Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF238 and GFF239 are separated by 47 nucleotides GFF239 and GFF240 overlap by 15 nucleotides GFF240 and GFF241 are separated by 98 nucleotides GFF241 and GFF242 are separated by 1 nucleotides GFF242 and GFF243 are separated by 256 nucleotides
GFF238 - hypothetical protein, at 252,154 to 252,273
GFF238
GFF239 - hypothetical protein, at 252,321 to 252,608
GFF239
GFF240 - hypothetical protein, at 252,594 to 252,707
GFF240
GFF241 - hypothetical protein, at 252,806 to 253,048
GFF241
GFF242 - hypothetical protein, at 253,050 to 253,436
GFF242
GFF243 - hypothetical protein, at 253,693 to 255,597
GFF243
Position (kb) 253
254 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 252.067 kb on - strand at 252.070 kb on + strand at 252.070 kb on + strand at 252.070 kb on + strand at 252.070 kb on + strand at 252.070 kb on + strand at 252.071 kb on - strand at 252.071 kb on - strand at 252.076 kb on + strand at 252.076 kb on + strand at 252.076 kb on + strand at 252.076 kb on + strand at 252.077 kb on - strand at 252.077 kb on - strand at 252.077 kb on - strand at 252.077 kb on - strand at 252.077 kb on - strand at 252.077 kb on - strand at 252.079 kb on - strand at 252.079 kb on - strand at 252.079 kb on - strand at 252.079 kb on - strand at 252.080 kb on + strand at 252.081 kb on - strand at 252.081 kb on - strand at 252.134 kb on - strand at 252.140 kb on + strand at 252.147 kb on - strand at 252.148 kb on + strand at 252.148 kb on + strand at 252.149 kb on - strand at 252.149 kb on - strand at 252.149 kb on - strand at 252.163 kb on - strand at 252.184 kb on - strand, within GFF238 at 252.190 kb on + strand, within GFF238 at 252.190 kb on + strand, within GFF238 at 252.190 kb on + strand, within GFF238 at 252.203 kb on + strand, within GFF238 at 252.203 kb on + strand, within GFF238 at 252.207 kb on + strand, within GFF238 at 252.207 kb on + strand, within GFF238 at 252.207 kb on + strand, within GFF238 at 252.207 kb on + strand, within GFF238 at 252.207 kb on + strand, within GFF238 at 252.208 kb on - strand, within GFF238 at 252.255 kb on - strand, within GFF238 at 252.303 kb on + strand at 252.326 kb on + strand at 252.326 kb on + strand at 252.326 kb on + strand at 252.387 kb on - strand, within GFF239 at 252.418 kb on + strand, within GFF239 at 252.418 kb on + strand, within GFF239 at 252.418 kb on + strand, within GFF239 at 252.418 kb on + strand, within GFF239 at 252.418 kb on + strand, within GFF239 at 252.419 kb on - strand, within GFF239 at 252.419 kb on - strand, within GFF239 at 252.419 kb on - strand, within GFF239 at 252.534 kb on - strand, within GFF239 at 252.595 kb on + strand at 252.621 kb on + strand, within GFF240 at 252.621 kb on + strand, within GFF240 at 252.622 kb on - strand, within GFF240 at 252.622 kb on - strand, within GFF240 