Strain Fitness in Methylophilus sp. DMC18 around GFF2434

Experiment: Methanol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF2432 and GFF2433 are separated by 6 nucleotidesGFF2433 and GFF2434 are separated by 62 nucleotidesGFF2434 and GFF2435 overlap by 4 nucleotidesGFF2435 and GFF2436 overlap by 1 nucleotides GFF2432 - Adaptive-response sensory-kinase SasA, at 132,430 to 133,911 GFF2432 GFF2433 - hypothetical protein, at 133,918 to 134,727 GFF2433 GFF2434 - Molybdopterin molybdenumtransferase, at 134,790 to 136,058 GFF2434 GFF2435 - Molybdenum cofactor guanylyltransferase, at 136,055 to 136,633 GFF2435 GFF2436 - GTP 3',8-cyclase, at 136,633 to 137,643 GFF2436 Position (kb) 134 135 136 137Strain fitness (log2 ratio) -2 -1 0 1at 133.818 kb on + strandat 133.819 kb on - strandat 133.823 kb on + strandat 133.823 kb on + strandat 133.824 kb on - strandat 133.824 kb on - strandat 133.843 kb on + strandat 133.844 kb on - strandat 133.844 kb on - strandat 133.847 kb on - strandat 133.919 kb on + strandat 133.919 kb on + strandat 133.920 kb on - strandat 134.743 kb on + strandat 134.743 kb on + strandat 134.743 kb on + strandat 134.744 kb on - strandat 134.744 kb on - strandat 134.744 kb on - strandat 134.744 kb on - strandat 134.744 kb on - strandat 134.744 kb on - strandat 134.868 kb on - strandat 134.891 kb on + strandat 134.891 kb on + strandat 134.891 kb on + strandat 134.892 kb on - strandat 134.892 kb on - strandat 134.952 kb on - strand, within GFF2434at 134.952 kb on - strand, within GFF2434at 135.092 kb on + strand, within GFF2434at 135.092 kb on + strand, within GFF2434at 135.092 kb on + strand, within GFF2434at 135.093 kb on - strand, within GFF2434at 135.301 kb on - strand, within GFF2434at 135.301 kb on - strand, within GFF2434at 135.389 kb on + strand, within GFF2434at 135.389 kb on + strand, within GFF2434at 135.389 kb on + strand, within GFF2434at 135.389 kb on + strand, within GFF2434at 135.390 kb on - strand, within GFF2434at 135.390 kb on - strand, within GFF2434at 135.390 kb on - strand, within GFF2434at 135.392 kb on - strand, within GFF2434at 135.392 kb on - strand, within GFF2434at 135.477 kb on - strand, within GFF2434at 135.477 kb on - strand, within GFF2434at 135.477 kb on - strand, within GFF2434at 135.558 kb on - strand, within GFF2434at 135.558 kb on - strand, within GFF2434at 135.598 kb on - strand, within GFF2434at 135.606 kb on - strand, within GFF2434at 135.785 kb on + strand, within GFF2434at 135.866 kb on + strand, within GFF2434at 135.875 kb on + strand, within GFF2434at 135.959 kb on - strandat 135.959 kb on - strandat 135.997 kb on + strandat 135.997 kb on + strandat 135.998 kb on - strandat 135.998 kb on - strandat 135.998 kb on - strandat 135.998 kb on - strandat 136.036 kb on - strandat 136.038 kb on + strandat 136.038 kb on + strandat 136.038 kb on + strandat 136.039 kb on - strandat 136.121 kb on + strand, within GFF2435at 136.121 kb on + strand, within GFF2435at 136.121 kb on + strand, within GFF2435at 136.122 kb on - strand, within GFF2435at 136.464 kb on + strand, within GFF2435at 136.465 kb on - strand, within GFF2435at 136.625 kb on - strandat 136.625 kb on - strandat 136.654 kb on - strandat 136.738 kb on + strand, within GFF2436at 136.739 kb on - strand, within GFF2436at 136.739 kb on - strand, within GFF2436at 136.739 kb on - strand, within GFF2436at 136.813 kb on + strand, within GFF2436at 136.814 kb on - strand, within GFF2436at 136.814 kb on - strand, within GFF2436at 136.819 kb on + strand, within GFF2436at 136.819 kb on + strand, within GFF2436at 136.836 kb on + strand, within GFF2436at 136.876 kb on - strand, within GFF2436at 136.887 kb on + strand, within GFF2436at 136.887 kb on + strand, within GFF2436at 136.887 kb on + strand, within GFF2436at 136.888 kb on - strand, within GFF2436at 136.888 kb on - strand, within GFF2436at 136.888 kb on - strand, within GFF2436at 136.925 kb on + strand, within GFF2436at 136.953 kb on + strand, within GFF2436at 136.954 kb on - strand, within GFF2436at 136.954 kb on - strand, within GFF2436at 136.954 kb on - strand, within GFF2436at 136.975 kb on - strand, within GFF2436at 136.981 kb on - strand, within GFF2436at 136.981 kb on - strand, within GFF2436at 136.981 kb on - strand, within GFF2436

