Strain Fitness in Methylophilus sp. DMC18 around GFF2695

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2693 and GFF2694 are separated by 1 nucleotidesGFF2694 and GFF2695 are separated by 204 nucleotidesGFF2695 and GFF2696 are separated by 29 nucleotides GFF2693 - hypothetical protein, at 96,878 to 97,675 GFF2693 GFF2694 - hypothetical protein, at 97,677 to 98,465 GFF2694 GFF2695 - Outer membrane lipoprotein pcp, at 98,670 to 99,128 GFF2695 GFF2696 - Adenosine kinase, at 99,158 to 100,126 GFF2696 Position (kb) 98 99 100Strain fitness (log2 ratio) -2 -1 0 1at 97.699 kb on + strandat 97.725 kb on + strandat 97.748 kb on + strandat 97.748 kb on + strandat 97.752 kb on - strandat 97.784 kb on + strand, within GFF2694at 97.784 kb on + strand, within GFF2694at 97.784 kb on + strand, within GFF2694at 97.785 kb on - strand, within GFF2694at 97.785 kb on - strand, within GFF2694at 97.785 kb on - strand, within GFF2694at 97.785 kb on - strand, within GFF2694at 97.785 kb on - strand, within GFF2694at 97.786 kb on + strand, within GFF2694at 97.804 kb on + strand, within GFF2694at 97.805 kb on - strand, within GFF2694at 97.805 kb on - strand, within GFF2694at 97.888 kb on + strand, within GFF2694at 97.906 kb on + strand, within GFF2694at 97.907 kb on - strand, within GFF2694at 97.987 kb on + strand, within GFF2694at 97.987 kb on + strand, within GFF2694at 97.987 kb on + strand, within GFF2694at 97.988 kb on - strand, within GFF2694at 97.988 kb on - strand, within GFF2694at 97.988 kb on - strand, within GFF2694at 97.988 kb on - strand, within GFF2694at 97.988 kb on - strand, within GFF2694at 97.988 kb on - strand, within GFF2694at 97.994 kb on - strand, within GFF2694at 98.012 kb on - strand, within GFF2694at 98.091 kb on + strand, within GFF2694at 98.092 kb on - strand, within GFF2694at 98.092 kb on - strand, within GFF2694at 98.092 kb on - strand, within GFF2694at 98.146 kb on + strand, within GFF2694at 98.146 kb on + strand, within GFF2694at 98.146 kb on + strand, within GFF2694at 98.146 kb on + strand, within GFF2694at 98.147 kb on - strand, within GFF2694at 98.150 kb on - strand, within GFF2694at 98.192 kb on - strand, within GFF2694at 98.192 kb on - strand, within GFF2694at 98.216 kb on + strand, within GFF2694at 98.217 kb on - strand, within GFF2694at 98.262 kb on + strand, within GFF2694at 98.262 kb on + strand, within GFF2694at 98.431 kb on + strandat 98.434 kb on - strandat 98.460 kb on + strandat 98.489 kb on + strandat 98.490 kb on - strandat 98.490 kb on - strandat 98.490 kb on - strandat 98.497 kb on + strandat 98.497 kb on + strandat 98.497 kb on + strandat 98.498 kb on - strandat 98.498 kb on - strandat 98.500 kb on + strandat 98.500 kb on + strandat 98.501 kb on - strandat 98.501 kb on - strandat 98.501 kb