Strain Fitness in Methylophilus sp. DMC18 around GFF2568

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2567 and GFF2568 are separated by 168 nucleotidesGFF2568 and GFF2569 are separated by 232 nucleotides GFF2567 - Cysteine--tRNA ligase, at 268,140 to 269,588 GFF2567 GFF2568 - Cell division coordinator CpoB, at 269,757 to 270,914 GFF2568 GFF2569 - hypothetical protein, at 271,147 to 272,274 GFF2569 Position (kb) 269 270 271Strain fitness (log2 ratio) -3 -2 -1 0 1at 269.562 kb on - strandat 269.572 kb on - strandat 269.662 kb on - strandat 269.703 kb on - strandat 269.703 kb on - strandat 269.720 kb on + strandat 269.720 kb on + strandat 269.720 kb on + strandat 269.720 kb on + strandat 269.720 kb on + strandat 269.720 kb on + strandat 269.720 kb on + strandat 269.720 kb on + strandat 269.720 kb on + strandat 269.720 kb on + strandat 269.720 kb on + strandat 269.721 kb on - strandat 269.721 kb on - strandat 269.721 kb on - strandat 269.740 kb on + strandat 269.748 kb on + strandat 269.748 kb on + strandat 269.751 kb on + strandat 269.751 kb on + strandat 269.751 kb on + strandat 269.751 kb on + strandat 269.751 kb on + strandat 269.752 kb on - strandat 269.752 kb on - strandat 269.752 kb on - strandat 269.752 kb on - strandat 269.752 kb on - strandat 269.752 kb on - strandat 269.782 kb on + strandat 269.803 kb on + strandat 269.922 kb on + strand, within GFF2568at 269.922 kb on + strand, within GFF2568at 269.923 kb on - strand, within GFF2568at 269.923 kb on - strand, within GFF2568at 269.923 kb on - strand, within GFF2568at 269.960 kb on + strand, within GFF2568at 270.017 kb on + strand, within GFF2568at 270.036 kb on + strand, within GFF2568at 270.037 kb on - strand, within GFF2568at 270.037 kb on - strand, within GFF2568at 270.037 kb on - strand, within GFF2568at 270.037 kb on - strand, within GFF2568at 270.038 kb on + strand, within GFF2568at 270.042 kb on - strand, within GFF2568at 270.057 kb on + strand, within GFF2568at 270.057 kb on + strand, within GFF2568at 270.057 kb on + strand, within GFF2568at 270.057 kb on + strand, within GFF2568at 270.058 kb on - strand, within GFF2568at 270.058 kb on - strand, within GFF2568at 270.058 kb on - strand, within GFF2568at 270.058 kb on - strand, within GFF2568at 270.058 kb on - strand, within GFF2568at 270.059 kb on + strand, within GFF2568at 270.059 kb on + strand, within GFF2568at 270.059 kb on + strand, within GFF2568at 270.060 kb on - strand, within GFF2568at 270.097 kb on - strand, within GFF2568at 270.177 kb on - strand, within GFF2568at 270.180 kb on + strand, within GFF2568at 270.180 kb on + strand, within GFF2568at 270.180 kb on + strand, within GFF2568at 270.180 kb on + strand, within GFF2568at 270.180 kb on + strand, within GFF2568at 270.180 kb on + strand, within GFF2568at 270.180 kb on + strand, within GFF2568at 