30 -0.5 76,107 - GFF2839 0.32 +1.0 76,107 - GFF2839 0.32 +0.7 76,242 - GFF2839 0.41 -1.8 76,267 + GFF2839 0.43 -0.9 76,267 + GFF2839 0.43 -1.4 76,267 + GFF2839 0.43 -1.6 76,268 - GFF2839 0.43 -1.4 76,268 - GFF2839 0.43 -0.8 76,268 - GFF2839 0.43 -1.0 76,365 - GFF2839 0.49 -0.9 76,390 + GFF2839 0.51 -2.0 76,390 + GFF2839 0.51 -1.7 76,390 + GFF2839 0.51 -0.5 76,391 - GFF2839 0.51 -0.9 76,391 - GFF2839 0.51 -1.8 76,391 - GFF2839 0.51 +0.0 76,391 - GFF2839 0.51 -1.2 76,391 - GFF2839 0.51 -1.4 76,391 - GFF2839 0.51 -0.5 76,391 - GFF2839 0.51 -0.6 76,391 - GFF2839 0.51 -2.7 76,391 - GFF2839 0.51 -1.4 76,412 + GFF2839 0.52 -1.0 76,413 - GFF2839 0.52 +0.7 76,413 - GFF2839 0.52 -1.5 76,413 - GFF2839 0.52 -2.0 76,413 - GFF2839 0.52 -0.0 76,413 - GFF2839 0.52 -2.0 76,413 - GFF2839 0.52 -1.0 76,697 - GFF2839 0.71 -0.0 76,731 + GFF2839 0.73 +1.0 76,732 - GFF2839 0.73 -0.8 76,750 + GFF2839 0.75 -0.9 76,751 - GFF2839 0.75 -2.2 76,751 - GFF2839 0.75 -1.6 76,751 - GFF2839 0.75 -1.7 76,751 - GFF2839 0.75 -2.4 76,751 - GFF2839 0.75 -1.6 76,762 + GFF2839 0.75 +0.2 76,762 + GFF2839 0.75 -0.0 76,763 - GFF2839 0.76 -0.6 76,782 + GFF2839 0.77 -0.4 76,783 - GFF2839 0.77 -1.4 76,783 - GFF2839 0.77 -0.8 76,783 - GFF2839 0.77 -1.6 76,783 - GFF2839 0.77 +0.2 76,964 + GFF2839 0.89 -1.6 76,965 - GFF2839 0.89 -1.4 76,965 - GFF2839 0.89 -2.2 76,966 + GFF2839 0.89 -1.5 76,966 + GFF2839 0.89 -0.9 76,966 + GFF2839 0.89 -0.0 76,967 - GFF2839 0.89 -1.1 76,967 - GFF2839 0.89 -1.4 76,967 - GFF2839 0.89 -1.1 76,992 + +0.2 77,003 + -0.6 77,004 - -0.6 77,072 + -0.4 77,073 - +0.2 77,073 - -1.6 77,073 - -0.8 77,090 - -0.7 77,090 - -1.2 77,090 - +0.7 77,137 + -0.6 77,138 - +1.4 77,150 + -0.0 77,150 + +0.4 77,151 - -1.1 77,171 + -0.6 77,171 + -0.6 77,171 + -0.4 77,172 - -0.2 77,172 - +0.2 77,172 - +0.4 77,190 + -0.4 77,190 + +0.4 77,190 + +0.5 77,191 - -0.3 77,191 - +0.0 77,191 - -0.3 77,873 - +0.7 77,873 - -1.5 77,888 + -0.4 77,888 + +1.0 77,888 + -1.0 77,916 - +0.2 77,920 + -0.2 77,920 + -0.4 77,920 + -0.5 77,920 + -0.3 77,920 + -0.8 77,920 + -1.4 77,920 + -2.0 77,920 + +0.5 77,920 + -0.0 77,931 + -2.5 77,931 + -0.0 77,931 + -1.0 77,942 + -0.4 77,960 + +0.2 77,960 + -0.3 77,960 + -0.4 77,960 + +0.8 77,960 + +0.3 77,964 + -1.3
Or see this region's nucleotide sequence