on - strandat 98.501 kb on - strandat 98.556 kb on + strandat 98.556 kb on + strandat 98.556 kb on + strandat 98.557 kb on - strandat 98.583 kb on - strandat 98.583 kb on - strandat 98.585 kb on + strandat 98.599 kb on + strandat 98.599 kb on + strandat 98.672 kb on - strandat 98.712 kb on + strandat 98.942 kb on + strand, within GFF2695at 98.943 kb on - strand, within GFF2695at 98.947 kb on - strand, within GFF2695at 98.947 kb on - strand, within GFF2695at 98.947 kb on - strand, within GFF2695at 98.995 kb on - strand, within GFF2695at 99.041 kb on - strand, within GFF2695at 99.048 kb on - strand, within GFF2695at 99.057 kb on - strand, within GFF2695at 99.115 kb on - strandat 99.115 kb on - strandat 99.115 kb on - strandat 99.160 kb on - strandat 99.182 kb on - strandat 99.207 kb on - strandat 99.222 kb on + strandat 99.223 kb on - strandat 99.223 kb on - strandat 99.299 kb on - strand, within GFF2696at 99.349 kb on - strand, within GFF2696at 99.367 kb on - strand, within GFF2696at 99.392 kb on + strand, within GFF2696at 99.393 kb on - strand, within GFF2696at 99.400 kb on + strand, within GFF2696at 99.400 kb on + strand, within GFF2696at 99.401 kb on - strand, within GFF2696at 99.401 kb on - strand, within GFF2696at 99.401 kb on - strand, within GFF2696at 99.401 kb on - strand, within GFF2696at 99.401 kb on - strand, within GFF2696at 99.444 kb on + strand, within GFF2696at 99.444 kb on + strand, within GFF2696at 99.444 kb on + strand, within GFF2696at 99.445 kb on - strand, within GFF2696at 99.445 kb on - strand, within GFF2696at 99.445 kb on - strand, within GFF2696at 99.449 kb on - strand, within GFF2696at 99.550 kb on - strand, within GFF2696at 99.567 kb on + strand, within GFF2696at 99.568 kb on - strand, within GFF2696at 99.568 kb on - strand, within GFF2696at 99.568 kb on - strand, within GFF2696at 99.568 kb on - strand, within GFF2696at 99.584 kb on - strand, within GFF2696at 99.607 kb on + strand, within GFF2696at 99.607 kb on + strand, within GFF2696at 99.724 kb on + strand, within GFF2696at 99.724 kb on + strand, within GFF2696at 99.725 kb on - strand, within GFF2696at 99.752 kb on - strand, within GFF2696at 99.752 kb on - strand, within GFF2696at 99.752 kb on - strand, within GFF2696at 99.759 kb on + strand, within GFF2696at 99.759 kb on + strand, within GFF2696at 99.760 kb on - strand, within GFF2696at 99.760 kb on - strand, within GFF2696at 99.760 kb on - strand, within GFF2696at 99.760 kb on - strand, within GFF2696at 99.760 kb on - strand, within GFF2696at 99.760 kb on - strand, within GFF2696at 99.760 kb on - strand, within GFF2696at 99.788 kb on - strand, within GFF2696at 99.818 kb on - strand, within GFF2696at 99.818 kb on - strand, within GFF2696at 99.818 kb on - strand, within GFF2696at 99.835 