Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2775 and GFF2776 are separated by 8 nucleotides GFF2776 and GFF2777 are separated by 6 nucleotides GFF2777 and GFF2778 are separated by 45 nucleotides
GFF2775 - Lipopolysaccharide export system protein LptA, at 5,149 to 5,763
GFF2775
GFF2776 - Lipopolysaccharide export system ATP-binding protein LptB, at 5,772 to 6,515
GFF2776
GFF2777 - RNA polymerase sigma-54 factor, at 6,522 to 8,066
GFF2777
GFF2778 - Tyrosine--tRNA ligase, at 8,112 to 9,350
GFF2778
Position (kb) 6
7
8
9 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5.761 kb on + strand at 6.513 kb on + strand at 6.546 kb on - strand at 6.721 kb on + strand, within GFF2777 at 6.722 kb on - strand, within GFF2777 at 7.015 kb on + strand, within GFF2777 at 7.118 kb on - strand, within GFF2777 at 7.199 kb on - strand, within GFF2777 at 7.219 kb on + strand, within GFF2777 at 7.504 kb on + strand, within GFF2777 at 7.545 kb on + strand, within GFF2777 at 7.545 kb on + strand, within GFF2777 at 7.546 kb on - strand, within GFF2777 at 7.546 kb on - strand, within GFF2777 at 7.546 kb on - strand, within GFF2777 at 7.625 kb on + strand, within GFF2777 at 7.678 kb on + strand, within GFF2777 at 7.796 kb on + strand, within GFF2777 at 7.796 kb on + strand, within GFF2777 at 7.796 kb on + strand, within GFF2777 at 7.796 kb on + strand, within GFF2777 at 7.796 kb on + strand, within GFF2777 at 7.796 kb on + strand, within GFF2777 at 7.797 kb on - strand, within GFF2777 at 7.797 kb on - strand, within GFF2777 at 7.797 kb on - strand, within GFF2777 at 7.800 kb on + strand, within GFF2777 at 7.800 kb on + strand, within GFF2777 at 7.800 kb on + strand, within GFF2777 at 7.800 kb on + strand, within GFF2777 at 7.800 kb on + strand, within GFF2777 at 7.800 kb on + strand, within GFF2777 at 7.801 kb on - strand, within GFF2777 at 7.801 kb on - strand, within GFF2777 at 7.801 kb on - strand, within GFF2777 at 7.801 kb on - strand, within GFF2777 at 7.802 kb on + strand, within GFF2777 at 7.802 kb on + strand, within GFF2777 at 7.803 kb on - strand, within GFF2777 at 7.836 kb on + strand, within GFF2777 at 7.836 kb on + strand, within GFF2777 at 7.986 kb on - strand at 8.016 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 5,761 + -1.0 6,513 + -0.0 6,546 - -1.9 6,721 + GFF2777 0.13 -1.0 6,722 - GFF2777 0.13 -1.4 7,015 + GFF2777 0.32 -1.0 7,118 - GFF2777 0.39 -1.0 7,199 - GFF2777 0.44 -1.8 7,219 + GFF2777 0.45 -1.8 7,504 + GFF2777 0.64 -1.0 7,545 + GFF2777 0.66 -1.6 7,545 + GFF2777 0.66 -0.6 7,546 - GFF2777 0.66 -1.4 7,546 - GFF2777 0.66 -1.0 7,546 - GFF2777 0.66 -1.0 7,625 + GFF2777 0.71 -1.8 7,678 + GFF2777 0.75 -1.0 7,796 + GFF2777 0.82 -1.6 7,796 + GFF2777 0.82 -2.6 7,796 + GFF2777 0.82 -3.0 7,796 + GFF2777 0.82 -2.2 7,796 + GFF2777 0.82 -1.0 7,796 + GFF2777 0.82 -1.0 7,797 - GFF2777 0.83 -2.7 7,797 - GFF2777 0.83 -1.4 7,797 - GFF2777 0.83 -1.0 7,800 + GFF2777 0.83 -1.0 7,800 + GFF2777 0.83 -2.8 7,800 + GFF2777 0.83 -1.4 7,800 + GFF2777 0.83 -2.5 7,800 + GFF2777 0.83 -1.4 7,800 + GFF2777 0.83 -2.8 7,801 - GFF2777 0.83 -1.4 7,801 - GFF2777 0.83 -1.0 7,801 - GFF2777 0.83 -1.0 7,801 - GFF2777 0.83 -2.2 7,802 + GFF2777 0.83 -1.4 7,802 + GFF2777 0.83 -2.2 7,803 - GFF2777 0.83 -1.0 7,836 + GFF2777 0.85 -1.0 7,836 + GFF2777 0.85 -1.4 7,986 - -2.4 8,016 + -1.8
Or see this region's nucleotide sequence