Strain Fitness in Methylophilus sp. DMC18 around GFF264

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF263 and GFF264 are separated by 135 nucleotidesGFF264 and GFF265 are separated by 2 nucleotidesGFF265 and GFF266 are separated by 22 nucleotides GFF263 - LPS-assembly protein LptD, at 279,575 to 281,965 GFF263 GFF264 - N-acetylmuramate/N-acetylglucosamine kinase, at 282,101 to 283,132 GFF264 GFF265 - N-acetylmuramate alpha-1-phosphate uridylyltransferase, at 283,135 to 283,800 GFF265 GFF266 - Protein PsiE, at 283,823 to 284,251 GFF266 Position (kb) 282 283 284Strain fitness (log2 ratio) -2 -1 0 1at 282.004 kb on - strandat 282.008 kb on - strandat 282.097 kb on + strandat 282.142 kb on + strandat 282.143 kb on - strandat 282.169 kb on + strandat 282.204 kb on + strandat 282.204 kb on + strandat 282.204 kb on + strandat 282.205 kb on - strand, within GFF264at 282.261 kb on - strand, within GFF264at 282.261 kb on - strand, within GFF264at 282.270 kb on + strand, within GFF264at 282.271 kb on - strand, within GFF264at 282.357 kb on + strand, within GFF264at 282.446 kb on + strand, within GFF264at 282.446 kb on + strand, within GFF264at 282.446 kb on + strand, within GFF264at 282.446 kb on + strand, within GFF264at 282.447 kb on - strand, within GFF264at 282.447 kb on - strand, within GFF264at 282.447 kb on - strand, within GFF264at 282.485 kb on + strand, within GFF264at 282.485 kb on + strand, within GFF264at 282.486 kb on - strand, within GFF264at 282.579 kb on + strand, within GFF264at 282.579 kb on + strand, within GFF264at 282.579 kb on + strand, within GFF264at 282.599 kb on + strand, within GFF264at 282.599 kb on + strand, within GFF264at 282.599 kb on + strand, within GFF264at 282.599 kb on + strand, within GFF264at 282.599 kb on + strand, within GFF264at 282.600 kb on - strand, within GFF264at 282.600 kb on - strand, within GFF264at 282.600 kb on - strand, within GFF264at 282.600 kb on - strand, within GFF264at 282.713 kb on - strand, within GFF264at 282.719 kb on + strand, within GFF264at 282.719 kb on + strand, within GFF264at 282.719 kb on + strand, within GFF264at 282.754 kb on + strand, within GFF264at 282.799 kb on + strand, within GFF264at 282.799 kb on + strand, within GFF264at 282.799 kb on + strand, within GFF264at 282.799 kb on + strand, within GFF264at 282.800 kb on - strand, within GFF264at 282.804 kb on - strand, within GFF264at 282.804 kb on - strand, within GFF264at 282.804 kb on - strand, within GFF264at 282.804 kb on - strand, within GFF264at 282.833 kb on + strand, within GFF264at 282.833 kb on + strand, within GFF264at 282.833 kb on + strand, within GFF264at 282.833 kb on + strand, within GFF264at 282.833 kb on + strand, within GFF264at 282.833 kb on + strand, within GFF264at 282.833 kb on + strand, within GFF264at 282.833 kb on + strand, within GFF264at 282.833 kb on + strand, within GFF264at 282.833 kb on + strand, within GFF264at 282.833 kb on + strand, within GFF264at 282.833 kb on + strand, within GFF264at 282.834 kb on - strand, within GFF264at 282.834 kb on - strand, within GFF264at 282.834 kb on - strand, within GFF264at 282.834 kb on - strand, within GFF264at 282.834 kb on - strand, within GFF264at 282.834 kb on - strand, within GFF264at 282.834 kb on - strand, within GFF264at 282.834 kb on - strand, within GFF264at 282.834 kb on - strand, within GFF264at 282.834 kb on - strand, within GFF264at 282.836 kb on - strand, within GFF264at 283.002 kb on - strand, within GFF264at 283.026 kb on - strand, within GFF264at 283.037 kb on - strandat 283.055 kb on + strandat 283.079 kb on + strandat 283.102 kb on + strandat 283.119 kb on + strandat 283.422 kb on - strand, within GFF265at 283.459 kb on + strand, within GFF265at 283.766 kb on + strandat 283.787 kb on + strandat 283.798 kb on + strandat 283.799 kb on - strandat 283.835 kb on + strandat 283.835 kb on + strandat 283.836 kb on - strandat 283.836 kb on - strandat 283.843 kb on + strandat 283.844 kb on - strandat 283.844 kb on - strandat 283.881 kb on + strand, within GFF266at 283.881 kb on + strand, within GFF266at 283.882 kb on - strand, within GFF266at 283.882 kb on - strand, within GFF266at 283.890 kb on + strand, within GFF266at 283.948 kb on + strand, within GFF266at 283.949 kb on - strand, within GFF266at 283.949 kb on - strand, within GFF266at 283.949 kb on - strand, within GFF266at 284.000 kb on + strand, within GFF266at 284.000 kb on + strand, within GFF266at 284.001 kb on - strand, within GFF266at 284.069 kb on + strand, within GFF266at 284.069 kb on + strand, within GFF266at 284.069 kb on + strand, within GFF266at 284.070 kb on - strand, within GFF266at 284.071 kb on + strand, within GFF266at 284.071 kb on + strand, within GFF266at 284.071 kb on + strand, within GFF266at 284.072 kb on - strand, within GFF266at 284.096 kb on + strand, within GFF266at 284.097 kb on - strand, within GFF266

