Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2717 and GFF2718 are separated by 98 nucleotides GFF2718 and GFF2719 overlap by 4 nucleotides GFF2719 and GFF2720 are separated by 11 nucleotides
GFF2717 - hypothetical protein, at 122,244 to 123,377
GFF2717
GFF2718 - Phosphate regulon sensor protein PhoR, at 123,476 to 124,774
GFF2718
GFF2719 - hypothetical protein, at 124,771 to 125,514
GFF2719
GFF2720 - 50S ribosomal protein L16 3-hydroxylase, at 125,526 to 126,680
GFF2720
Position (kb) 123
124
125 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 122.478 kb on + strand, within GFF2717 at 122.481 kb on + strand, within GFF2717 at 122.482 kb on - strand, within GFF2717 at 122.482 kb on - strand, within GFF2717 at 122.492 kb on + strand, within GFF2717 at 122.492 kb on + strand, within GFF2717 at 122.493 kb on - strand, within GFF2717 at 122.543 kb on + strand, within GFF2717 at 122.543 kb on + strand, within GFF2717 at 122.657 kb on + strand, within GFF2717 at 122.657 kb on + strand, within GFF2717 at 122.657 kb on + strand, within GFF2717 at 122.657 kb on + strand, within GFF2717 at 122.658 kb on - strand, within GFF2717 at 122.658 kb on - strand, within GFF2717 at 122.658 kb on - strand, within GFF2717 at 122.666 kb on + strand, within GFF2717 at 122.667 kb on - strand, within GFF2717 at 122.739 kb on + strand, within GFF2717 at 122.745 kb on - strand, within GFF2717 at 122.836 kb on + strand, within GFF2717 at 122.836 kb on + strand, within GFF2717 at 122.837 kb on - strand, within GFF2717 at 122.837 kb on - strand, within GFF2717 at 122.837 kb on - strand, within GFF2717 at 122.837 kb on - strand, within GFF2717 at 122.837 kb on - strand, within GFF2717 at 122.837 kb on - strand, within GFF2717 at 122.867 kb on - strand, within GFF2717 at 122.981 kb on + strand, within GFF2717 at 122.981 kb on + strand, within GFF2717 at 122.982 kb on - strand, within GFF2717 at 122.982 kb on - strand, within GFF2717 at 123.001 kb on + strand, within GFF2717 at 123.027 kb on + strand, within GFF2717 at 123.027 kb on + strand, within GFF2717 at 123.028 kb on - strand, within GFF2717 at 123.028 kb on - strand, within GFF2717 at 123.062 kb on + strand, within GFF2717 at 123.062 kb on + strand, within GFF2717 at 123.062 kb on + strand, within GFF2717 at 123.062 kb on + strand, within GFF2717 at 123.063 kb on - strand, within GFF2717 at 123.072 kb on + strand, within GFF2717 at 123.072 kb on + strand, within GFF2717 at 123.072 kb on + strand, within GFF2717 at 123.073 kb on - strand, within GFF2717 at 123.073 kb on - strand, within GFF2717 at 123.073 kb on - strand, within GFF2717 at 123.129 kb on + strand, within GFF2717 at 123.129 kb on + strand, within GFF2717 at 123.129 kb on + strand, within GFF2717 at 123.129 kb on + strand, within GFF2717 at 123.130 kb on - strand, within GFF2717 at 123.130 kb on - strand, within