Strain Fitness in Methylophilus sp. DMC18 around GFF2578

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2577 and GFF2578 are separated by 45 nucleotidesGFF2578 and GFF2579 are separated by 7 nucleotidesGFF2579 and GFF2580 overlap by 4 nucleotides GFF2577 - hypothetical protein, at 277,853 to 279,481 GFF2577 GFF2578 - putative glycosyltransferase, at 279,527 to 280,504 GFF2578 GFF2579 - hypothetical protein, at 280,512 to 280,898 GFF2579 GFF2580 - Chitooligosaccharide deacetylase, at 280,895 to 281,746 GFF2580 Position (kb) 279 280 281Strain fitness (log2 ratio) -3 -2 -1 0 1at 278.531 kb on - strand, within GFF2577at 278.656 kb on + strand, within GFF2577at 278.656 kb on + strand, within GFF2577at 278.656 kb on + strand, within GFF2577at 278.657 kb on - strand, within GFF2577at 278.660 kb on - strand, within GFF2577at 278.660 kb on - strand, within GFF2577at 278.660 kb on - strand, within GFF2577at 278.687 kb on + strand, within GFF2577at 278.687 kb on + strand, within GFF2577at 278.687 kb on + strand, within GFF2577at 278.687 kb on + strand, within GFF2577at 278.687 kb on + strand, within GFF2577at 278.687 kb on + strand, within GFF2577at 278.687 kb on + strand, within GFF2577at 278.687 kb on + strand, within GFF2577at 278.687 kb on + strand, within GFF2577at 278.687 kb on + strand, within GFF2577at 278.687 kb on + strand, within GFF2577at 278.687 kb on + strand, within GFF2577at 278.687 kb on + strand, within GFF2577at 278.687 kb on + strand, within GFF2577at 278.687 kb on + strand, within GFF2577at 278.688 kb on - strand, within GFF2577at 278.688 kb on - strand, within GFF2577at 278.688 kb on - strand, within GFF2577at 278.688 kb on - strand, within GFF2577at 278.689 kb on + strand, within GFF2577at 278.689 kb on + strand, within GFF2577at 278.690 kb on - strand, within GFF2577at 278.714 kb on + strand, within GFF2577at 278.714 kb on + strand, within GFF2577at 278.715 kb on - strand, within GFF2577at 278.715 kb on - strand, within GFF2577at 278.727 kb on - strand, within GFF2577at 278.727 kb on - strand, within GFF2577at 278.758 kb on - strand, within GFF2577at 278.784 kb on + strand, within GFF2577at 278.797 kb on + strand, within GFF2577at 278.839 kb on + strand, within GFF2577at 278.839 kb on + strand, within GFF2577at 278.839 kb on + strand, within GFF2577at 278.839 kb on + strand, within GFF2577at 278.839 kb on + strand, within GFF2577at 278.839 kb on + strand, within GFF2577at 278.839 kb on + strand, within GFF2577at 278.840 kb on - strand, within GFF2577at 278.840 kb on - strand, within GFF2577at 278.840 kb on - strand, within GFF2577at 278.840 kb on - strand, within GFF2577at 278.843 kb on + strand, within GFF2577at 278.843 kb on + strand, within GFF2577at 278.843 kb on + strand, within GFF2577at 278.843 kb on + strand, within GFF2577at 278.843 kb on + strand, within GFF2577at 278.843 kb on + strand, within GFF2577at 278.843 kb on + strand, within GFF2577at 278.843 kb on + strand, within GFF2577at 278.843 kb on + strand, within GFF2577at 278.843 kb on + strand, within