kb on - strand, within GFF2696at 99.835 kb on - strand, within GFF2696at 99.835 kb on - strand, within GFF2696at 99.871 kb on + strand, within GFF2696at 99.871 kb on + strand, within GFF2696at 99.871 kb on + strand, within GFF2696at 99.871 kb on + strand, within GFF2696at 99.872 kb on - strand, within GFF2696at 99.872 kb on - strand, within GFF2696at 99.872 kb on - strand, within GFF2696at 99.872 kb on - strand, within GFF2696at 99.872 kb on - strand, within GFF2696at 99.872 kb on - strand, within GFF2696at 99.872 kb on - strand, within GFF2696at 99.872 kb on - strand, within GFF2696at 99.872 kb on - strand, within GFF2696at 99.872 kb on - strand, within GFF2696at 99.872 kb on - strand, within GFF2696at 99.897 kb on + strand, within GFF2696at 99.963 kb on + strand, within GFF2696at 99.963 kb on + strand, within GFF2696at 99.963 kb on + strand, within GFF2696at 99.963 kb on + strand, within GFF2696at 99.964 kb on - strand, within GFF2696at 99.964 kb on - strand, within GFF2696at 99.964 kb on - strand, within GFF2696at 99.964 kb on - strand, within GFF2696at 99.971 kb on - strand, within GFF2696at 99.971 kb on - strand, within GFF2696at 99.971 kb on - strand, within GFF2696at 99.971 kb on - strand, within GFF2696at 100.033 kb on + strandat 100.115 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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97,699 + -1.0
97,725 + +0.0
97,748 + -1.0
97,748 + -1.3
97,752 - +0.0
97,784 + GFF2694 0.14 -0.6
97,784 + GFF2694 0.14 -1.0
97,784 + GFF2694 0.14 -0.6
97,785 - GFF2694 0.14 -1.8
97,785 - GFF2694 0.14 -0.6
97,785 - GFF2694 0.14 -0.9
97,785 - GFF2694 0.14 -0.3
97,785 - GFF2694 0.14 +0.0
97,786 + GFF2694 0.14 -2.3
97,804 + GFF2694 0.16 -1.0
97,805 - GFF2694 0.16 -0.5
97,805 - GFF2694 0.16 +0.2
97,888 + GFF2694 0.27 +0.0
97,906 + GFF2694 0.29 -0.6
97,907 - GFF2694 0.29 -1.9
97,987 + GFF2694 0.39 -0.4
97,987 + GFF2694 0.39 -0.3
97,987 + GFF2694 0.39 -1.3
97,988 - GFF2694 0.39 -1.0
97,988 - GFF2694 0.39 +0.1
97,988 - GFF2694 0.39 +0.4
97,988 - GFF2694 0.39 -0.3
97,988 - GFF2694 0.39 +0.6
97,988 - GFF2694 0.39 -1.4
97,994 - GFF2694 0.40 +1.0
98,012 - GFF2694 0.42 -0.3
98,091 + GFF2694 0.52 -0.3
98,092 - GFF2694 0.53 +1.4
98,092 - GFF2694 0.53 +0.0
98,092 - GFF2694 0.53 -0.4
98,146 + GFF2694 0.59 -1.3
98,146 + GFF2694 0.59 -0.7
98,146 + GFF2694 0.59 -0.1
98,146 + GFF2694 0.59 -1.0
98,147 - GFF2694 0.60 -0.6
98,150 - GFF2694 0.60 +0.2
98,192 - GFF2694 0.65 -0.4
98,192 - GFF2694 0.65 -1.0
98,216 + GFF2694 0.68 -0.3
98,217 - GFF2694 0.68 -0.4
98,262 + GFF2694 0.74 -0.4
98,262 + GFF2694 0.74 +0.1
98,431 + -0.7
98,434 - -0.6
98,460 + -1.4
98,489 + -1.0
98,490 - -1.1
98,490 - -0.3
98,490 - -1.1
98,497 + +0.2
98,497 + -2.4
98,497 + -1.0
98,498 - -1.2
98,498 - -0.8
98,500 + -0.9