GFF2717 at 123.183 kb on + strand, within GFF2717 at 123.183 kb on + strand, within GFF2717 at 123.184 kb on - strand, within GFF2717 at 123.206 kb on + strand, within GFF2717 at 123.210 kb on + strand, within GFF2717 at 123.211 kb on - strand, within GFF2717 at 123.241 kb on + strand, within GFF2717 at 123.242 kb on - strand, within GFF2717 at 123.252 kb on + strand, within GFF2717 at 123.253 kb on - strand, within GFF2717 at 123.321 kb on - strand at 123.346 kb on - strand at 123.401 kb on + strand at 123.401 kb on + strand at 123.401 kb on + strand at 123.401 kb on + strand at 123.401 kb on + strand at 123.402 kb on - strand at 123.402 kb on - strand at 123.402 kb on - strand at 123.442 kb on - strand at 123.442 kb on - strand at 123.457 kb on + strand at 123.458 kb on - strand at 123.458 kb on - strand at 123.578 kb on + strand at 123.578 kb on + strand at 123.578 kb on + strand at 123.578 kb on + strand at 123.579 kb on - strand at 123.579 kb on - strand at 123.582 kb on + strand at 123.582 kb on + strand at 123.582 kb on + strand at 123.583 kb on - strand at 123.583 kb on - strand at 123.583 kb on - strand at 123.583 kb on - strand at 123.583 kb on - strand at 123.583 kb on - strand at 123.583 kb on - strand at 123.599 kb on + strand at 123.615 kb on + strand, within GFF2718 at 123.615 kb on + strand, within GFF2718 at 123.615 kb on + strand, within GFF2718 at 123.616 kb on - strand, within GFF2718 at 123.616 kb on - strand, within GFF2718 at 123.616 kb on - strand, within GFF2718 at 123.616 kb on - strand, within GFF2718 at 123.624 kb on + strand, within GFF2718 at 123.625 kb on - strand, within GFF2718 at 123.635 kb on + strand, within GFF2718 at 123.636 kb on - strand, within GFF2718 at 123.636 kb on - strand, within GFF2718 at 123.650 kb on - strand, within GFF2718 at 123.714 kb on - strand, within GFF2718 at 123.753 kb on + strand, within GFF2718 at 123.754 kb on - strand, within GFF2718 at 123.754 kb on - strand, within GFF2718 at 123.754 kb on - strand, within GFF2718 at 123.826 kb on + strand, within GFF2718 at 123.844 kb on + strand, within GFF2718 at 123.844 kb on + strand, within GFF2718 at 123.844 kb on + strand, within GFF2718 at 123.845 kb on - strand, within GFF2718 at 123.912 kb on + strand, within GFF2718 at 123.912 kb on + strand, within GFF2718 at 123.913 kb on - strand, within GFF2718 at 123.915 kb on + strand, within GFF2718 at 123.916 kb on - strand, within GFF2718 at 123.938 kb on + strand, within GFF2718 at 123.938 kb on + strand, within GFF2718 at 123.939 kb on - strand, within GFF2718 at 123.939 kb on - strand, within GFF2718 at 123.956 kb on + strand, within GFF2718 at 123.976 kb on + strand, within GFF2718 at 123.976 kb on + strand, within GFF2718 at 123.977 kb on - strand, within GFF2718 at 123.977 kb on - strand, within GFF2718 at 123.998 kb on - strand, within GFF2718 at 