Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2447 and GFF2448 are separated by 125 nucleotides GFF2448 and GFF2449 are separated by 79 nucleotides GFF2449 and GFF2450 are separated by 92 nucleotides GFF2450 and GFF2451 are separated by 12 nucleotides
GFF2447 - hypothetical protein, at 148,473 to 148,760
GFF2447
GFF2448 - hypothetical protein, at 148,886 to 149,455
GFF2448
GFF2449 - hypothetical protein, at 149,535 to 149,891
GFF2449
GFF2450 - Ribosomal RNA small subunit methyltransferase I, at 149,984 to 150,841
GFF2450
GFF2451 - Dihydroorotase, at 150,854 to 151,888
GFF2451
Position (kb) 149
150 Strain fitness (log2 ratio) -2
-1
0
1
2 at 148.572 kb on - strand, within GFF2447 at 148.572 kb on - strand, within GFF2447 at 148.580 kb on + strand, within GFF2447 at 148.599 kb on + strand, within GFF2447 at 148.600 kb on - strand, within GFF2447 at 148.627 kb on + strand, within GFF2447 at 148.627 kb on + strand, within GFF2447 at 148.636 kb on + strand, within GFF2447 at 148.669 kb on + strand, within GFF2447 at 148.669 kb on + strand, within GFF2447 at 148.669 kb on + strand, within GFF2447 at 148.669 kb on + strand, within GFF2447 at 148.669 kb on + strand, within GFF2447 at 148.670 kb on - strand, within GFF2447 at 148.670 kb on - strand, within GFF2447 at 148.670 kb on - strand, within GFF2447 at 148.682 kb on + strand, within GFF2447 at 148.682 kb on + strand, within GFF2447 at 148.682 kb on + strand, within GFF2447 at 148.682 kb on + strand, within GFF2447 at 148.683 kb on - strand, within GFF2447 at 148.683 kb on - strand, within GFF2447 at 148.683 kb on - strand, within GFF2447 at 148.683 kb on - strand, within GFF2447 at 148.683 kb on - strand, within GFF2447 at 148.683 kb on - strand, within GFF2447 at 148.683 kb on - strand, within GFF2447 at 148.740 kb on - strand at 148.743 kb on - strand at 148.772 kb on - strand at 148.785 kb on + strand at 148.785 kb on + strand at 148.785 kb on + strand at 148.785 kb on + strand at 148.785 kb on + strand at 148.786 kb on - strand at 148.786 kb on - strand at 148.786 kb on - strand at 148.786 kb on - strand at 148.786 kb on - strand at 148.786 kb on - strand at 148.786 kb on - strand at 148.786 kb on - strand at 148.786 kb on - strand at 148.789 kb on - strand at 148.789 kb on - strand at 148.806 kb on - strand at 148.811 kb on + strand at 148.812 kb on - strand at 148.829 kb on + strand at 148.829 kb on + strand at 148.830 kb on - strand at 148.830 kb on - strand at 148.830 kb on - strand at 148.887 kb on + strand at 148.887 kb on + strand at 148.887 kb on + strand at 148.887 kb on + strand at 148.888 kb on - strand at 148.888 kb on - strand at 148.888 kb on - strand at 148.888 kb on - strand at 148.888 kb on - strand at 148.888 kb on - strand at 148.888 kb on - strand at 148.888 kb on - strand at 148.894 kb on + strand at 148.894 kb on + strand at 148.894 kb on + strand at 148.894 kb on + strand at 148.895 kb on - strand at 148.895 kb on - strand at 148.895 kb on - strand at 148.895 kb on - strand at 148.895 kb on - strand at 148.895 kb on - strand at 148.895 kb on - strand at 148.895 kb on - strand at 148.896 kb on + strand at 149.082 kb on + strand, within GFF2448 at 149.082 kb on + strand, within GFF2448 at 149.082 kb on + strand, within GFF2448 at 149.082 kb on + strand, within GFF2448 at 