270.180 kb on + strand, within GFF2568at 270.252 kb on - strand, within GFF2568at 270.266 kb on + strand, within GFF2568at 270.316 kb on + strand, within GFF2568at 270.356 kb on + strand, within GFF2568at 270.356 kb on + strand, within GFF2568at 270.420 kb on - strand, within GFF2568at 270.454 kb on + strand, within GFF2568at 270.454 kb on + strand, within GFF2568at 270.454 kb on + strand, within GFF2568at 270.455 kb on - strand, within GFF2568at 270.463 kb on + strand, within GFF2568at 270.464 kb on - strand, within GFF2568at 270.502 kb on + strand, within GFF2568at 270.539 kb on + strand, within GFF2568at 270.540 kb on - strand, within GFF2568at 270.540 kb on - strand, within GFF2568at 270.540 kb on - strand, within GFF2568at 270.540 kb on - strand, within GFF2568at 270.554 kb on + strand, within GFF2568at 270.554 kb on + strand, within GFF2568at 270.554 kb on + strand, within GFF2568at 270.631 kb on + strand, within GFF2568at 270.651 kb on + strand, within GFF2568at 270.651 kb on + strand, within GFF2568at 270.651 kb on + strand, within GFF2568at 270.652 kb on - strand, within GFF2568at 270.734 kb on + strand, within GFF2568at 270.813 kb on + strandat 270.813 kb on + strandat 270.813 kb on + strandat 270.813 kb on + strandat 270.814 kb on - strandat 270.815 kb on + strandat 270.815 kb on + strandat 270.815 kb on + strandat 270.858 kb on - strandat 270.902 kb on - strandat 271.017 kb on - strandat 271.030 kb on + strandat 271.030 kb on + strandat 271.030 kb on + strandat 271.030 kb on + strandat 271.030 kb on + strandat 271.030 kb on + strandat 271.030 kb on + strandat 271.030 kb on + strandat 271.030 kb on + strandat 271.030 kb on + strandat 271.030 kb on + strandat 271.031 kb on - strandat 271.031 kb on - strandat 271.031 kb on - strandat 271.033 kb on - strandat 271.033 kb on - strandat 271.041 kb on + strandat 271.060 kb on + strandat 271.068 kb on + strandat 271.203 kb on + strandat 271.203 kb on + strandat 271.204 kb on - strandat 271.206 kb on + strandat 271.237 kb on + strandat 271.237 kb on + strandat 271.237 kb on + strandat 271.237 kb on + strandat 271.237 kb on + strandat 271.237 kb on + strandat 271.238 kb on - strandat 271.250 kb on + strandat 271.257 kb on + strandat 271.257 kb on + strandat 271.404 kb on + strand, within GFF2569at 271.408 kb on + strand, within GFF2569at 271.408 kb on + strand, within GFF2569at 271.510 kb on + strand, within GFF2569at 271.510 kb on + strand, within GFF2569at 271.511 kb on - strand, within GFF2569at 271.511 kb on - strand, within GFF2569at 271.546 kb on + strand, within GFF2569at 271.546 kb on + strand, within GFF2569at 271.546 kb on + strand, within GFF2569at 271.546 kb on + strand, within GFF2569at 271.547 kb on - strand, within GFF2569at 271.558 kb on + strand, within GFF2569at 271.558 kb on + strand, within GFF2569at 