GFF2577at 278.843 kb on + strand, within GFF2577at 278.843 kb on + strand, within GFF2577at 278.843 kb on + strand, within GFF2577at 278.843 kb on + strand, within GFF2577at 278.843 kb on + strand, within GFF2577at 278.843 kb on + strand, within GFF2577at 278.843 kb on + strand, within GFF2577at 278.843 kb on + strand, within GFF2577at 278.843 kb on + strand, within GFF2577at 278.844 kb on - strand, within GFF2577at 278.844 kb on - strand, within GFF2577at 278.844 kb on - strand, within GFF2577at 278.844 kb on - strand, within GFF2577at 278.844 kb on - strand, within GFF2577at 278.844 kb on - strand, within GFF2577at 278.844 kb on - strand, within GFF2577at 278.844 kb on - strand, within GFF2577at 278.844 kb on - strand, within GFF2577at 278.844 kb on - strand, within GFF2577at 278.844 kb on - strand, within GFF2577at 278.844 kb on - strand, within GFF2577at 278.844 kb on - strand, within GFF2577at 278.845 kb on + strand, within GFF2577at 278.845 kb on + strand, within GFF2577at 278.845 kb on + strand, within GFF2577at 278.845 kb on + strand, within GFF2577at 278.845 kb on + strand, within GFF2577at 278.845 kb on + strand, within GFF2577at 278.846 kb on - strand, within GFF2577at 278.846 kb on - strand, within GFF2577at 278.846 kb on - strand, within GFF2577at 278.846 kb on - strand, within GFF2577at 278.906 kb on + strand, within GFF2577at 278.906 kb on + strand, within GFF2577at 278.907 kb on - strand, within GFF2577at 278.907 kb on - strand, within GFF2577at 278.926 kb on + strand, within GFF2577at 278.927 kb on - strand, within GFF2577at 278.932 kb on + strand, within GFF2577at 278.933 kb on - strand, within GFF2577at 278.933 kb on - strand, within GFF2577at 279.079 kb on + strand, within GFF2577at 279.080 kb on - strand, within GFF2577at 279.080 kb on - strand, within GFF2577at 279.098 kb on + strand, within GFF2577at 279.104 kb on + strand, within GFF2577at 279.104 kb on + strand, within GFF2577at 279.105 kb on - strand, within GFF2577at 279.105 kb on - strand, within GFF2577at 279.105 kb on - strand, within GFF2577at 279.105 kb on - strand, within GFF2577at 279.105 kb on - strand, within GFF2577at 279.167 kb on + strand, within GFF2577at 279.239 kb on + strand, within GFF2577at 279.239 kb on + strand, within GFF2577at 279.239 kb on + strand, within GFF2577at 279.240 kb on - strand, within GFF2577at 279.240 kb on - strand, within GFF2577at 279.281 kb on + strand, within GFF2577at 279.282 kb on - strand, within GFF2577at 279.349 kb on + strandat 279.349 kb on + strandat 279.349 kb on + strandat 279.349 kb on + strandat 279.349 kb on + strandat 279.350 kb on - strandat 279.350 kb on - strandat 279.350 kb on - strandat 279.350 kb on - strandat 279.350 kb on - strandat 279.350 kb on - strandat 279.350 kb on - strandat 279.421 kb on - strandat 279.493 kb on + strandat 279.498 kb on + strandat 279.498 kb on + strandat 279.498 kb on + strandat 279.498 kb on + strandat 279.498 kb on + strandat 279.498 kb on + strandat 279.499 kb on - strandat 279.590 kb on + strandat 279.866 kb