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
remove
133,818 + -1.3
133,819 - +0.6
133,823 + -0.6
133,823 + -0.5
133,824 - -0.6
133,824 - -1.6
133,843 + -1.0
133,844 - -2.5
133,844 - -0.1
133,847 - +1.6
133,919 + +0.8
133,919 + -1.7
133,920 - -0.9
134,743 + -0.0
134,743 + -0.4
134,743 + -1.0
134,744 - +1.0
134,744 - -1.3
134,744 - -0.7
134,744 - -0.6
134,744 - +0.3
134,744 - -1.0
134,868 - -0.3
134,891 + +0.3
134,891 + -0.0
134,891 + +0.6
134,892 - -0.2
134,892 - -0.0
134,952 - GFF2434 0.13 -0.0
134,952 - GFF2434 0.13 -1.3
135,092 + GFF2434 0.24 -1.0
135,092 + GFF2434 0.24 -0.3
135,092 + GFF2434 0.24 +1.0
135,093 - GFF2434 0.24 -0.1
135,301 - GFF2434 0.40 -0.9
135,301 - GFF2434 0.40 -1.3
135,389 + GFF2434 0.47 -1.8
135,389 + GFF2434 0.47 -1.1
135,389 + GFF2434 0.47 +1.3
135,389 + GFF2434 0.47 -0.3
135,390 - GFF2434 0.47 -1.7
135,390 - GFF2434 0.47 -0.8
135,390 - GFF2434 0.47 -1.5
135,392 - GFF2434 0.47 -1.5
135,392 - GFF2434 0.47 +0.3
135,477 - GFF2434 0.54 -0.0
135,477 - GFF2434 0.54 -1.0
135,477 - GFF2434 0.54 -1.6
135,558 - GFF2434 0.61 -1.0
135,558 - GFF2434 0.61 -1.0
135,598 - GFF2434 0.64 -1.0
135,606 - GFF2434 0.64 -2.2
135,785 + GFF2434 0.78 -1.6
135,866 + GFF2434 0.85 +0.4
135,875 + GFF2434 0.86 -0.0
135,959 - -1.3
135,959 - -1.2
135,997 + -1.0
135,997 + -0.0
135,998 - -2.0
135,998 - -0.6
135,998 - -1.8
135,998 - -0.7
136,036 - -1.0
136,038 + -1.4
136,038 + -1.7
136,038 + -0.3
136,039 - -0.9
136,121 + GFF2435 0.11 -0.6
136,121 + GFF2435 0.11 -2.0
136,121 + GFF2435 0.11 -0.6
136,122 - GFF2435 0.12 -0.2
136,464 + GFF2435 0.71 -0.7
136,465 - GFF2435 0.71 -0.9
136,625 - +1.0
136,625 - -1.0
136,654 - -0.9
136,738 + GFF2436 0.10 -0.0
136,739 - GFF2436 0.10 -1.3
136,739 - GFF2436 0.10 -1.2
136,739 - GFF2436 0.10 -1.3
136,813 + GFF2436 0.18 -1.5
136,814 - GFF2436 0.18 +0.4
136,814 - GFF2436 0.18 -2.2
136,819 + GFF2436 0.18 -1.8
136,819 + GFF2436 0.18 -1.8
136,836 + GFF2436 0.20 -0.8
136,876 - GFF2436 0.24 -1.3
136,887 + GFF2436 0.25 -0.8
136,887 + GFF2436 0.25 -0.3
136,887 + GFF2436 0.25 -0.3
136,888 - GFF2436 0.25 -1.6
136,888 - GFF2436 0.25 +0.7
136,888 - GFF2436 0.25 +0.3
136,925 + GFF2436 0.29 +0.7
136,953 + GFF2436 0.32 +0.3
136,954 - GFF2436 0.32 -1.2
136,954 - GFF2436 0.32 -2.0
136,954 - GFF2436 0.32 -1.0
136,975 - GFF2436 0.34 -1.1
136,981 - GFF2436 0.34 -0.5
136,981 - GFF2436 0.34 +0.4
136,981 - GFF2436 0.34 -1.5

Or see this region's nucleotide sequence