Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2602 and GFF2603 are separated by 62 nucleotides GFF2603 and GFF2604 are separated by 33 nucleotides
GFF2602 - Glutamate racemase, at 741 to 1,523
GFF2602
GFF2603 - Cobalamin adenosyltransferase, at 1,586 to 2,137
GFF2603
GFF2604 - Poly(A) polymerase I, at 2,171 to 3,517
GFF2604
Position (kb) 0
1
2 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 0.045 kb on + strand at 0.045 kb on + strand at 0.045 kb on + strand at 0.045 kb on + strand at 0.045 kb on + strand at 0.045 kb on + strand at 0.045 kb on + strand at 0.058 kb on + strand at 0.058 kb on + strand at 0.058 kb on + strand at 0.058 kb on + strand at 0.071 kb on + strand at 0.073 kb on + strand at 0.073 kb on + strand at 0.073 kb on + strand at 0.092 kb on + strand at 0.092 kb on + strand at 0.092 kb on + strand at 0.092 kb on + strand at 0.092 kb on + strand at 0.093 kb on - strand at 0.093 kb on - strand at 0.093 kb on - strand at 0.096 kb on + strand at 0.097 kb on - strand at 0.097 kb on - strand at 0.117 kb on - strand at 0.117 kb on - strand at 0.193 kb on - strand at 0.262 kb on + strand at 0.262 kb on + strand at 0.333 kb on + strand at 0.333 kb on + strand at 0.333 kb on + strand at 0.334 kb on - strand at 0.337 kb on + strand at 0.337 kb on + strand at 0.337 kb on + strand at 0.337 kb on + strand at 0.337 kb on + strand at 0.337 kb on + strand at 0.337 kb on + strand at 0.337 kb on + strand at 0.337 kb on + strand at 0.338 kb on - strand at 0.338 kb on - strand at 0.338 kb on - strand at 0.338 kb on - strand at 0.338 kb on - strand at 0.430 kb on + strand at 0.480 kb on - strand at 0.483 kb on + strand at 0.483 kb on + strand at 0.483 kb on + strand at 0.483 kb on + strand at 0.483 kb on + strand at 0.483 kb on + strand at 0.483 kb on + strand at 0.483 kb on + strand at 0.483 kb on + strand at 0.504 kb on + strand at 0.511 kb on + strand at 0.511 kb on + strand at 0.512 kb on - strand at 0.512 kb on - strand at 0.516 kb on + strand at 0.516 kb on + strand at 0.517 kb on - strand at 0.534 kb on + strand at 0.535 kb on - strand at 0.535 kb on - strand at 0.608 kb on - strand at 0.657 kb on + strand at 0.657 kb on + strand at 0.657 kb on + strand at 0.658 kb on - strand at 0.690 kb on + strand at 0.691 kb on - strand at 0.698 kb on - strand at 0.701 kb on + strand at 0.701 kb on + strand at 0.702 kb on - strand at 0.709 kb on + strand at 0.729 kb on - strand at 0.729 kb on - strand at 0.734 kb on + strand at 0.735 kb on - strand at 0.735 kb on - strand at 0.771 kb on + strand at 0.771 kb on + strand at 0.772 kb on - strand at 0.772 kb on - strand at 0.772 kb on - strand at 0.772 kb on - strand at 0.772 kb on - strand at 0.772 kb on - strand at 0.836 kb on + strand, within GFF2602 at 0.836 