on + strand, within GFF2578at 279.866 kb on + strand, within GFF2578at 279.866 kb on + strand, within GFF2578at 280.100 kb on + strand, within GFF2578at 280.100 kb on + strand, within GFF2578at 280.100 kb on + strand, within GFF2578at 280.100 kb on + strand, within GFF2578at 280.100 kb on + strand, within GFF2578at 280.101 kb on - strand, within GFF2578at 280.172 kb on + strand, within GFF2578at 280.427 kb on + strandat 280.569 kb on + strand, within GFF2579at 280.569 kb on + strand, within GFF2579at 280.569 kb on + strand, within GFF2579at 280.569 kb on + strand, within GFF2579at 280.570 kb on - strand, within GFF2579at 280.570 kb on - strand, within GFF2579at 280.570 kb on - strand, within GFF2579at 280.570 kb on - strand, within GFF2579at 280.570 kb on - strand, within GFF2579at 280.656 kb on + strand, within GFF2579at 280.656 kb on + strand, within GFF2579at 280.769 kb on - strand, within GFF2579at 280.785 kb on + strand, within GFF2579at 280.785 kb on + strand, within GFF2579at 280.786 kb on - strand, within GFF2579at 280.787 kb on + strand, within GFF2579at 280.787 kb on + strand, within GFF2579at 280.787 kb on + strand, within GFF2579at 280.787 kb on + strand, within GFF2579at 281.347 kb on + strand, within GFF2580at 281.461 kb on - strand, within GFF2580at 281.498 kb on + strand, within GFF2580

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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278,531 - GFF2577 0.42 -0.0
278,656 + GFF2577 0.49 -1.0
278,656 + GFF2577 0.49 -0.9
278,656 + GFF2577 0.49 -0.1
278,657 - GFF2577 0.49 -1.6
278,660 - GFF2577 0.50 +0.1
278,660 - GFF2577 0.50 -0.0
278,660 - GFF2577 0.50 -0.3
278,687 + GFF2577 0.51 -0.6
278,687 + GFF2577 0.51 +0.6
278,687 + GFF2577 0.51 -0.0
278,687 + GFF2577 0.51 -0.0
278,687 + GFF2577 0.51 +0.1
278,687 + GFF2577 0.51 +0.4
278,687 + GFF2577 0.51 -0.0
278,687 + GFF2577 0.51 -1.0
278,687 + GFF2577 0.51 +0.7
278,687 + GFF2577 0.51 -0.6
278,687 + GFF2577 0.51 -0.7
278,687 + GFF2577 0.51 -0.0
278,687 + GFF2577 0.51 -0.0
278,687 + GFF2577 0.51 +0.2
278,687 + GFF2577 0.51 -1.9
278,688 - GFF2577 0.51 -0.2
278,688 - GFF2577 0.51 +0.2
278,688 - GFF2577 0.51 -1.8
278,688 - GFF2577 0.51 -1.5
278,689 + GFF2577 0.51 -1.8
278,689 + GFF2577 0.51 -1.0
278,690 - GFF2577 0.51 -1.1
278,714 + GFF2577 0.53 -0.3
278,714 + GFF2577 0.53 -0.0
278,715 - GFF2577 0.53 -0.8
278,715 - GFF2577 0.53 +0.6
278,727 - GFF2577 0.54 -0.3
278,727 - GFF2577 0.54 -0.3
278,758 - GFF2577 0.56 -0.0
278,784 + GFF2577 0.57 +0.8
278,797 + GFF2577 0.58 -1.5
278,839 + GFF2577 0.61 -0.1
278,839 + GFF2577 0.61 +1.0
278,839 + GFF2577 0.61 -1.6
278,839 + GFF2577 0.61 +0.2
278,839 + GFF2577 0.61 -1.3
278,839 + GFF2577 0.61 -0.0
278,839 + GFF2577 0.61 -1.8
278,840 - GFF2577 0.61 -2.3
278,840 - GFF2577 0.61 +1.0
278,840 - GFF2577 0.61 -1.0
278,840 - GFF2577 0.61 -0.3
278,843 + GFF2577 0.61 -0.5
278,843 + GFF2577 0.61 -0.9
278,843 + GFF2577 0.61 +0.5
278,843 + GFF2577 0.61 -0.3
278,843 + GFF2577 0.61 +0.6
278,843 + GFF2577 0.61 -1.3
278,843 + GFF2577 0.61 -0.3