124.019 kb on - strand, within GFF2718 at 124.019 kb on - strand, within GFF2718 at 124.062 kb on + strand, within GFF2718 at 124.129 kb on + strand, within GFF2718 at 124.129 kb on + strand, within GFF2718 at 124.130 kb on - strand, within GFF2718 at 124.208 kb on + strand, within GFF2718 at 124.209 kb on - strand, within GFF2718 at 124.252 kb on + strand, within GFF2718 at 124.288 kb on + strand, within GFF2718 at 124.288 kb on + strand, within GFF2718 at 124.289 kb on - strand, within GFF2718 at 124.397 kb on - strand, within GFF2718 at 124.427 kb on + strand, within GFF2718 at 124.428 kb on - strand, within GFF2718 at 124.428 kb on - strand, within GFF2718 at 124.428 kb on - strand, within GFF2718 at 124.428 kb on - strand, within GFF2718 at 124.428 kb on - strand, within GFF2718 at 124.428 kb on - strand, within GFF2718 at 124.429 kb on + strand, within GFF2718 at 124.429 kb on + strand, within GFF2718 at 124.429 kb on + strand, within GFF2718 at 124.430 kb on - strand, within GFF2718 at 124.430 kb on - strand, within GFF2718 at 124.430 kb on - strand, within GFF2718 at 124.478 kb on + strand, within GFF2718 at 124.508 kb on + strand, within GFF2718 at 124.553 kb on - strand, within GFF2718 at 124.672 kb on + strand at 124.805 kb on + strand at 124.806 kb on - strand at 124.806 kb on - strand at 124.824 kb on + strand at 124.825 kb on - strand at 124.825 kb on - strand at 124.846 kb on + strand, within GFF2719 at 124.847 kb on - strand, within GFF2719 at 124.942 kb on - strand, within GFF2719 at 124.948 kb on + strand, within GFF2719 at 124.948 kb on + strand, within GFF2719 at 124.948 kb on + strand, within GFF2719 at 124.948 kb on + strand, within GFF2719 at 124.949 kb on - strand, within GFF2719 at 124.993 kb on + strand, within GFF2719 at 124.996 kb on - strand, within GFF2719 at 125.056 kb on + strand, within GFF2719 at 125.056 kb on + strand, within GFF2719 at 125.056 kb on + strand, within GFF2719 at 125.056 kb on + strand, within GFF2719 at 125.056 kb on + strand, within GFF2719 at 125.056 kb on + strand, within GFF2719 at 125.056 kb on + strand, within GFF2719 at 125.057 kb on - strand, within GFF2719 at 125.057 kb on - strand, within GFF2719 at 125.057 kb on - strand, within GFF2719 at 125.057 kb on - strand, within GFF2719 at 125.057 kb on - strand, within GFF2719 at 125.057 kb on - strand, within GFF2719 at 125.057 kb on - strand, within GFF2719 at 125.141 kb on + strand, within GFF2719 at 125.142 kb on - strand, within GFF2719 at 125.142 kb on - strand, within GFF2719 at 125.245 kb on - strand, within GFF2719 at 125.249 kb on + strand, within GFF2719 at 125.249 kb on + strand, within GFF2719 at 125.249 kb on + strand, within GFF2719 at 125.249 kb on + strand, within GFF2719 at 125.249 kb on + strand, within GFF2719 at 125.249 kb on + strand, within GFF2719 at 125.249 kb on + strand, within