149.083 kb on - strand, within GFF2448 at 149.083 kb on - strand, within GFF2448 at 149.083 kb on - strand, within GFF2448 at 149.083 kb on - strand, within GFF2448 at 149.083 kb on - strand, within GFF2448 at 149.083 kb on - strand, within GFF2448 at 149.083 kb on - strand, within GFF2448 at 149.083 kb on - strand, within GFF2448 at 149.083 kb on - strand, within GFF2448 at 149.083 kb on - strand, within GFF2448 at 149.083 kb on - strand, within GFF2448 at 149.083 kb on - strand, within GFF2448 at 149.083 kb on - strand, within GFF2448 at 149.083 kb on - strand, within GFF2448 at 149.107 kb on + strand, within GFF2448 at 149.107 kb on + strand, within GFF2448 at 149.108 kb on - strand, within GFF2448 at 149.108 kb on - strand, within GFF2448 at 149.123 kb on + strand, within GFF2448 at 149.124 kb on - strand, within GFF2448 at 149.129 kb on + strand, within GFF2448 at 149.141 kb on + strand, within GFF2448 at 149.141 kb on + strand, within GFF2448 at 149.141 kb on + strand, within GFF2448 at 149.141 kb on + strand, within GFF2448 at 149.141 kb on + strand, within GFF2448 at 149.142 kb on - strand, within GFF2448 at 149.142 kb on - strand, within GFF2448 at 149.142 kb on - strand, within GFF2448 at 149.142 kb on - strand, within GFF2448 at 149.142 kb on - strand, within GFF2448 at 149.238 kb on + strand, within GFF2448 at 149.238 kb on + strand, within GFF2448 at 149.239 kb on - strand, within GFF2448 at 149.239 kb on - strand, within GFF2448 at 149.239 kb on - strand, within GFF2448 at 149.239 kb on - strand, within GFF2448 at 149.254 kb on + strand, within GFF2448 at 149.254 kb on + strand, within GFF2448 at 149.254 kb on + strand, within GFF2448 at 149.255 kb on - strand, within GFF2448 at 149.255 kb on - strand, within GFF2448 at 149.255 kb on - strand, within GFF2448 at 149.255 kb on - strand, within GFF2448 at 149.255 kb on - strand, within GFF2448 at 149.272 kb on + strand, within GFF2448 at 149.272 kb on + strand, within GFF2448 at 149.273 kb on - strand, within GFF2448 at 149.273 kb on - strand, within GFF2448 at 149.273 kb on - strand, within GFF2448 at 149.273 kb on - strand, within GFF2448 at 149.273 kb on - strand, within GFF2448 at 149.274 kb on + strand, within GFF2448 at 149.274 kb on + strand, within GFF2448 at 149.274 kb on + strand, within GFF2448 at 149.274 kb on + strand, within GFF2448 at 149.274 kb on + strand, within GFF2448 at 149.275 kb on - strand, within GFF2448 at 149.275 kb on - strand, within GFF2448 at 149.275 kb on - strand, within GFF2448 at 149.275 kb on - strand, within GFF2448 at 149.325 kb on + strand, within GFF2448 at 149.325 kb on + strand, within GFF2448 at 149.325 kb on + strand, within GFF2448 at 149.325 kb on + strand, within GFF2448 at 149.326 kb on - strand, within GFF2448 at 149.421 kb on - strand at 149.421 kb on - strand at 149.421 kb on - strand at 149.421 kb on - strand at 149.424 kb on - strand at 149.475 kb on + strand at 149.476 kb on - strand at 149.497 kb on + strand at 149.498 kb on - strand at 149.498 kb on - strand at 149.520 kb on - strand at 149.527 kb on + strand at 149.536 kb on + strand at 149.536 kb on + strand at 149.641 kb on + strand, within GFF2449 at 149.642 kb on - strand, within GFF2449 at 149.644 kb on + strand, within GFF2449 at 149.644 kb on + strand, within GFF2449 at 149.645 