kb on + strand, within GFF2602 at 0.836 kb on + strand, within GFF2602 at 0.836 kb on + strand, within GFF2602 at 0.836 kb on + strand, within GFF2602 at 0.837 kb on - strand, within GFF2602 at 0.837 kb on - strand, within GFF2602 at 0.837 kb on - strand, within GFF2602 at 0.837 kb on - strand, within GFF2602 at 1.561 kb on - strand at 1.570 kb on + strand at 1.570 kb on + strand at 1.571 kb on - strand at 1.573 kb on - strand at 1.611 kb on - strand at 1.634 kb on - strand at 1.723 kb on - strand, within GFF2603 at 1.723 kb on - strand, within GFF2603 at 1.779 kb on + strand, within GFF2603 at 1.816 kb on + strand, within GFF2603 at 1.816 kb on + strand, within GFF2603 at 1.816 kb on + strand, within GFF2603 at 1.828 kb on + strand, within GFF2603 at 1.828 kb on + strand, within GFF2603 at 1.828 kb on + strand, within GFF2603 at 1.829 kb on - strand, within GFF2603 at 1.829 kb on - strand, within GFF2603 at 1.834 kb on + strand, within GFF2603 at 1.835 kb on - strand, within GFF2603 at 1.912 kb on + strand, within GFF2603 at 1.912 kb on + strand, within GFF2603 at 1.912 kb on + strand, within GFF2603 at 1.912 kb on + strand, within GFF2603 at 1.912 kb on + strand, within GFF2603 at 1.913 kb on - strand, within GFF2603 at 1.913 kb on - strand, within GFF2603 at 1.913 kb on - strand, within GFF2603 at 1.913 kb on - strand, within GFF2603 at 1.913 kb on - strand, within GFF2603 at 1.913 kb on - strand, within GFF2603 at 1.913 kb on - strand, within GFF2603 at 1.913 kb on - strand, within GFF2603 at 1.913 kb on - strand, within GFF2603 at 1.913 kb on - strand, within GFF2603 at 1.914 kb on + strand, within GFF2603 at 1.914 kb on + strand, within GFF2603 at 1.914 kb on + strand, within GFF2603 at 1.914 kb on + strand, within GFF2603 at 1.914 kb on + strand, within GFF2603 at 1.914 kb on + strand, within GFF2603 at 1.915 kb on - strand, within GFF2603 at 1.915 kb on - strand, within GFF2603 at 1.915 kb on - strand, within GFF2603 at 1.915 kb on - strand, within GFF2603 at 1.915 kb on - strand, within GFF2603 at 1.915 kb on - strand, within GFF2603 at 1.917 kb on + strand, within GFF2603 at 1.917 kb on + strand, within GFF2603 at 1.917 kb on + strand, within GFF2603 at 1.918 kb on - strand, within GFF2603 at 2.036 kb on + strand, within GFF2603 at 2.036 kb on + strand, within GFF2603 at 2.036 kb on + strand, within GFF2603 at 2.078 kb on - strand, within GFF2603 at 2.082 kb on + strand at 2.128 kb on + strand at 2.128 kb on + strand at 2.128 kb on + strand at 2.128 kb on + strand at 2.129 kb on - strand at 2.129 kb on - strand at 2.129 kb on - strand at 2.129 kb on - strand at 2.129 kb on - strand at 2.169 kb on + strand at 2.169 kb on + strand at 2.170 kb on - strand at 2.170 kb on - strand at 2.184 kb on + strand at 2.184 kb on + strand at 2.185 kb on - strand at 2.185 kb on - strand at 2.197 kb on - strand at 2.288 kb on - strand at 2.345 kb on + strand, within GFF2604 at 2.345 kb on + strand, within GFF2604 at 2.345 kb on + strand, within GFF2604 at 2.345 kb on + strand, within GFF2604 at 2.345 kb on + strand, within GFF2604 at 2.345 kb on + strand, within GFF2604 at 2.345 kb on + strand, within GFF2604 at 2.345 kb on + strand, within GFF2604 at 2.345 kb on + strand, within GFF2604 at 2.345 kb on + strand, within GFF2604 at 2.345 kb on + strand, within GFF2604 at 2.345 kb on + strand, within GFF2604 at 2.345 kb on + strand, within GFF2604 at 2.345 kb on + strand, within GFF2604 at 2.346 kb on - strand, within GFF2604 at 2.347 kb on + strand, within GFF2604 at 2.347 kb on + strand, within GFF2604 at 2.437 kb on + strand, within GFF2604 at 2.437 kb on + strand, within GFF2604 at 2.437 kb on + strand, within GFF2604 at 2.438 kb on - strand, within GFF2604 at 2.438 kb on - strand, within GFF2604 at 2.458 kb on + strand, within GFF2604 at 2.462 kb on - strand, within GFF2604 at 2.462 kb on - strand, within GFF2604 at 2.462 kb on - strand, within GFF2604 at 2.462 kb on - strand, within GFF2604 at 2.493 kb on + strand, within GFF2604 at 2.509 kb on + strand, within GFF2604 at 2.511 kb on + strand, within GFF2604 at 2.511 kb on + strand, within GFF2604 at 2.511 kb on + strand, within GFF2604 at 2.512 kb on - strand, within GFF2604 at 2.512 kb on - strand, within GFF2604 at 2.521 kb on + strand, within GFF2604 at 2.521 kb on + strand, within GFF2604 at 2.521 kb on + strand, within GFF2604
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 45 + -0.3 45 + -1.3 45 + -0.6 45 + +0.4 45 + +0.0 45 + +0.0 45 + -2.4 58 + -0.0 58 + -0.3 58 + -0.8 58 + +0.0 71 + -0.2 73 + -1.0 73 + -0.5 73 + +1.3 92 + -0.5 92 + -0.9 92 + -0.5 92 + +0.5 92 + -0.3 93 - -0.4 93 - +0.8 93 - -1.0 96 + +0.4 97 - -0.1 97 - -1.8 117 - +0.7 117 - -0.7 193 - +0.0 262 + -2.2 262 + +0.0 333 + -1.0 333 + -0.5 333 + +0.4 334 - -2.0 337 + -0.8 337 + -1.6 337 + -0.8 337 + +0.3 337 + +0.0 337 + -0.3 337 + +0.3 337 + -0.5 337 + -1.2 338 - -0.3 338 - -1.0 338 - -0.4 338 - +0.0 338 - -0.5 430 + -0.3 480 - +0.2 483 + +1.2 483 + -0.7 483 + -1.6 483 + -1.3 483 + -1.0 483 + -0.3 483 + -0.6 483 + -0.7 483 + -0.3 504 + +0.0 511 + -0.8 511 + +0.3 512 - +0.4 512 - -1.0 516 + +1.6 516 + -0.6 517 - +0.3 534 + +0.6 535 - -0.8 535 - +0.2 608 - -0.1 657 + -1.8 657 + +0.6 657 + -0.6 658 - -0.1 690 + -1.1 691 - -1.3 698 - +0.1 701 + +0.6 701 + -2.2 702 - +0.5 709 + -2.4 729 - -0.3 729 - -0.8 734 + +0.6 735 - -0.8 735 - -0.0 771 + -1.5 771 + -3.2 772 - -0.2 772 - +0.3 772 - -0.8 772 - +0.3 772 - -0.1 772 - -1.0 836 + GFF2602 0.12 -4.1 836 + GFF2602 0.12 -3.6 836 + GFF2602 