GFF2719 at 125.249 kb on + strand, within GFF2719 at 125.249 kb on + strand, within GFF2719 at 125.249 kb on + strand, within GFF2719 at 125.249 kb on + strand, within GFF2719 at 125.249 kb on + strand, within GFF2719 at 125.249 kb on + strand, within GFF2719 at 125.250 kb on - strand, within GFF2719 at 125.250 kb on - strand, within GFF2719 at 125.250 kb on - strand, within GFF2719 at 125.250 kb on - strand, within GFF2719 at 125.250 kb on - strand, within GFF2719 at 125.250 kb on - strand, within GFF2719 at 125.250 kb on - strand, within GFF2719 at 125.250 kb on - strand, within GFF2719 at 125.250 kb on - strand, within GFF2719 at 125.250 kb on - strand, within GFF2719 at 125.250 kb on - strand, within GFF2719 at 125.264 kb on + strand, within GFF2719 at 125.264 kb on + strand, within GFF2719 at 125.266 kb on + strand, within GFF2719 at 125.266 kb on + strand, within GFF2719 at 125.266 kb on + strand, within GFF2719 at 125.267 kb on - strand, within GFF2719 at 125.267 kb on - strand, within GFF2719 at 125.267 kb on - strand, within GFF2719 at 125.267 kb on - strand, within GFF2719 at 125.267 kb on - strand, within GFF2719 at 125.267 kb on - strand, within GFF2719 at 125.267 kb on - strand, within GFF2719 at 125.267 kb on - strand, within GFF2719 at 125.283 kb on + strand, within GFF2719 at 125.284 kb on - strand, within GFF2719 at 125.352 kb on + strand, within GFF2719 at 125.352 kb on + strand, within GFF2719 at 125.353 kb on - strand, within GFF2719 at 125.369 kb on + strand, within GFF2719 at 125.398 kb on - strand, within GFF2719 at 125.508 kb on + strand at 125.509 kb on - strand at 125.512 kb on + strand at 125.558 kb on - strand at 125.583 kb on + strand at 125.583 kb on + strand at 125.584 kb on - strand at 125.584 kb on - strand at 125.602 kb on + strand at 125.606 kb on - strand at 125.618 kb on + strand at 125.638 kb on + strand at 125.698 kb on + strand, within GFF2720 at 125.698 kb on + strand, within GFF2720
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 122,478 + GFF2717 0.21 +0.2 122,481 + GFF2717 0.21 +0.1 122,482 - GFF2717 0.21 -0.2 122,482 - GFF2717 0.21 -0.9 122,492 + GFF2717 0.22 -0.6 122,492 + GFF2717 0.22 -0.1 122,493 - GFF2717 0.22 +0.7 122,543 + GFF2717 0.26 -0.6 122,543 + GFF2717 0.26 -2.2 122,657 + GFF2717 0.36 -0.1 122,657 + GFF2717 0.36 +0.4 122,657 + GFF2717 0.36 +0.1 122,657 + GFF2717 0.36 -1.7 122,658 - GFF2717 0.37 +0.2 122,658 - GFF2717 0.37 -0.6 122,658 - GFF2717 0.37 -0.6 122,666 + GFF2717 0.37 -1.6 122,667 - GFF2717 0.37 +1.4 122,739 + GFF2717 0.44 -0.6 122,745 - GFF2717 0.44 -0.1 122,836 + GFF2717 0.52 +0.2 122,836 + GFF2717 0.52 +1.0 122,837 - GFF2717 0.52 -0.3 122,837 - GFF2717 0.52 -0.6 122,837 - GFF2717 0.52 -1.0 122,837 - GFF2717 0.52 -0.6 122,837 - GFF2717 0.52 -0.1 122,837 - GFF2717 0.52 -0.2 122,867 - GFF2717 0.55 -1.4 122,981 + GFF2717 0.65 -0.2 122,981 + GFF2717 0.65 -1.2 122,982 - GFF2717 0.65 -1.8 122,982 - GFF2717 0.65 +0.3 123,001 + GFF2717 0.67 +0.3 123,027 + GFF2717 0.69 -0.5 123,027 + GFF2717 0.69 -1.6 123,028 - GFF2717 0.69 -2.2 123,028 - GFF2717 0.69 +0.0 123,062 + GFF2717 0.72 +0.4 123,062 + GFF2717 0.72 -0.7 123,062 + GFF2717 0.72 +0.6 123,062 + GFF2717 0.72 +0.2 123,063 - GFF2717 0.72 +0.6 123,072 + GFF2717 0.73 -0.6 123,072 + GFF2717 0.73 +0.5 123,072 + GFF2717 0.73 -0.7 123,073 - GFF2717 0.73 -1.0 123,073 - GFF2717 0.73 -0.5 123,073 - GFF2717 0.73 +0.0 123,129 + GFF2717 0.78 -0.6 123,129 + GFF2717 0.78 -1.3 123,129 + GFF2717 0.78 -1.3 123,129 + GFF2717 0.78 -0.4 123,130 - GFF2717 0.78 +0.0 123,130 - GFF2717 0.78 -0.9 123,183 + GFF2717 0.83 +0.1 123,183 + GFF2717 0.83 +0.6 123,184 - GFF2717 0.83 +1.0 123,206 + GFF2717 0.85 +0.3 123,210 + GFF2717 0.85 +0.2 123,211 - GFF2717 0.85 -0.2 123,241 + GFF2717 0.88 -0.8 123,242 - GFF2717 0.88 -2.2 123,252 + GFF2717 0.89 -0.2 123,253 - GFF2717 0.89 -1.2 123,321 - -1.0 123,346 - +0.0 123,401 + -0.6 123,401 + +0.2 123,401 + -0.7 123,401 + -0.5 123,401 + -1.2 123,402 - +0.3 123,402 - +1.0 123,402 - -2.2 123,442 - -0.9 123,442 - -1.3 123,457 + -1.3 123,458 - -1.8 123,458 - +1.0 123,578 + -1.0 123,578 + +0.3 123,578 + -0.9 123,578 + -1.3 123,579 - -0.8 123,579 - -1.2 123,582 + -2.0 123,582 + -0.8 123,582 + -0.4 123,583 - -0.3 123,583 - -0.3 123,583 - -1.0 123,583 - -2.3 123,583 - +0.2 123,583 - +0.6 123,583 - -0.3 123,599 + -1.6 123,615 + GFF2718 0.11 +0.0 123,615 + GFF2718 0.11 -0.8 123,615 + GFF2718 0.11 -0.2 123,616 - GFF2718 0.11 -1.2 123,616 - GFF2718 0.11 -0.1 123,616 - GFF2718 0.11 -0.8 123,616 - GFF2718 0.11 +0.0 123,624 + GFF2718 0.11 -2.3 123,625 - GFF2718 0.11 -1.6 123,635 + GFF2718 0.12 -0.4 123,636 - GFF2718 0.12 +0.0 123,636 - GFF2718 0.12 -1.3 123,650 - GFF2718 0.13 -1.7 123,714 - GFF2718 0.18 -0.7 123,753 + GFF2718 0.21 -0.9 123,754 - GFF2718 0.21 -0.2 123,754 - GFF2718 0.21 -1.6 123,754 - GFF2718 0.21 -0.2 123,826 + GFF2718 0.27 -1.0 123,844 + GFF2718 0.28 -0.2 123,844 + GFF2718 0.28 -1.8 123,844 + GFF2718 0.28 -2.0 123,845 - GFF2718 0.28 -1.3 123,912 + GFF2718 0.34 -1.1 123,912 + GFF2718 0.34 -0.7 123,913 - GFF2718 0.34 -1.8 123,915 + GFF2718 0.34 -2.4 123,916 - GFF2718 0.34 -0.6 123,938 + GFF2718 0.36 -1.6 123,938 + GFF2718 0.36 -0.6 123,939 - GFF2718 0.36 -0.5 123,939 - GFF2718 0.36 +0.0 123,956 + GFF2718 0.37 -1.8 123,976 + GFF2718 0.38 -1.2 123,976 + GFF2718 0.38 -0.5 123,977 - GFF2718 0.39 -0.3 123,977 - GFF2718 0.39 -1.0 123,998 - GFF2718 0.40 -1.6 124,019 - GFF2718 0.42 -2.2 124,019 - GFF2718 0.42 -0.6 124,062 + GFF2718 0.45 -0.4 124,129 + GFF2718 0.50 -1.4 124,129 + GFF2718 0.50 -0.8 124,130 - GFF2718 0.50 -1.3 124,208 + GFF2718 0.56 -1.6 124,209 - GFF2718 0.56 -1.6 124,252 + GFF2718 0.60 -0.1 124,288 + GFF2718 0.63 -1.0 124,288 + GFF2718 0.63 -0.6 124,289 - GFF2718 0.63 -1.0 124,397 - GFF2718 0.71 -1.6 124,427 + GFF2718 0.73 -1.9 124,428 - GFF2718 0.73 -1.1 124,428 - GFF2718 0.73 -2.0 124,428 - GFF2718 0.73 -1.9 124,428 - GFF2718 0.73 +0.3 124,428 - GFF2718 0.73 -0.8 124,428 - GFF2718 0.73 -0.8 124,429 + GFF2718 0.73 +0.0 124,429 + GFF2718 0.73 -1.3 124,429 + GFF2718 0.73 -1.3 124,430 - GFF2718 0.73 -1.7 124,430 - GFF2718 0.73 -1.6 124,430 - GFF2718 0.73 -0.8 124,478 + GFF2718 0.77 -0.6 124,508 + GFF2718 0.79 -1.3 124,553 - GFF2718 0.83 -1.0 124,672 + -0.7 124,805 + -1.2 124,806 - -0.9 124,806 - -0.3 124,824 + +0.5 124,825 - +0.0 124,825 - +0.0 124,846 + GFF2719 0.10 +0.1 124,847 - GFF2719 0.10 -0.0 124,942 - GFF2719 0.23 +0.3 124,948 + GFF2719 0.24 -0.2 124,948 + GFF2719 0.24 -1.3 124,948 + GFF2719 0.24 -2.0 124,948 + GFF2719 0.24 -3.0 124,949 - GFF2719 0.24 +0.2 124,993 + GFF2719 0.30 +0.7 124,996 - GFF2719 0.30 +0.3 125,056 + GFF2719 0.38 -0.4 125,056 + GFF2719 0.38 +0.3 125,056 + GFF2719 0.38 -0.1 125,056 + GFF2719 0.38 +1.0 125,056 + GFF2719 0.38 -0.7 125,056 + GFF2719 0.38 -1.3 125,056 + GFF2719 0.38 +0.6 125,057 - GFF2719 0.38 -0.8 125,057 - GFF2719 0.38 -1.2 125,057 - GFF2719 0.38 -0.5 125,057 - GFF2719 0.38 -0.9 125,057 - GFF2719 0.38 -0.3 125,057 - GFF2719 0.38 -0.6 125,057 - GFF2719 0.38 +0.0 125,141 + GFF2719 0.50 -0.6 125,142 - GFF2719 0.50 +0.6 125,142 - GFF2719 0.50 +0.4 125,245 - GFF2719 0.64 +0.8 125,249 + GFF2719 0.64 -1.0 125,249 + GFF2719 0.64 -0.3 125,249 + GFF2719 0.64 -1.8 125,249 + GFF2719 0.64 +0.3 125,249 + GFF2719 0.64 +0.3 125,249 + GFF2719 0.64 -1.4 125,249 + GFF2719 0.64 -0.5 125,249 + GFF2719 0.64 -1.0 125,249 + GFF2719 0.64 +0.0 125,249 + GFF2719 0.64 +1.6 125,249 + GFF2719 0.64 -0.3 125,249 + GFF2719 0.64 -1.4 125,249 + GFF2719 0.64 +0.7 125,250 - GFF2719 0.64 -1.2 125,250 - GFF2719 0.64 +1.0 125,250 - GFF2719 0.64 -0.2 125,250 - GFF2719 0.64 -1.3 125,250 - GFF2719 0.64 +1.0 125,250 - GFF2719 0.64 -1.9 125,250 - GFF2719 0.64 +0.6 125,250 - GFF2719 0.64 -1.6 125,250 - GFF2719 0.64 +0.4 125,250 - GFF2719 0.64 +0.6 125,250 - GFF2719 0.64 +0.3 125,264 + GFF2719 0.66 -1.3 125,264 + GFF2719 0.66 -1.7 125,266 + GFF2719 0.67 -0.8 125,266 + GFF2719 0.67 +0.0 125,266 + GFF2719 0.67 +0.0 125,267 - GFF2719 0.67 -1.0 125,267 - GFF2719 0.67 +0.3 125,267 - GFF2719 0.67 -0.3 125,267 - GFF2719 0.67 -0.1 125,267 - GFF2719 0.67 -0.8 125,267 - GFF2719 0.67 -0.7 125,267 - GFF2719 0.67 -1.0 125,267 - GFF2719 0.67 -0.7 125,283 + GFF2719 0.69 -0.6 125,284 - GFF2719 0.69 -0.3 125,352 + GFF2719 0.78 -0.4 125,352 + GFF2719 0.78 -1.1 125,353 - GFF2719 0.78 -0.3 125,369 + GFF2719 0.80 +0.0 125,398 - GFF2719 0.84 -0.6 125,508 + -0.7 125,509 - +0.0 125,512 + -0.1 125,558 - -1.0 125,583 + -1.3 125,583 + +0.0 125,584 - -0.7 125,584 - -0.8 125,602 + +0.5 125,606 - -0.3 125,618 + -1.2 125,638 + -0.0 125,698 + GFF2720 0.15 +0.7 125,698 + GFF2720 0.15 -0.5
Or see this region's nucleotide sequence