kb on - strand, within GFF2449 at 149.687 kb on + strand, within GFF2449 at 149.688 kb on - strand, within GFF2449 at 149.688 kb on - strand, within GFF2449 at 149.688 kb on - strand, within GFF2449 at 149.688 kb on - strand, within GFF2449 at 149.724 kb on + strand, within GFF2449 at 149.725 kb on - strand, within GFF2449 at 149.736 kb on + strand, within GFF2449 at 149.736 kb on + strand, within GFF2449 at 149.737 kb on - strand, within GFF2449 at 149.737 kb on - strand, within GFF2449 at 149.737 kb on - strand, within GFF2449 at 149.750 kb on + strand, within GFF2449 at 149.891 kb on + strand at 149.909 kb on - strand at 149.909 kb on - strand at 149.909 kb on - strand at 149.933 kb on + strand at 149.933 kb on + strand at 149.934 kb on - strand at 149.934 kb on - strand at 149.972 kb on + strand at 149.978 kb on - strand at 150.003 kb on + strand at 150.003 kb on + strand at 150.003 kb on + strand at 150.003 kb on + strand at 150.003 kb on + strand at 150.003 kb on + strand at 150.003 kb on + strand at 150.004 kb on - strand at 150.004 kb on - strand at 150.004 kb on - strand at 150.005 kb on + strand at 150.005 kb on + strand at 150.005 kb on + strand at 150.005 kb on + strand at 150.005 kb on + strand at 150.005 kb on + strand at 150.005 kb on + strand at 150.005 kb on + strand at 150.005 kb on + strand at 150.005 kb on + strand at 150.005 kb on + strand at 150.005 kb on + strand at 150.005 kb on + strand at 150.006 kb on - strand at 150.006 kb on - strand at 150.006 kb on - strand at 150.006 kb on - strand at 150.006 kb on - strand at 150.006 kb on - strand at 150.009 kb on + strand at 150.009 kb on + strand at 150.009 kb on + strand at 150.009 kb on + strand at 150.009 kb on + strand at 150.009 kb on + strand at 150.009 kb on + strand at 150.009 kb on + strand at 150.009 kb on + strand at 150.009 kb on + strand at 150.009 kb on + strand at 150.009 kb on + strand at 150.009 kb on + strand at 150.009 kb on - strand at 150.010 kb on - strand at 150.010 kb on - strand at 150.010 kb on - strand at 150.010 kb on - strand at 150.010 kb on - strand at 150.010 kb on - strand at 150.022 kb on + strand at 150.106 kb on + strand, within GFF2450 at 150.106 kb on + strand, within GFF2450 at 150.106 kb on + strand, within GFF2450 at 150.107 kb on - strand, within GFF2450 at 150.120 kb on + strand, within GFF2450 at 150.156 kb on + strand, within GFF2450 at 150.157 kb on - strand, within GFF2450 at 150.279 kb on + strand, within GFF2450 at 150.279 kb on + strand, within GFF2450 at 150.380 kb on + strand, within GFF2450 at 150.380 kb on + strand, within GFF2450 at 150.429 kb on + strand, within GFF2450 at 150.485 kb on - strand, within GFF2450 at 150.576 kb on + strand, within GFF2450 at 150.576 kb on + strand, within GFF2450 at 150.576 kb on + strand, within GFF2450 at 150.576 kb on + strand, within GFF2450 at 150.576 kb on + strand, within GFF2450 at 150.576 kb on + strand, within GFF2450 at 150.576 kb on + strand, within GFF2450 at 150.577 kb on - strand, within GFF2450 at 150.577 kb on - strand, within GFF2450 at 150.577 kb on - strand, within GFF2450 at 150.657 kb on + strand, within GFF2450 at 150.657 kb on + strand, within GFF2450 at 150.658 kb on - strand, within GFF2450 at 150.658 kb on - strand, within GFF2450 at 150.658 kb on - strand, within