at 252.622 kb on - strand, within GFF240 at 252.649 kb on + strand, within GFF240 at 252.666 kb on + strand, within GFF240 at 252.666 kb on + strand, within GFF240 at 252.667 kb on - strand, within GFF240 at 252.678 kb on + strand, within GFF240 at 252.678 kb on + strand, within GFF240 at 252.678 kb on + strand, within GFF240 at 252.679 kb on - strand, within GFF240 at 252.679 kb on - strand, within GFF240 at 252.679 kb on - strand, within GFF240 at 252.679 kb on - strand, within GFF240 at 252.679 kb on - strand, within GFF240 at 252.679 kb on - strand, within GFF240 at 252.679 kb on - strand, within GFF240 at 252.683 kb on + strand, within GFF240 at 252.683 kb on + strand, within GFF240 at 252.683 kb on + strand, within GFF240 at 252.684 kb on - strand, within GFF240 at 252.684 kb on - strand, within GFF240 at 252.684 kb on - strand, within GFF240 at 252.684 kb on - strand, within GFF240 at 252.684 kb on - strand, within GFF240 at 252.684 kb on - strand, within GFF240 at 252.708 kb on - strand at 252.747 kb on + strand at 252.747 kb on + strand at 252.774 kb on - strand at 252.782 kb on + strand at 252.814 kb on + strand at 252.913 kb on - strand, within GFF241 at 252.958 kb on + strand, within GFF241 at 252.958 kb on + strand, within GFF241 at 252.967 kb on + strand, within GFF241 at 252.967 kb on + strand, within GFF241 at 252.967 kb on + strand, within GFF241 at 252.967 kb on + strand, within GFF241 at 253.046 kb on + strand at 253.047 kb on - strand at 253.073 kb on + strand at 253.073 kb on + strand at 253.073 kb on + strand at 253.073 kb on + strand at 253.073 kb on + strand at 253.139 kb on + strand, within GFF242 at 253.140 kb on - strand, within GFF242 at 253.155 kb on + strand, within GFF242 at 253.156 kb on - strand, within GFF242 at 253.217 kb on + strand, within GFF242 at 253.218 kb on - strand, within GFF242 at 253.234 kb on + strand, within GFF242 at 253.283 kb on + strand, within GFF242 at 253.283 kb on + strand, within GFF242 at 253.284 kb on - strand, within GFF242 at 253.325 kb on + strand, within GFF242 at 253.434 kb on + strand at 253.435 kb on - strand at 253.442 kb on + strand at 253.443 kb on - strand at 253.448 kb on + strand at 253.448 kb on + strand at 253.602 kb on + strand at 253.602 kb on + strand at 253.602 kb on + strand at 253.613 kb on + strand at 253.614 kb on - strand at 253.675 kb on + strand at 253.676 kb on - strand at 253.683 kb on + strand at 253.683 kb on + strand at 253.688 kb on - strand at 253.753 kb on + strand at 253.753 kb on + strand at 253.753 kb on + strand at 253.753 kb on + strand at 253.754 kb on - strand at 253.754 kb on - strand at 253.758 kb on + strand at 253.758 kb on + strand at 253.759 kb on - strand at 253.762 kb on + strand at 253.762 kb on + strand at 253.763 kb on - strand at 253.763 kb on - strand at 253.848 kb on - strand at 