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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282,004 - +0.0
282,008 - -1.0
282,097 + -1.1
282,142 + -0.1
282,143 - -0.5
282,169 + -0.1
282,204 + -0.6
282,204 + -1.0
282,204 + -0.2
282,205 - GFF264 0.10 -1.0
282,261 - GFF264 0.16 -1.0
282,261 - GFF264 0.16 +0.0
282,270 + GFF264 0.16 -1.3
282,271 - GFF264 0.16 +0.3
282,357 + GFF264 0.25 +0.0
282,446 + GFF264 0.33 +0.6
282,446 + GFF264 0.33 +0.0
282,446 + GFF264 0.33 +0.0
282,446 + GFF264 0.33 -1.7
282,447 - GFF264 0.34 -1.6
282,447 - GFF264 0.34 -1.3
282,447 - GFF264 0.34 -0.2
282,485 + GFF264 0.37 -1.0
282,485 + GFF264 0.37 -0.2
282,486 - GFF264 0.37 -1.0
282,579 + GFF264 0.46 -0.2
282,579 + GFF264 0.46 -1.3
282,579 + GFF264 0.46 +0.7
282,599 + GFF264 0.48 -1.0
282,599 + GFF264 0.48 -1.9
282,599 + GFF264 0.48 -1.8
282,599 + GFF264 0.48 -0.8
282,599 + GFF264 0.48 -1.5
282,600 - GFF264 0.48 -1.6
282,600 - GFF264 0.48 -1.0
282,600 - GFF264 0.48 -0.5
282,600 - GFF264 0.48 +1.0
282,713 - GFF264 0.59 -1.3
282,719 + GFF264 0.60 -1.0
282,719 + GFF264 0.60 -1.3
282,719 + GFF264 0.60 +0.0
282,754 + GFF264 0.63 -1.8
282,799 + GFF264 0.68 -0.8
282,799 + GFF264 0.68 +0.6
282,799 + GFF264 0.68 -1.6
282,799 + GFF264 0.68 -1.2
282,800 - GFF264 0.68 +0.3
282,804 - GFF264 0.68 +1.3
282,804 - GFF264 0.68 -2.2
282,804 - GFF264 0.68 -0.2
282,804 - GFF264 0.68 -0.3
282,833 + GFF264 0.71 -0.3
282,833 + GFF264 0.71 -1.0
282,833 + GFF264 0.71 -0.4
282,833 + GFF264 0.71 +0.2
282,833 + GFF264 0.71 -0.3
282,833 + GFF264 0.71 -1.3
282,833 + GFF264 0.71 +1.2
282,833 + GFF264 0.71 -1.3
282,833 + GFF264 0.71 -1.2
282,833 + GFF264 0.71 -1.0
282,833 + GFF264 0.71 -0.3
282,833 + GFF264 0.71 -0.3
282,834 - GFF264 0.71 -1.6
282,834 - GFF264 0.71 +0.1
282,834 - GFF264 0.71 -0.7
282,834 - GFF264 0.71 +0.0
282,834 - GFF264 0.71 -0.6
282,834 - GFF264 0.71 -0.3
282,834 - GFF264 0.71 -0.7
282,834 - GFF264 0.71 -1.0
282,834 - GFF264 0.71 -0.2
282,834 - GFF264 0.71 -1.0
282,836 - GFF264 0.71 -0.6
283,002 - GFF264 0.87 +0.0
283,026 - GFF264 0.90 +0.2
283,037 - +0.4
283,055 + -1.3
283,079 + -1.2
283,102 + -0.3
283,119 + -2.0
283,422 - GFF265 0.43 -1.0
283,459 + GFF265 0.49 -0.8
283,766 + -1.3
283,787 + +1.5
283,798 + -2.3
283,799 - +0.2
283,835 + -0.8
283,835 + -0.5
283,836 - +0.0
283,836 - -0.4
283,843 + -1.0
283,844 - -1.0
283,844 - -1.9
283,881 + GFF266 0.14 -0.4
283,881 + GFF266 0.14 -1.6
283,882 - GFF266 0.14 +0.2
283,882 - GFF266 0.14 -0.1
283,890 + GFF266 0.16 +0.7
283,948 + GFF266 0.29 -0.2
283,949 - GFF266 0.29 +0.0
283,949 - GFF266 0.29 +0.2
283,949 - GFF266 0.29 +0.3
284,000 + GFF266 0.41 +0.4
284,000 + GFF266 0.41 -1.3
284,001 - GFF266 0.41 -0.3
284,069 + GFF266 0.57 -0.2
284,069 + GFF266 0.57 +0.1
284,069 + GFF266 0.57 -0.1
284,070 - GFF266 0.58 -2.0
284,071 + GFF266 0.58 -0.4
284,071 + GFF266 0.58 -0.4
284,071 + GFF266 0.58 +1.0
284,072 - GFF266 0.58 +0.5
284,096 + GFF266 0.64 +0.6
284,097 - GFF266 0.64 +0.0

Or see this region's nucleotide sequence