GFF2450 at 150.658 kb on - strand, within GFF2450 at 150.658 kb on - strand, within GFF2450 at 150.705 kb on + strand, within GFF2450 at 150.705 kb on + strand, within GFF2450 at 150.726 kb on + strand, within GFF2450 at 150.797 kb on + strand at 150.797 kb on + strand at 150.797 kb on + strand at 150.798 kb on - strand at 150.830 kb on - strand at 150.839 kb on + strand at 150.839 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 148,572 - GFF2447 0.34 -1.3 148,572 - GFF2447 0.34 +0.3 148,580 + GFF2447 0.37 +0.7 148,599 + GFF2447 0.44 -1.3 148,600 - GFF2447 0.44 -1.3 148,627 + GFF2447 0.53 -0.6 148,627 + GFF2447 0.53 -1.0 148,636 + GFF2447 0.57 -0.0 148,669 + GFF2447 0.68 -1.2 148,669 + GFF2447 0.68 -1.0 148,669 + GFF2447 0.68 +1.0 148,669 + GFF2447 0.68 +0.2 148,669 + GFF2447 0.68 -1.0 148,670 - GFF2447 0.68 +1.3 148,670 - GFF2447 0.68 +0.2 148,670 - GFF2447 0.68 +0.1 148,682 + GFF2447 0.73 -0.3 148,682 + GFF2447 0.73 +0.3 148,682 + GFF2447 0.73 +0.7 148,682 + GFF2447 0.73 -1.3 148,683 - GFF2447 0.73 -0.3 148,683 - GFF2447 0.73 -0.1 148,683 - GFF2447 0.73 -1.2 148,683 - GFF2447 0.73 -1.0 148,683 - GFF2447 0.73 -1.3 148,683 - GFF2447 0.73 -0.0 148,683 - GFF2447 0.73 -1.0 148,740 - -0.0 148,743 - +0.6 148,772 - -0.0 148,785 + -1.3 148,785 + -1.6 148,785 + -0.9 148,785 + -1.4 148,785 + +0.2 148,786 - -1.0 148,786 - -0.4 148,786 - +0.6 148,786 - -0.8 148,786 - -0.8 148,786 - +0.3 148,786 - -2.2 148,786 - -1.1 148,786 - +0.1 148,789 - -1.0 148,789 - -0.1 148,806 - -0.1 148,811 + -0.9 148,812 - +0.7 148,829 + +0.1 148,829 + -1.3 148,830 - -0.2 148,830 - -0.1 148,830 - +0.3 148,887 + +0.4 148,887 + -2.5 148,887 + -0.0 148,887 + -0.7 148,888 - -0.9 148,888 - +0.8 148,888 - -1.8 148,888 - -0.9 148,888 - +0.3 148,888 - +0.3 148,888 - -0.9 148,888 - +0.1 148,894 + -0.8 148,894 + -0.5 148,894 + -1.1 148,894 + -0.2 148,895 - +0.1 148,895 - -0.0 148,895 - -1.8 148,895 - -2.3 148,895 - -0.8 148,895 - +0.8 148,895 - +2.0 148,895 - +0.3 148,896 + -0.0 149,082 + GFF2448 0.34 +0.3 149,082 + GFF2448 0.34 -1.0 149,082 + GFF2448 0.34 -0.6 149,082 + GFF2448 0.34 -0.0 149,083 - GFF2448 0.35 -0.2 149,083 - GFF2448 0.35 -1.0 149,083 - GFF2448 0.35 -0.0 149,083 - GFF2448 0.35 -1.6 149,083 - GFF2448 0.35 -1.0 149,083 - GFF2448 0.35 -0.6 149,083 - GFF2448 0.35 -0.5 149,083 - GFF2448 0.35 -0.6 149,083 - GFF2448 0.35 -0.3 149,083 - GFF2448 0.35 -1.0 149,083 - GFF2448 0.35 -0.0 149,083 - GFF2448 0.35 +0.9 149,083 - GFF2448 0.35 -0.9 149,083 - GFF2448 0.35 -0.1 149,107 + GFF2448 0.39 -0.6 149,107 + GFF2448 0.39 -0.5 149,108 - GFF2448 0.39 +1.2 149,108 - GFF2448 0.39 -0.6 149,123 + GFF2448 0.42 -0.2 149,124 - GFF2448 0.42 -0.3 149,129 + GFF2448 0.43 -1.2 149,141 + GFF2448 0.45 -1.7 149,141 + GFF2448 0.45 -1.3 149,141 + GFF2448 0.45 -1.0 149,141 + GFF2448 0.45 -0.1 149,141 + GFF2448 0.45 -0.3 149,142 - GFF2448 0.45 +0.7 149,142 - GFF2448 0.45 -1.6 149,142 - GFF2448 0.45 -0.6 149,142 - GFF2448 0.45 -1.8 149,142 - GFF2448 0.45 -0.0 149,238 + GFF2448 0.62 -0.6 149,238 + GFF2448 0.62 -1.3 149,239 - GFF2448 0.62 -2.7 149,239 - GFF2448 0.62 +0.8 149,239 - GFF2448 0.62 -0.0 149,239 - GFF2448 0.62 -0.9 149,254 + GFF2448 0.65 -1.0 149,254 + GFF2448 0.65 -1.2 149,254 + GFF2448 0.65 +0.4 149,255 - GFF2448 0.65 +1.0 149,255 - GFF2448 0.65 -1.0 149,255 - GFF2448 0.65 -0.1 149,255 - GFF2448 