98,500 + +0.3
98,501 - -0.9
98,501 - +1.0
98,501 - +0.7
98,501 - +0.6
98,556 + -1.2
98,556 + +0.2
98,556 + +0.2
98,557 - -0.2
98,583 - -0.7
98,583 - -0.3
98,585 + -0.3
98,599 + +1.3
98,599 + -0.3
98,672 - +1.0
98,712 + +0.0
98,942 + GFF2695 0.59 +0.3
98,943 - GFF2695 0.59 -1.0
98,947 - GFF2695 0.60 +1.0
98,947 - GFF2695 0.60 -0.7
98,947 - GFF2695 0.60 -0.8
98,995 - GFF2695 0.71 -1.3
99,041 - GFF2695 0.81 -1.0
99,048 - GFF2695 0.82 +0.0
99,057 - GFF2695 0.84 -1.6
99,115 - -0.1
99,115 - +0.2
99,115 - +0.0
99,160 - +0.2
99,182 - -0.2
99,207 - -2.0
99,222 + +0.0
99,223 - -0.1
99,223 - +0.0
99,299 - GFF2696 0.15 +0.2
99,349 - GFF2696 0.20 -2.0
99,367 - GFF2696 0.22 +0.7
99,392 + GFF2696 0.24 -1.0
99,393 - GFF2696 0.24 -1.0
99,400 + GFF2696 0.25 -0.6
99,400 + GFF2696 0.25 -0.3
99,401 - GFF2696 0.25 -1.6
99,401 - GFF2696 0.25 -1.6
99,401 - GFF2696 0.25 -1.0
99,401 - GFF2696 0.25 +0.3
99,401 - GFF2696 0.25 -0.6
99,444 + GFF2696 0.30 +0.3
99,444 + GFF2696 0.30 +0.3
99,444 + GFF2696 0.30 -0.4
99,445 - GFF2696 0.30 -0.3
99,445 - GFF2696 0.30 -1.0
99,445 - GFF2696 0.30 -1.0
99,449 - GFF2696 0.30 -1.0
99,550 - GFF2696 0.40 -0.9
99,567 + GFF2696 0.42 -1.2
99,568 - GFF2696 0.42 -1.0
99,568 - GFF2696 0.42 -1.0
99,568 - GFF2696 0.42 -1.4
99,568 - GFF2696 0.42 -1.2
99,584 - GFF2696 0.44 -0.3
99,607 + GFF2696 0.46 +0.0
99,607 + GFF2696 0.46 +0.4
99,724 + GFF2696 0.58 -1.0
99,724 + GFF2696 0.58 -1.0
99,725 - GFF2696 0.59 -0.3
99,752 - GFF2696 0.61 +0.3
99,752 - GFF2696 0.61 +0.5
99,752 - GFF2696 0.61 -0.5
99,759 + GFF2696 0.62 +0.6
99,759 + GFF2696 0.62 -0.4
99,760 - GFF2696 0.62 -0.2
99,760 - GFF2696 0.62 -0.6
99,760 - GFF2696 0.62 -0.7
99,760 - GFF2696 0.62 +0.1
99,760 - GFF2696 0.62 -0.7
99,760 - GFF2696 0.62 -0.3
99,760 - GFF2696 0.62 +1.3
99,788 - GFF2696 0.65 -0.1
99,818 - GFF2696 0.68 -0.6
99,818 - GFF2696 0.68 +1.3
99,818 - GFF2696 0.68 -0.8
99,835 - GFF2696 0.70 -1.2
99,835 - GFF2696 0.70 -1.6
99,835 - GFF2696 0.70 +0.0
99,871 + GFF2696 0.74 -0.8
99,871 + GFF2696 0.74 -1.0
99,871 + GFF2696 0.74 +0.4
99,871 + GFF2696 0.74 -0.7
99,872 - GFF2696 0.74 -1.2
99,872 - GFF2696 0.74 -0.3
99,872 - GFF2696 0.74 -1.0
99,872 - GFF2696 0.74 -0.0
99,872 - GFF2696 0.74 -0.1
99,872 - GFF2696 0.74 -0.3
99,872 - GFF2696 0.74 -1.0
99,872 - GFF2696 0.74 +0.1
99,872 - GFF2696 0.74 -0.3
99,872 - GFF2696 0.74 -1.2
99,872 - GFF2696 0.74 -0.4
99,897 + GFF2696 0.76 +0.0
99,963 + GFF2696 0.83 -1.2
99,963 + GFF2696 0.83 +0.5
99,963 + GFF2696 0.83 +0.6
99,963 + GFF2696 0.83 -0.6
99,964 - GFF2696 0.83 +1.0
99,964 - GFF2696 0.83 -1.7
99,964 - GFF2696 0.83 -0.4
99,964 - GFF2696 0.83 -0.6
99,971 - GFF2696 0.84 -1.2
99,971 - GFF2696 0.84 +0.3
99,971 - GFF2696 0.84 -0.6
99,971 - GFF2696 0.84 +0.6
100,033 + -0.6
100,115 - -1.8

Or see this region's nucleotide sequence