253.908 kb on + strand, within GFF243 at 253.908 kb on + strand, within GFF243 at 253.908 kb on + strand, within GFF243 at 253.908 kb on + strand, within GFF243 at 253.909 kb on - strand, within GFF243 at 253.909 kb on - strand, within GFF243 at 253.959 kb on + strand, within GFF243 at 253.960 kb on - strand, within GFF243 at 253.960 kb on - strand, within GFF243 at 253.995 kb on + strand, within GFF243 at 253.996 kb on - strand, within GFF243 at 254.096 kb on + strand, within GFF243 at 254.096 kb on + strand, within GFF243 at 254.096 kb on + strand, within GFF243 at 254.097 kb on - strand, within GFF243 at 254.097 kb on - strand, within GFF243 at 254.097 kb on - strand, within GFF243 at 254.097 kb on - strand, within GFF243 at 254.097 kb on - strand, within GFF243 at 254.097 kb on - strand, within GFF243 at 254.097 kb on - strand, within GFF243 at 254.171 kb on - strand, within GFF243 at 254.171 kb on - strand, within GFF243 at 254.265 kb on + strand, within GFF243 at 254.356 kb on + strand, within GFF243 at 254.356 kb on + strand, within GFF243 at 254.357 kb on - strand, within GFF243 at 254.357 kb on - strand, within GFF243 at 254.360 kb on + strand, within GFF243 at 254.361 kb on - strand, within GFF243 at 254.389 kb on + strand, within GFF243 at 254.390 kb on - strand, within GFF243 at 254.401 kb on + strand, within GFF243 at 254.401 kb on + strand, within GFF243 at 254.402 kb on - strand, within GFF243 at 254.411 kb on + strand, within GFF243 at 254.412 kb on - strand, within GFF243
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 252,067 - -1.3 252,070 + -1.3 252,070 + -0.2 252,070 + +0.2 252,070 + -0.7 252,070 + +0.6 252,071 - -0.3 252,071 - +0.0 252,076 + +0.5 252,076 + -0.3 252,076 + -0.6 252,076 + +0.6 252,077 - -2.2 252,077 - -1.0 252,077 - -1.3 252,077 - -0.3 252,077 - -0.7 252,077 - +0.0 252,079 - -0.3 252,079 - -2.0 252,079 - +0.7 252,079 - -0.7 252,080 + -0.5 252,081 - -0.3 252,081 - -0.1 252,134 - +0.4 252,140 + +1.0 252,147 - -0.7 252,148 + -1.0 252,148 + -0.1 252,149 - +0.2 252,149 - +1.2 252,149 - -0.1 252,163 - +0.0 252,184 - GFF238 0.25 +0.0 252,190 + GFF238 0.30 +0.6 252,190 + GFF238 0.30 -0.8 252,190 + GFF238 0.30 -0.6 252,203 + GFF238 0.41 -0.6 252,203 + GFF238 0.41 +0.6 252,207 + GFF238 0.44 -0.9 252,207 + GFF238 0.44 -0.5 252,207 + GFF238 0.44 +1.4 252,207 + GFF238 0.44 -0.5 252,207 + GFF238 0.44 +0.0 252,208 - GFF238 0.45 +0.3 252,255 - GFF238 0.84 +0.4 252,303 + +0.0 252,326 + +0.0 252,326 + -0.5 252,326 + +0.0 252,387 - GFF239 0.23 -0.1 252,418 + GFF239 0.34 -1.2 252,418 + GFF239 0.34 +0.0 252,418 + GFF239 0.34 -1.0 252,418 + GFF239 0.34 -1.0 252,418 + GFF239 0.34 +0.7 252,419 - GFF239 0.34 -1.9 252,419 - GFF239 0.34 +1.5 252,419 - GFF239 0.34 -0.6 252,534 - GFF239 0.74 -0.8 252,595 + -0.0 252,621 + GFF240 0.24 +0.0 252,621 + GFF240 0.24 -0.5 252,622 - GFF240 0.25 +0.3 252,622 - GFF240 0.25 -1.0 252,622 - GFF240 0.25 -0.4 252,649 + GFF240 0.48 +0.0 252,666 + GFF240 0.63 +0.0 252,666 + GFF240 0.63 -0.6 252,667 - GFF240 0.64 +0.1 252,678 + GFF240 0.74 +0.7 252,678 + GFF240 0.74 +0.5 252,678 + GFF240 0.74 +0.0 252,679 - GFF240 0.75 -0.3 252,679 - GFF240 0.75 +0.0 252,679 - GFF240 0.75 -0.8 252,679 - GFF240 0.75 -1.8 252,679 - GFF240 0.75 -0.1 252,679 - GFF240 0.75 -0.8 252,679 - GFF240 0.75 +0.0 252,683 + GFF240 0.78 -1.0 252,683 + GFF240 0.78 -0.9 252,683 + GFF240 0.78 +0.6 252,684 - GFF240 0.79 -0.6 252,684 - GFF240 0.79 -1.5 252,684 - GFF240 0.79 +0.2 252,684 - GFF240 0.79 -1.3 252,684 - GFF240 0.79 +0.1 252,684 - GFF240 0.79 -0.8 252,708 - -2.6 252,747 + +0.0 252,747 + -0.3 252,774 - +0.7 252,782 + +0.3 252,814 + -0.3 252,913 - GFF241 0.44 -1.5 252,958 + GFF241 0.63 +0.7 252,958 + GFF241 0.63 -1.0 252,967 + GFF241 0.66 -0.4 252,967 + GFF241 0.66 -3.0 252,967 + GFF241 0.66 +0.3 252,967 + GFF241 0.66 +0.7 253,046 + +0.5 253,047 - +0.4 253,073 + -0.1 253,073 + -0.9 253,073 + -0.5 253,073 + +0.5 253,073 + -1.0 253,139 + GFF242 0.23 -1.0 253,140 - GFF242 0.23 +0.2 253,155 + GFF242 0.27 -0.4 253,156 - GFF242 0.27 -1.2 253,217 + GFF242 0.43 -0.5 253,218 - GFF242 0.43 -0.8 253,234 + GFF242 0.48 +0.0 253,283 + GFF242 0.60 -2.2 253,283 + GFF242 0.60 -2.9 253,284 - GFF242 0.60 -1.6 253,325 + GFF242 0.71 -0.6 253,434 + -1.0 253,435 - -0.8 253,442 + -0.6 253,443 - +0.3 253,448 + -1.3 253,448 + +0.4 253,602 + -0.1 253,602 + +0.3 253,602 + -0.6 253,613 + +0.0 253,614 - +1.3 253,675 + -1.1 253,676 - -0.4 253,683 + +0.0 253,683 + +1.3 253,688 - -1.1 253,753 + -2.3 253,753 + -0.5 253,753 + -0.7 253,753 + -0.3 253,754 - +0.0 253,754 - +0.3 253,758 + -0.4 253,758 + +1.3 253,759 - +0.3 253,762 + -0.3 253,762 + +0.2 253,763 - -0.5 253,763 - +0.4 253,848 - -0.3 253,908 + GFF243 0.11 -0.4 253,908 + GFF243 0.11 +0.0 253,908 + GFF243 0.11 +0.0 253,908 + GFF243 0.11 +0.4 253,909 - GFF243 0.11 +0.0 253,909 - GFF243 0.11 -0.3 253,959 + GFF243 0.14 -0.2 253,960 - GFF243 0.14 -1.0 253,960 - GFF243 0.14 -0.6 253,995 + GFF243 0.16 -1.0 253,996 - GFF243 0.16 -0.8 254,096 + GFF243 0.21 +0.3 254,096 + GFF243 0.21 -1.3 254,096 + GFF243 0.21 +0.6 254,097 - GFF243 0.21 -0.7 254,097 - GFF243 0.21 +0.3 254,097 - GFF243 0.21 -1.4 254,097 - GFF243 0.21 -1.6 254,097 - GFF243 0.21 +0.0 254,097 - GFF243 0.21 -1.0 254,097 - GFF243 0.21 -1.4 254,171 - GFF243 0.25 -0.2 254,171 - GFF243 0.25 -0.7 254,265 + GFF243 0.30 -1.6 254,356 + GFF243 0.35 -0.3 254,356 + GFF243 0.35 +0.5 254,357 - GFF243 0.35 +0.2 254,357 - GFF243 0.35 -0.6 254,360 + GFF243 0.35 -0.7 254,361 - GFF243 0.35 -2.0 254,389 + GFF243 0.37 -0.7 254,390 - GFF243 0.37 +0.4 254,401 + GFF243 0.37 -0.6 254,401 + GFF243 0.37 -0.8 254,402 - GFF243 0.37 -1.6 254,411 + GFF243 0.38 -1.7 254,412 - GFF243 0.38 -1.8
Or see this region's nucleotide sequence