271.558 kb on + strand, within GFF2569at 271.559 kb on - strand, within GFF2569at 271.559 kb on - strand, within GFF2569at 271.561 kb on + strand, within GFF2569at 271.561 kb on + strand, within GFF2569at 271.562 kb on - strand, within GFF2569at 271.562 kb on - strand, within GFF2569at 271.562 kb on - strand, within GFF2569at 271.562 kb on - strand, within GFF2569at 271.620 kb on + strand, within GFF2569at 271.620 kb on + strand, within GFF2569at 271.621 kb on - strand, within GFF2569at 271.630 kb on + strand, within GFF2569at 271.631 kb on - strand, within GFF2569at 271.712 kb on + strand, within GFF2569at 271.712 kb on + strand, within GFF2569at 271.716 kb on + strand, within GFF2569at 271.717 kb on - strand, within GFF2569at 271.720 kb on + strand, within GFF2569at 271.720 kb on + strand, within GFF2569at 271.720 kb on + strand, within GFF2569at 271.720 kb on + strand, within GFF2569at 271.720 kb on + strand, within GFF2569at 271.721 kb on - strand, within GFF2569at 271.721 kb on - strand, within GFF2569at 271.721 kb on - strand, within GFF2569at 271.721 kb on - strand, within GFF2569at 271.721 kb on - strand, within GFF2569at 271.775 kb on - strand, within GFF2569at 271.775 kb on - strand, within GFF2569at 271.846 kb on - strand, within GFF2569

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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269,562 - -1.3
269,572 - -0.5
269,662 - -1.3
269,703 - -1.0
269,703 - -1.1
269,720 + -0.0
269,720 + -1.0
269,720 + -1.2
269,720 + +1.0
269,720 + -0.4
269,720 + -0.8
269,720 + -0.0
269,720 + -3.1
269,720 + -0.1
269,720 + -0.4
269,720 + -1.0
269,721 - -1.0
269,721 - -2.3
269,721 - -1.0
269,740 + -1.0
269,748 + -0.4
269,748 + -1.8
269,751 + -2.6
269,751 + -0.0
269,751 + -1.0
269,751 + -0.3
269,751 + -0.5
269,752 - -1.3
269,752 - -1.4
269,752 - -1.0
269,752 - -1.8
269,752 - -0.3
269,752 - -0.3
269,782 + -1.0
269,803 + +0.6
269,922 + GFF2568 0.14 +0.4
269,922 + GFF2568 0.14 -0.0
269,923 - GFF2568 0.14 +0.1
269,923 - GFF2568 0.14 -1.0
269,923 - GFF2568 0.14 -1.3
269,960 + GFF2568 0.18 -0.7
270,017 + GFF2568 0.22 -0.8
270,036 + GFF2568 0.24 -0.2
270,037 - GFF2568 0.24 -0.3
270,037 - GFF2568 0.24 -1.6
270,037 - GFF2568 0.24 -0.3
270,037 - GFF2568 0.24 -0.3
270,038 + GFF2568 0.24 -0.7
270,042 - GFF2568 0.25 -0.3
270,057 + GFF2568 0.26 -0.8
270,057 + GFF2568 0.26 -2.2
270,057 + GFF2568 0.26 +0.4
270,057 + GFF2568 0.26 +0.4
270,058 - GFF2568 0.26 -0.3
270,058 - GFF2568 0.26 -1.1
270,058 - GFF2568 0.26 -1.0
270,058 - GFF2568 0.26 -1.6
270,058 - GFF2568 0.26 -1.3
270,059 + GFF2568 0.26 +0.6
270,059 + GFF2568 0.26 +0.4
270,059 + GFF2568 0.26 -0.0
270,060 - GFF2568 0.26 -0.6
270,097 - GFF2568 0.29 -1.8
270,177 - GFF2568 0.36 -2.0
270,180 + GFF2568 0.37 -0.0
270,180 + GFF2568 0.37 -0.8
270,180 + GFF2568 0.37 +0.6
270,180 + GFF2568 0.37 -1.0
