Strain Fitness in Methylophilus sp. DMC18 around GFF278

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF277 and GFF278 are separated by 10 nucleotidesGFF278 and GFF279 overlap by 4 nucleotidesGFF279 and GFF280 are separated by 21 nucleotides GFF277 - Isocitrate dehydrogenase [NADP], at 294,814 to 296,052 GFF277 GFF278 - Ribosomal large subunit pseudouridine synthase E, at 296,063 to 296,614 GFF278 GFF279 - hypothetical protein, at 296,611 to 297,315 GFF279 GFF280 - Lipid A biosynthesis lauroyltransferase, at 297,337 to 298,212 GFF280 Position (kb) 296 297Strain fitness (log2 ratio) -2 -1 0 1at 296.142 kb on - strand, within GFF278at 296.204 kb on - strand, within GFF278at 296.204 kb on - strand, within GFF278at 296.204 kb on - strand, within GFF278at 296.204 kb on - strand, within GFF278at 296.204 kb on - strand, within GFF278at 296.204 kb on - strand, within GFF278at 296.226 kb on + strand, within GFF278at 296.226 kb on + strand, within GFF278at 296.226 kb on + strand, within GFF278at 296.226 kb on + strand, within GFF278at 296.226 kb on + strand, within GFF278at 296.227 kb on - strand, within GFF278at 296.227 kb on - strand, within GFF278at 296.227 kb on - strand, within GFF278at 296.234 kb on - strand, within GFF278at 296.270 kb on + strand, within GFF278at 296.297 kb on - strand, within GFF278at 296.394 kb on + strand, within GFF278at 296.484 kb on + strand, within GFF278at 296.550 kb on - strand, within GFF278at 296.550 kb on - strand, within GFF278at 296.579 kb on + strandat 296.594 kb on + strandat 296.594 kb on + strandat 296.595 kb on - strandat 296.595 kb on - strandat 296.595 kb on - strandat 296.595 kb on - strandat 296.595 kb on - strandat 296.595 kb on - strandat 296.595 kb on - strandat 296.596 kb on + strandat 296.596 kb on + strandat 296.596 kb on + strandat 296.596 kb on + strandat 296.596 kb on + strandat 296.597 kb on - strandat 296.597 kb on - strandat 296.597 kb on - strandat 296.604 kb on + strandat 296.604 kb on + strandat 296.604 kb on + strandat 296.604 kb on + strandat 296.605 kb on - strandat 296.628 kb on - strandat 296.659 kb on + strandat 296.715 kb on + strand, within GFF279at 296.749 kb on + strand, within GFF279at 296.749 kb on + strand, within GFF279at 296.749 kb on + strand, within GFF279at 296.749 kb on + strand, within GFF279at 296.749 kb on + strand, within GFF279at 296.749 kb on + strand, within GFF279at 296.749 kb on + strand, within GFF279at 296.749 kb on + strand, within GFF279at 296.749 kb on + strand, within GFF279at 296.750 kb on - strand, within GFF279at 296.750 kb on - strand, within GFF279at 296.750 kb on - strand, within GFF279at 296.750 kb on - strand, within GFF279at 296.750 kb on - strand, within GFF279at 296.750 kb on - strand, within GFF279at 296.750 kb on - strand, within GFF279at 296.751 kb on + strand, within GFF279at 296.751 kb on + strand, within GFF279at 296.752 kb on - strand, within GFF279at 296.752 kb on - strand, within GFF279at 296.752 kb on - strand, within GFF279at 296.752 kb on - strand, within GFF279at 296.752 kb on - strand, within GFF279at 296.816 kb on + strand, within GFF279at 296.817 kb on + strand, within GFF279at 296.885 kb on + strand, within GFF279at 296.936 kb on + strand, within GFF279at 297.065 kb on + strand, within GFF279at 297.076 kb on + strand, within GFF279at 297.094 kb on + strand, within GFF279at 297.094 kb on + strand, within GFF279at 297.094 kb on + strand, within GFF279at 297.094 kb on + strand, within GFF279at 297.094 kb on + strand, within GFF279at 297.094 kb on + strand, within GFF279at 297.094 kb on + strand, within GFF279at 297.094 kb on + strand, within