0.12 -2.0 836 + GFF2602 0.12 -1.6 836 + GFF2602 0.12 -4.4 837 - GFF2602 0.12 -1.8 837 - GFF2602 0.12 -2.3 837 - GFF2602 0.12 -3.9 837 - GFF2602 0.12 -1.3 1,561 - -0.1 1,570 + -1.9 1,570 + -0.9 1,571 - -0.2 1,573 - -1.0 1,611 - -1.6 1,634 - -0.1 1,723 - GFF2603 0.25 +0.5 1,723 - GFF2603 0.25 -0.7 1,779 + GFF2603 0.35 -0.2 1,816 + GFF2603 0.42 -1.0 1,816 + GFF2603 0.42 +0.6 1,816 + GFF2603 0.42 -1.0 1,828 + GFF2603 0.44 +1.0 1,828 + GFF2603 0.44 -0.1 1,828 + GFF2603 0.44 +0.0 1,829 - GFF2603 0.44 -0.5 1,829 - GFF2603 0.44 -0.4 1,834 + GFF2603 0.45 +0.1 1,835 - GFF2603 0.45 +0.6 1,912 + GFF2603 0.59 -0.2 1,912 + GFF2603 0.59 +0.6 1,912 + GFF2603 0.59 -3.2 1,912 + GFF2603 0.59 +0.1 1,912 + GFF2603 0.59 -0.2 1,913 - GFF2603 0.59 +0.0 1,913 - GFF2603 0.59 -0.1 1,913 - GFF2603 0.59 -0.8 1,913 - GFF2603 0.59 -0.4 1,913 - GFF2603 0.59 -0.8 1,913 - GFF2603 0.59 -0.3 1,913 - GFF2603 0.59 -1.0 1,913 - GFF2603 0.59 +0.4 1,913 - GFF2603 0.59 -0.3 1,913 - GFF2603 0.59 -0.7 1,914 + GFF2603 0.59 -0.7 1,914 + GFF2603 0.59 +0.7 1,914 + GFF2603 0.59 +0.5 1,914 + GFF2603 0.59 -0.5 1,914 + GFF2603 0.59 +0.3 1,914 + GFF2603 0.59 +0.6 1,915 - GFF2603 0.60 -2.4 1,915 - GFF2603 0.60 +0.1 1,915 - GFF2603 0.60 -0.5 1,915 - GFF2603 0.60 -0.2 1,915 - GFF2603 0.60 +0.6 1,915 - GFF2603 0.60 -0.8 1,917 + GFF2603 0.60 +0.2 1,917 + GFF2603 0.60 +0.6 1,917 + GFF2603 0.60 -0.9 1,918 - GFF2603 0.60 +1.0 2,036 + GFF2603 0.82 -1.0 2,036 + GFF2603 0.82 -0.6 2,036 + GFF2603 0.82 +0.0 2,078 - GFF2603 0.89 -0.6 2,082 + -0.6 2,128 + -0.4 2,128 + -0.3 2,128 + -0.8 2,128 + +0.0 2,129 - -0.4 2,129 - -0.9 2,129 - +0.3 2,129 - +0.6 2,129 - +0.1 2,169 + -1.2 2,169 + +0.7 2,170 - -0.3 2,170 - -0.1 2,184 + +1.0 2,184 + -0.6 2,185 - -0.8 2,185 - +0.8 2,197 - +1.0 2,288 - -0.8 2,345 + GFF2604 0.13 +0.0 2,345 + GFF2604 0.13 +0.4 2,345 + GFF2604 0.13 -0.7 2,345 + GFF2604 0.13 -0.3 2,345 + GFF2604 0.13 -0.6 2,345 + GFF2604 0.13 -1.9 2,345 + GFF2604 0.13 -1.6 2,345 + GFF2604 0.13 -1.1 2,345 + GFF2604 0.13 -0.8 2,345 + GFF2604 0.13 -1.0 2,345 + GFF2604 0.13 +0.4 2,345 + GFF2604 0.13 -1.2 2,345 + GFF2604 0.13 -0.8 2,345 + GFF2604 0.13 -0.2 2,346 - GFF2604 0.13 -0.6 2,347 + GFF2604 0.13 +0.6 2,347 + GFF2604 0.13 +0.2 2,437 + GFF2604 0.20 -1.5 2,437 + GFF2604 0.20 -0.2 2,437 + GFF2604 0.20 -0.3 2,438 - GFF2604 0.20 +0.3 2,438 - GFF2604 0.20 -0.7 2,458 + GFF2604 0.21 +0.7 2,462 - GFF2604 0.22 +1.0 2,462 - GFF2604 0.22 -1.8 2,462 - GFF2604 0.22 -0.5 2,462 - GFF2604 0.22 -0.1 2,493 + GFF2604 0.24 -0.7 2,509 + GFF2604 0.25 -2.0 2,511 + GFF2604 0.25 -0.5 2,511 + GFF2604 0.25 -2.2 2,511 + GFF2604 0.25 -0.8 2,512 - GFF2604 0.25 +0.0 2,512 - GFF2604 0.25 +0.5 2,521 + GFF2604 0.26 -0.7 2,521 + GFF2604 0.26 -1.3 2,521 + GFF2604 0.26 -0.4
Or see this region's nucleotide sequence