Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2564 and GFF2565 are separated by 19 nucleotides GFF2565 and GFF2566 are separated by 116 nucleotides GFF2566 and GFF2567 are separated by 37 nucleotides
GFF2564 - putative ATP-dependent DNA helicase YoaA, at 264,392 to 266,338
GFF2564
GFF2565 - Peptidyl-tRNA hydrolase ArfB, at 266,358 to 266,759
GFF2565
GFF2566 - Arginine biosynthesis bifunctional protein ArgJ, at 266,876 to 268,102
GFF2566
GFF2567 - Cysteine--tRNA ligase, at 268,140 to 269,588
GFF2567
Position (kb) 266
267
268
269 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 265.892 kb on + strand, within GFF2564 at 266.043 kb on + strand, within GFF2564 at 266.043 kb on + strand, within GFF2564 at 266.043 kb on + strand, within GFF2564 at 266.044 kb on - strand, within GFF2564 at 266.120 kb on - strand, within GFF2564 at 266.126 kb on + strand, within GFF2564 at 266.126 kb on + strand, within GFF2564 at 266.138 kb on + strand, within GFF2564 at 266.139 kb on - strand, within GFF2564 at 266.139 kb on - strand, within GFF2564 at 266.139 kb on - strand, within GFF2564 at 266.149 kb on + strand at 266.150 kb on - strand at 266.382 kb on + strand at 266.382 kb on + strand at 266.382 kb on + strand at 266.382 kb on + strand at 266.383 kb on - strand at 266.383 kb on - strand at 266.384 kb on + strand at 266.384 kb on + strand at 266.384 kb on + strand at 266.384 kb on + strand at 266.650 kb on + strand, within GFF2565 at 266.724 kb on - strand at 266.757 kb on + strand at 266.757 kb on + strand at 266.757 kb on + strand at 266.758 kb on - strand at 266.758 kb on - strand at 266.758 kb on - strand at 266.875 kb on - strand at 266.877 kb on + strand at 266.877 kb on + strand at 266.877 kb on + strand at 266.877 kb on + strand at 266.877 kb on + strand at 266.878 kb on - strand at 266.878 kb on - strand at 266.878 kb on - strand at 266.886 kb on + strand at 266.886 kb on + strand at 266.886 kb on + strand at 266.903 kb on + strand at 266.903 kb on + strand at 266.903 kb on + strand at 266.904 kb on - strand at 266.904 kb on - strand at 266.904 kb on - strand at 266.904 kb on - strand at 266.904 kb on - strand at 266.904 kb on - strand at 266.904 kb on - strand at 266.907 kb on + strand at 266.907 kb on + strand at 266.907 kb on + strand at 266.907 kb on + strand at 266.908 kb on - strand at 266.908 kb on - strand at 266.908 kb on - strand at 266.913 kb on + strand at 266.914 kb on - strand at 266.933 kb on + strand at 266.933 kb on + strand at 266.934 kb on - strand at 266.934 kb on - strand at 266.964 kb on - strand at 266.972 kb on + strand at 266.973 kb on - strand at 267.021 kb on + strand, within GFF2566 at 267.021 kb on + strand, within GFF2566 at 267.021 kb on + strand, within GFF2566 at 267.022 kb on - strand, within GFF2566 at 267.022 kb on - strand, within GFF2566 at 267.022 kb on - strand, within GFF2566 at 267.022 kb on - strand, within GFF2566 at 267.022 kb on - strand, within GFF2566 at 267.022 kb on - strand, within GFF2566 at 267.111 kb on + strand, within GFF2566 at 267.196 kb on - strand, within GFF2566 at 267.513 kb on + strand, within GFF2566 at 267.513 kb on + strand, within GFF2566 at 267.513 kb on + strand, within GFF2566 at 267.513 kb on + strand, within GFF2566 at 267.513 kb on + strand, within GFF2566 at 267.514 kb on - strand, within GFF2566 at 267.514 kb on - strand, within GFF2566 at 267.594 kb on - strand, within GFF2566 at 267.594 kb on - strand, within GFF2566 at 267.613 kb on + strand, within GFF2566 at 267.613 kb on + strand, within GFF2566 at 267.613 kb on + strand, within GFF2566 at 267.659 kb on + strand, within GFF2566 at 267.667 kb on + strand, within GFF2566 at 267.668 kb on - strand, within GFF2566 at 267.677 kb on + strand, within GFF2566 at 267.677 kb on + strand, within GFF2566 at 267.708 kb on - strand, within GFF2566 at 267.708 kb on - strand, within GFF2566 at 267.779 kb on - strand, within GFF2566 at 267.802 kb on + strand, within GFF2566 at 267.803 kb on - strand, within GFF2566 at 267.911 kb on - strand, within GFF2566 at 268.021 kb on + strand at 268.021 kb on + strand at 268.021 kb on + strand at 268.021 kb on + strand at 268.022 kb on - strand at 268.064 kb on + strand at 268.124 kb on - strand at 268.137 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 265,892 + GFF2564 0.77 +0.7 266,043 + GFF2564 0.85 +0.4 266,043 + GFF2564 0.85 -0.0 266,043 + GFF2564 0.85 -0.4 266,044 - GFF2564 0.85 -0.8 266,120 - GFF2564 0.89 +0.4 266,126 + GFF2564 0.89 -0.3 266,126 + GFF2564 0.89 -0.0 266,138 + GFF2564 0.90 -0.7 266,139 - GFF2564 0.90 +0.7 266,139 - GFF2564 0.90 -0.0 266,139 - GFF2564 0.90 -1.6 266,149 + -0.5 266,150 - -0.9 266,382 + +0.6 266,382 + -0.3 266,382 + +0.8 266,382 + +0.3 266,383 - -0.1 266,383 - +0.1 266,384 + -1.3 266,384 + -2.2 266,384 + -0.3 266,384 + +0.8 266,650 + GFF2565 0.73 -1.6 266,724 - -1.3 266,757 + -0.0 266,757 + -1.6 266,757 + -1.6 266,758 - -0.3 266,758 - -2.0 266,758 - +0.5 266,875 - -0.3 266,877 + -1.9 266,877 + -1.8 266,877 + -0.0 266,877 + +0.2 266,877 + -0.3 266,878 - -0.1 266,878 - -0.4 266,878 - -1.0 266,886 + -1.0 266,886 + -1.0 266,886 + -0.3 266,903 + -0.4 266,903 + -0.6 266,903 + -0.6 266,904 - +0.1 266,904 - -0.1 266,904 - -2.2 266,904 - -2.7 266,904 - +0.2 266,904 - -1.6 266,904 - -0.8 266,907 + -0.9 266,907 + -2.0 266,907 + -0.8 266,907 + -0.4 266,908 - -0.4 266,908 - -2.0 266,908 - -0.7 266,913 + +0.2 266,914 - -0.3 266,933 + -1.0 266,933 + -0.4 266,934 - -0.4 266,934 - -1.0 266,964 - -1.9 266,972 + -2.1 266,973 - -1.3 267,021 + GFF2566 0.12 -3.1 267,021 + GFF2566 0.12 -1.9 267,021 + GFF2566 0.12 -0.0 267,022 - GFF2566 0.12 -1.3 267,022 - GFF2566 0.12 -1.2 267,022 - GFF2566 0.12 -0.2 267,022 - GFF2566 0.12 -0.3 267,022 - GFF2566 0.12 -1.3 267,022 - GFF2566 0.12 -1.3 267,111 + GFF2566 0.19 -1.0 267,196 - GFF2566 0.26 -1.5 267,513 + GFF2566 0.52 -1.9 267,513 + GFF2566 0.52 +0.6 267,513 + GFF2566 0.52 -1.3 267,513 + GFF2566 0.52 -2.3 267,513 + GFF2566 0.52 -2.0 267,514 - GFF2566 0.52 -1.0 267,514 - GFF2566 0.52 -1.8 267,594 - GFF2566 0.59 -1.3 267,594 - GFF2566 0.59 -1.0 267,613 + GFF2566 0.60 -2.5 267,613 + GFF2566 0.60 -1.6 267,613 + GFF2566 0.60 -1.3 267,659 + GFF2566 0.64 -0.2 267,667 + GFF2566 0.64 -2.2 267,668 - GFF2566 0.65 -1.8 267,677 + GFF2566 0.65 -0.4 267,677 + GFF2566 0.65 -2.8 267,708 - GFF2566 0.68 -1.0 267,708 - GFF2566 0.68 -1.3 267,779 - GFF2566 0.74 -0.8 267,802 + GFF2566 0.75 -1.8 267,803 - GFF2566 0.76 -1.6 267,911 - GFF2566 0.84 -1.6 268,021 + -1.3 268,021 + -1.2 268,021 + -0.6 268,021 + -0.0 268,022 - -1.1 268,064 + -0.2 268,124 - -0.8 268,137 + -1.3
Or see this region's nucleotide sequence