GFF279at 297.094 kb on + strand, within GFF279at 297.094 kb on + strand, within GFF279at 297.094 kb on + strand, within GFF279at 297.094 kb on + strand, within GFF279at 297.094 kb on + strand, within GFF279at 297.094 kb on + strand, within GFF279at 297.094 kb on + strand, within GFF279at 297.095 kb on - strand, within GFF279at 297.095 kb on - strand, within GFF279at 297.095 kb on - strand, within GFF279at 297.095 kb on - strand, within GFF279at 297.095 kb on - strand, within GFF279at 297.095 kb on - strand, within GFF279at 297.095 kb on - strand, within GFF279at 297.184 kb on - strand, within GFF279at 297.286 kb on + strandat 297.286 kb on + strandat 297.286 kb on + strandat 297.286 kb on + strandat 297.287 kb on - strandat 297.287 kb on - strandat 297.287 kb on - strandat 297.287 kb on - strandat 297.288 kb on + strandat 297.338 kb on + strandat 297.367 kb on - strandat 297.390 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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296,142 - GFF278 0.14 -1.3
296,204 - GFF278 0.26 -0.6
296,204 - GFF278 0.26 -0.4
296,204 - GFF278 0.26 -0.8
296,204 - GFF278 0.26 -1.4
296,204 - GFF278 0.26 -1.0
296,204 - GFF278 0.26 +1.2
296,226 + GFF278 0.30 -0.8
296,226 + GFF278 0.30 -0.7
296,226 + GFF278 0.30 -0.0
296,226 + GFF278 0.30 -1.3
296,226 + GFF278 0.30 -1.6
296,227 - GFF278 0.30 +0.1
296,227 - GFF278 0.30 -0.6
296,227 - GFF278 0.30 -1.9
296,234 - GFF278 0.31 -0.0
296,270 + GFF278 0.38 -0.8
296,297 - GFF278 0.42 -0.0
296,394 + GFF278 0.60 -0.0
296,484 + GFF278 0.76 -1.0
296,550 - GFF278 0.88 -1.6
296,550 - GFF278 0.88 -2.0
296,579 + +0.2
296,594 + -1.2
296,594 + -2.2
296,595 - +0.5
296,595 - -0.9
296,595 - -0.5
296,595 - +0.3
296,595 - +0.6
296,595 - -0.3
296,595 - -2.0
296,596 + +1.0
296,596 + -0.6
296,596 + -1.3
296,596 + -1.0
296,596 + -1.0
296,597 - +1.0
296,597 - -0.2
296,597 - -0.7
296,604 + +1.2
296,604 + -0.9
296,604 + -0.0
296,604 + -2.3
296,605 - -1.5
296,628 - +0.3
296,659 + -0.6
296,715 + GFF279 0.15 -0.7
296,749 + GFF279 0.20 -0.9
296,749 + GFF279 0.20 -0.9
296,749 + GFF279 0.20 -0.2
296,749 + GFF279 0.20 -2.0
296,749 + GFF279 0.20 -0.8
296,749 + GFF279 0.20 +0.3
296,749 + GFF279 0.20 -0.0
296,749 + GFF279 0.20 +0.4
296,749 + GFF279 0.20 +0.3
296,750 - GFF279 0.20 +0.8
296,750 - GFF279 0.20 +0.2
296,750 - GFF279 0.20 +0.4
296,750 - GFF279 0.20 -0.0
296,750 - GFF279 0.20 +0.5
296,750 - GFF279 0.20 -1.0
296,750 - GFF279 0.20 +0.3
296,751 + GFF279 0.20 -1.2
296,751 + GFF279 0.20 +1.5
296,752 - GFF279 0.20 +0.2
296,752 - GFF279 0.20 +0.8
296,752 - GFF279 0.20 -1.3
296,752 - GFF279 0.20 +0.6
296,752 - GFF279 0.20 +0.1
296,816 + GFF279 0.29 -0.0
296,817 + GFF279 0.29 -1.0
296,885 + GFF279 0.39 -1.0
296,936 + GFF279 0.46 +0.7
297,065 + GFF279 0.64 -1.8
297,076 + GFF279 0.66 -1.3
297,094 + GFF279 0.69 -1.0
297,094 + GFF279 0.69 +1.0
297,094 + GFF279 0.69 +0.6
297,094 + GFF279 0.69 -0.1
297,094 + GFF279 0.69 -0.4
297,094 + GFF279 0.69 -0.6
297,094 + GFF279 0.69 -0.8
297,094 + GFF279 0.69 +0.6
297,094 + GFF279 0.69 -1.0
297,094 + GFF279 0.69 -0.0
297,094 + GFF279 0.69 -0.6
297,094 + GFF279 0.69 -0.3
297,094 + GFF279 0.69 -2.7
297,094 + GFF279 0.69 -1.0
297,094 + GFF279 0.69 -0.2
297,095 - GFF279 0.69 -0.0
297,095 - GFF279 0.69 +0.3
297,095 - GFF279 0.69 +0.6
297,095 - GFF279 0.69 -0.6
297,095 - GFF279 0.69 -0.3
297,095 - GFF279 0.69 -1.2
297,095 - GFF279 0.69 -0.7
297,184 - GFF279 0.81 -0.0
297,286 + -0.3
297,286 + +1.3
297,286 + -1.3
297,286 + -1.0
297,287 - -1.3
297,287 - -1.0
297,287 - -0.6
297,287 - -0.0
297,288 + -0.3
297,338 + -0.5
297,367 - -0.3
297,390 - +1.2

Or see this region's nucleotide sequence