0.65 -0.5 149,255 - GFF2448 0.65 -1.8 149,272 + GFF2448 0.68 -1.8 149,272 + GFF2448 0.68 +0.6 149,273 - GFF2448 0.68 -0.0 149,273 - GFF2448 0.68 -1.0 149,273 - GFF2448 0.68 -0.3 149,273 - GFF2448 0.68 -1.2 149,273 - GFF2448 0.68 -2.0 149,274 + GFF2448 0.68 -1.0 149,274 + GFF2448 0.68 -0.6 149,274 + GFF2448 0.68 -0.8 149,274 + GFF2448 0.68 -0.3 149,274 + GFF2448 0.68 -0.1 149,275 - GFF2448 0.68 +0.6 149,275 - GFF2448 0.68 -1.2 149,275 - GFF2448 0.68 +0.1 149,275 - GFF2448 0.68 -1.2 149,325 + GFF2448 0.77 -0.2 149,325 + GFF2448 0.77 -0.0 149,325 + GFF2448 0.77 -1.0 149,325 + GFF2448 0.77 -1.6 149,326 - GFF2448 0.77 -0.3 149,421 - +0.3 149,421 - -0.3 149,421 - +0.1 149,421 - -1.0 149,424 - -0.8 149,475 + -1.1 149,476 - -0.4 149,497 + -0.9 149,498 - -0.0 149,498 - -2.3 149,520 - -1.2 149,527 + -0.2 149,536 + +0.2 149,536 + -0.5 149,641 + GFF2449 0.30 -1.0 149,642 - GFF2449 0.30 +0.1 149,644 + GFF2449 0.31 -0.0 149,644 + GFF2449 0.31 -0.9 149,645 - GFF2449 0.31 +1.0 149,687 + GFF2449 0.43 -1.7 149,688 - GFF2449 0.43 -1.0 149,688 - GFF2449 0.43 -0.8 149,688 - GFF2449 0.43 -2.7 149,688 - GFF2449 0.43 -0.6 149,724 + GFF2449 0.53 -1.6 149,725 - GFF2449 0.53 -1.3 149,736 + GFF2449 0.56 +0.2 149,736 + GFF2449 0.56 -1.0 149,737 - GFF2449 0.57 -1.3 149,737 - GFF2449 0.57 -0.7 149,737 - GFF2449 0.57 -0.7 149,750 + GFF2449 0.60 +1.0 149,891 + -0.9 149,909 - -0.4 149,909 - -0.9 149,909 - -1.0 149,933 + -0.0 149,933 + -0.7 149,934 - +0.1 149,934 - -1.0 149,972 + -0.7 149,978 - -1.0 150,003 + -0.2 150,003 + -1.9 150,003 + -1.8 150,003 + -0.0 150,003 + -0.6 150,003 + -1.3 150,003 + +1.7 150,004 - -0.3 150,004 - +0.4 150,004 - -0.6 150,005 + -1.0 150,005 + -1.0 150,005 + -0.2 150,005 + +0.3 150,005 + -0.6 150,005 + -0.6 150,005 + -0.1 150,005 + -0.8 150,005 + +0.7 150,005 + -1.3 150,005 + -0.0 150,005 + +0.4 150,005 + +0.6 150,006 - -0.3 150,006 - -0.0 150,006 - -1.1 150,006 - -1.3 150,006 - -1.0 150,006 - +0.3 150,009 + -1.3 150,009 + -0.8 150,009 + +0.7 150,009 + +0.7 150,009 + -0.3 150,009 + +0.1 150,009 + -0.3 150,009 + +0.8 150,009 + -0.0 150,009 + -1.3 150,009 + -0.3 150,009 + -1.9 150,009 + -0.4 150,009 - -1.0 150,010 - -1.3 150,010 - -0.2 150,010 - -2.2 150,010 - -1.3 150,010 - -2.0 150,010 - +0.3 150,022 + -0.6 150,106 + GFF2450 0.14 +0.3 150,106 + GFF2450 0.14 -1.3 150,106 + GFF2450 0.14 -1.0 150,107 - GFF2450 0.14 -0.0 150,120 + GFF2450 0.16 -0.4 150,156 + GFF2450 0.20 -0.4 150,157 - GFF2450 0.20 -0.6 150,279 + GFF2450 0.34 -1.0 150,279 + GFF2450 0.34 -0.3 150,380 + GFF2450 0.46 -1.1 150,380 + GFF2450 0.46 -0.6 150,429 + GFF2450 0.52 -0.2 150,485 - GFF2450 0.58 -1.1 150,576 + GFF2450 0.69 -0.7 150,576 + GFF2450 0.69 -0.7 150,576 + GFF2450 0.69 -0.4 150,576 + GFF2450 0.69 -0.6 150,576 + GFF2450 0.69 -0.1 150,576 + GFF2450 0.69 +0.3 150,576 + GFF2450 0.69 -0.0 150,577 - GFF2450 0.69 -1.1 150,577 - GFF2450 0.69 -0.2 150,577 - GFF2450 0.69 -1.3 150,657 + GFF2450 0.78 -0.5 150,657 + GFF2450 0.78 -1.0 150,658 - GFF2450 0.79 -0.6 150,658 - GFF2450 0.79 -0.2 150,658 - GFF2450 0.79 -1.3 150,658 - GFF2450 0.79 +0.4 150,658 - GFF2450 0.79 -1.3 150,705 + GFF2450 0.84 -0.1 150,705 + GFF2450 0.84 -0.1 150,726 + GFF2450 0.86 +0.5 150,797 + -0.5 150,797 + -1.4 150,797 + -1.8 150,798 - -2.2 150,830 - -0.6 150,839 + -0.2 150,839 + -0.2
Or see this region's nucleotide sequence