270,180 + GFF2568 0.37 -1.1
270,180 + GFF2568 0.37 -1.1
270,180 + GFF2568 0.37 -1.0
270,180 + GFF2568 0.37 -2.0
270,252 - GFF2568 0.43 +0.7
270,266 + GFF2568 0.44 +1.0
270,316 + GFF2568 0.48 -1.6
270,356 + GFF2568 0.52 -0.3
270,356 + GFF2568 0.52 +0.1
270,420 - GFF2568 0.57 -1.6
270,454 + GFF2568 0.60 -1.3
270,454 + GFF2568 0.60 -0.8
270,454 + GFF2568 0.60 -0.3
270,455 - GFF2568 0.60 -0.3
270,463 + GFF2568 0.61 -1.6
270,464 - GFF2568 0.61 -2.2
270,502 + GFF2568 0.64 -1.3
270,539 + GFF2568 0.68 +0.2
270,540 - GFF2568 0.68 -1.3
270,540 - GFF2568 0.68 +0.2
270,540 - GFF2568 0.68 -0.6
270,540 - GFF2568 0.68 -0.3
270,554 + GFF2568 0.69 -0.9
270,554 + GFF2568 0.69 +0.8
270,554 + GFF2568 0.69 -1.2
270,631 + GFF2568 0.75 -1.0
270,651 + GFF2568 0.77 -1.6
270,651 + GFF2568 0.77 -0.9
270,651 + GFF2568 0.77 -0.3
270,652 - GFF2568 0.77 -1.6
270,734 + GFF2568 0.84 -0.2
270,813 + -1.2
270,813 + -0.7
270,813 + +0.7
270,813 + -0.6
270,814 - +0.3
270,815 + -2.2
270,815 + -1.2
270,815 + +0.3
270,858 - -0.4
270,902 - -0.3
271,017 - +0.8
271,030 + -0.5
271,030 + -1.0
271,030 + -0.9
271,030 + -0.5
271,030 + -0.0
271,030 + +0.8
271,030 + -0.8
271,030 + -0.6
271,030 + -1.2
271,030 + -2.2
271,030 + -0.2
271,031 - -1.5
271,031 - -0.4
271,031 - -0.3
271,033 - -0.9
271,033 - -1.0
271,041 + +0.6
271,060 + -0.8
271,068 + -0.1
271,203 + -1.0
271,203 + +0.2
271,204 - -1.6
271,206 + -0.3
271,237 + -1.0
271,237 + -1.7
271,237 + -1.8
271,237 + -1.0
271,237 + -1.3
271,237 + -0.0
271,238 - +0.4
271,250 + -1.6
271,257 + -1.6
271,257 + -1.2
271,404 + GFF2569 0.23 -1.0
271,408 + GFF2569 0.23 -2.7
271,408 + GFF2569 0.23 +0.3
271,510 + GFF2569 0.32 +0.2
271,510 + GFF2569 0.32 -0.6
271,511 - GFF2569 0.32 -1.0
271,511 - GFF2569 0.32 -0.4
271,546 + GFF2569 0.35 -1.6
271,546 + GFF2569 0.35 -0.0
271,546 + GFF2569 0.35 -1.0
271,546 + GFF2569 0.35 -1.2
271,547 - GFF2569 0.35 -1.3
271,558 + GFF2569 0.36 -1.8
271,558 + GFF2569 0.36 -1.0
271,558 + GFF2569 0.36 -2.5
271,559 - GFF2569 0.37 -1.6
271,559 - GFF2569 0.37 -1.0
271,561 + GFF2569 0.37 -1.3
271,561 + GFF2569 0.37 +0.3
271,562 - GFF2569 0.37 -1.6
271,562 - GFF2569 0.37 -1.0
271,562 - GFF2569 0.37 -1.0
271,562 - GFF2569 0.37 -1.6
271,620 + GFF2569 0.42 -0.3
271,620 + GFF2569 0.42 +0.1
271,621 - GFF2569 0.42 -1.0
271,630 + GFF2569 0.43 -1.6
271,631 - GFF2569 0.43 +0.6
271,712 + GFF2569 0.50 -0.2
271,712 + GFF2569 0.50 +1.3
271,716 + GFF2569 0.50 -1.0
271,717 - GFF2569 0.51 +0.4
271,720 + GFF2569 0.51 -0.3
271,720 + GFF2569 0.51 -0.0
271,720 + GFF2569 0.51 -1.0
271,720 + GFF2569 0.51 -0.8
271,720 + GFF2569 0.51 -0.6
271,721 - GFF2569 0.51 -0.6
271,721 - GFF2569 0.51 -1.0
271,721 - GFF2569 0.51 -0.0
271,721 - GFF2569 0.51 -1.8
271,721 - GFF2569 0.51 -0.7
271,775 - GFF2569 0.56 -0.2
271,775 - GFF2569 0.56 -0.2
271,846 - GFF2569 0.62 -0.0

Or see this region's nucleotide sequence