278,843 + GFF2577 0.61 -0.7
278,843 + GFF2577 0.61 -0.3
278,843 + GFF2577 0.61 -1.0
278,843 + GFF2577 0.61 -0.7
278,843 + GFF2577 0.61 +0.3
278,843 + GFF2577 0.61 +1.5
278,843 + GFF2577 0.61 +1.0
278,843 + GFF2577 0.61 -0.4
278,843 + GFF2577 0.61 +0.4
278,843 + GFF2577 0.61 -0.3
278,843 + GFF2577 0.61 -0.8
278,843 + GFF2577 0.61 -0.1
278,844 - GFF2577 0.61 -0.2
278,844 - GFF2577 0.61 -0.0
278,844 - GFF2577 0.61 -2.8
278,844 - GFF2577 0.61 -1.0
278,844 - GFF2577 0.61 -0.6
278,844 - GFF2577 0.61 +0.3
278,844 - GFF2577 0.61 -0.2
278,844 - GFF2577 0.61 +0.1
278,844 - GFF2577 0.61 +0.1
278,844 - GFF2577 0.61 -0.6
278,844 - GFF2577 0.61 -0.4
278,844 - GFF2577 0.61 -1.6
278,844 - GFF2577 0.61 -0.4
278,845 + GFF2577 0.61 -0.4
278,845 + GFF2577 0.61 -1.0
278,845 + GFF2577 0.61 +0.3
278,845 + GFF2577 0.61 -0.6
278,845 + GFF2577 0.61 -0.6
278,845 + GFF2577 0.61 +0.2
278,846 - GFF2577 0.61 +0.6
278,846 - GFF2577 0.61 +0.3
278,846 - GFF2577 0.61 -1.0
278,846 - GFF2577 0.61 -0.5
278,906 + GFF2577 0.65 +0.7
278,906 + GFF2577 0.65 -0.3
278,907 - GFF2577 0.65 -0.9
278,907 - GFF2577 0.65 -0.9
278,926 + GFF2577 0.66 -2.2
278,927 - GFF2577 0.66 -0.3
278,932 + GFF2577 0.66 +0.3
278,933 - GFF2577 0.66 -0.7
278,933 - GFF2577 0.66 +0.1
279,079 + GFF2577 0.75 +0.8
279,080 - GFF2577 0.75 -1.1
279,080 - GFF2577 0.75 -0.7
279,098 + GFF2577 0.76 -1.6
279,104 + GFF2577 0.77 -0.3
279,104 + GFF2577 0.77 +0.3
279,105 - GFF2577 0.77 -1.0
279,105 - GFF2577 0.77 -0.6
279,105 - GFF2577 0.77 -0.0
279,105 - GFF2577 0.77 +0.1
279,105 - GFF2577 0.77 -0.0
279,167 + GFF2577 0.81 -1.2
279,239 + GFF2577 0.85 -0.2
279,239 + GFF2577 0.85 -0.9
279,239 + GFF2577 0.85 +0.7
279,240 - GFF2577 0.85 -0.7
279,240 - GFF2577 0.85 -0.0
279,281 + GFF2577 0.88 +0.6
279,282 - GFF2577 0.88 +0.7
279,349 + -1.3
279,349 + +0.1
279,349 + -0.5
279,349 + +0.2
279,349 + +0.6
279,350 - -1.1
279,350 - -0.3
279,350 - -0.0
279,350 - -0.5
279,350 - -0.2
279,350 - -0.8
279,350 - -1.3
279,421 - +0.2
279,493 + -1.6
279,498 + -0.6
279,498 + +0.3
279,498 + -0.6
279,498 + -1.1
279,498 + -1.0
279,498 + -1.2
279,499 - -1.3
279,590 + -1.8
279,866 + GFF2578 0.35 -0.6
279,866 + GFF2578 0.35 -0.2
279,866 + GFF2578 0.35 -1.0
280,100 + GFF2578 0.59 -1.8
280,100 + GFF2578 0.59 -2.8
280,100 + GFF2578 0.59 -0.6
280,100 + GFF2578 0.59 +1.0
280,100 + GFF2578 0.59 -0.8
280,101 - GFF2578 0.59 -1.0
280,172 + GFF2578 0.66 -0.6
280,427 + -1.6
280,569 + GFF2579 0.15 -0.8
280,569 + GFF2579 0.15 -0.3
280,569 + GFF2579 0.15 +0.7
280,569 + GFF2579 0.15 -0.0
280,570 - GFF2579 0.15 +0.3
280,570 - GFF2579 0.15 -0.1
280,570 - GFF2579 0.15 +0.6
280,570 - GFF2579 0.15 -1.3
280,570 - GFF2579 0.15 -1.0
280,656 + GFF2579 0.37 +0.3
280,656 + GFF2579 0.37 -0.4
280,769 - GFF2579 0.66 +0.2
280,785 + GFF2579 0.71 -0.0
280,785 + GFF2579 0.71 -0.8
280,786 - GFF2579 0.71 -0.3
280,787 + GFF2579 0.71 -0.0
280,787 + GFF2579 0.71 -0.8
280,787 + GFF2579 0.71 -2.0
280,787 + GFF2579 0.71 -0.3
281,347 + GFF2580 0.53 -1.0
281,461 - GFF2580 0.66 -0.0
281,498 + GFF2580 0.71 -1.3

Or see this region's nucleotide sequence