Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2340 and GFF2341 are separated by 104 nucleotides GFF2341 and GFF2342 are separated by 6 nucleotides GFF2342 and GFF2343 are separated by 793 nucleotides
GFF2340 - 50S ribosomal protein L19, at 51,665 to 52,054
GFF2340
GFF2341 - Bifunctional transcriptional activator/DNA repair enzyme Ada, at 52,159 to 52,635
GFF2341
GFF2342 - Tyrosine recombinase XerD, at 52,642 to 53,559
GFF2342
GFF2343 - Dihydroneopterin aldolase, at 54,353 to 54,703
GFF2343
Position (kb) 52
53
54 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 52.003 kb on + strand, within GFF2340 at 52.052 kb on + strand at 52.052 kb on + strand at 52.098 kb on + strand at 52.106 kb on + strand at 52.106 kb on + strand at 52.106 kb on + strand at 52.107 kb on - strand at 52.111 kb on + strand at 52.112 kb on - strand at 52.142 kb on + strand at 52.142 kb on + strand at 52.143 kb on - strand at 52.148 kb on + strand at 52.148 kb on + strand at 52.148 kb on + strand at 52.149 kb on - strand at 52.149 kb on - strand at 52.149 kb on - strand at 52.149 kb on - strand at 52.224 kb on + strand, within GFF2341 at 52.259 kb on + strand, within GFF2341 at 52.259 kb on + strand, within GFF2341 at 52.260 kb on - strand, within GFF2341 at 52.260 kb on - strand, within GFF2341 at 52.260 kb on - strand, within GFF2341 at 52.327 kb on + strand, within GFF2341 at 52.327 kb on + strand, within GFF2341 at 52.327 kb on + strand, within GFF2341 at 52.327 kb on + strand, within GFF2341 at 52.327 kb on + strand, within GFF2341 at 52.328 kb on - strand, within GFF2341 at 52.328 kb on - strand, within GFF2341 at 52.345 kb on - strand, within GFF2341 at 52.359 kb on + strand, within GFF2341 at 52.359 kb on + strand, within GFF2341 at 52.359 kb on + strand, within GFF2341 at 52.360 kb on - strand, within GFF2341 at 52.360 kb on - strand, within GFF2341 at 52.360 kb on - strand, within GFF2341 at 52.360 kb on - strand, within GFF2341 at 52.360 kb on - strand, within GFF2341 at 52.368 kb on + strand, within GFF2341 at 52.369 kb on - strand, within GFF2341 at 52.441 kb on + strand, within GFF2341 at 52.442 kb on - strand, within GFF2341 at 52.442 kb on - strand, within GFF2341 at 52.488 kb on + strand, within GFF2341 at 52.566 kb on + strand, within GFF2341 at 52.566 kb on + strand, within GFF2341 at 52.567 kb on - strand, within GFF2341 at 52.567 kb on - strand, within GFF2341 at 52.577 kb on + strand, within GFF2341 at 52.578 kb on - strand, within GFF2341 at 52.633 kb on + strand at 52.633 kb on + strand at 52.740 kb on + strand, within GFF2342 at 52.740 kb on + strand, within GFF2342 at 52.803 kb on + strand, within GFF2342 at 52.803 kb on + strand, within GFF2342 at 52.804 kb on - strand, within GFF2342 at 52.840 kb on + strand, within GFF2342 at 52.840 kb on + strand, within GFF2342 at 52.840 kb on + strand, within GFF2342 at 52.841 kb on - strand, within GFF2342 at 52.841 kb on - strand, within GFF2342 at 52.878 kb on + strand, within GFF2342 at 52.878 kb on + strand, within GFF2342 at 52.879 kb on - strand, within GFF2342 at 52.882 kb on - strand, within GFF2342 at 52.953 kb on + strand, within GFF2342 at 52.954 kb on - strand, within GFF2342 at 52.954 kb on - strand, within GFF2342 at 53.062 kb on - strand, within GFF2342 at 53.092 kb on + strand, within GFF2342 at 53.092 kb on + strand, within GFF2342 at 53.291 kb on + strand, within GFF2342 at 53.292 kb on - strand, within GFF2342 at 53.353 kb on + strand, within GFF2342 at 53.353 kb on + strand, within GFF2342 at 53.445 kb on - strand, within GFF2342 at 53.478 kb on + strand at 53.498 kb on - strand at 53.499 kb on + strand at 53.499 kb on + strand at 53.499 kb on + strand at 53.500 kb on - strand at 53.500 kb on - strand at 53.500 kb on - strand at 53.535 kb on + strand at 53.575 kb on + strand at 53.575 kb on + strand at 53.576 kb on - strand at 53.607 kb on + strand at 53.607 kb on + strand at 53.607 kb on + strand at 53.607 kb on + strand at 53.607 kb on + strand at 53.607 kb on + strand at 53.608 kb on - strand at 53.608 kb on - strand at 53.608 kb on - strand at 53.608 kb on - strand at 53.608 kb on - strand at 53.616 kb on + strand at 53.620 kb on + strand at 53.620 kb on + strand at 53.620 kb on + strand at 53.620 kb on + strand at 53.621 kb on - strand at 53.621 kb on - strand at 53.621 kb on - strand at 53.700 kb on + strand at 53.703 kb on + strand at 53.703 kb on + strand at 53.704 kb on - strand at 53.704 kb on - strand at 53.729 kb on + strand at 53.747 kb on + strand at 53.748 kb on - strand at 53.754 kb on - strand at 53.754 kb on - strand at 53.754 kb on - strand at 53.757 kb on + strand at 53.757 kb on + strand at 53.757 kb on + strand at 53.758 kb on - strand at 53.802 kb on - strand at 53.874 kb on + strand at 53.921 kb on + strand at 53.921 kb on + strand at 53.921 kb on + strand at 53.921 kb on + strand at 53.921 kb on + strand at 53.922 kb on - strand at 53.922 kb on - strand at 53.922 kb on - strand at 53.922 kb on - strand at 53.922 kb on - strand at 53.922 kb on - strand at 53.922 kb on - strand at 54.035 kb on - strand at 54.042 kb on + strand at 54.042 kb on + strand at 54.042 kb on + strand at 54.043 kb on - strand at 54.050 kb on + strand at 54.050 kb on + strand at 54.051 kb on - strand at 54.051 kb on - strand at 54.101 kb on + strand at 54.102 kb on - strand at 54.283 kb on - strand at 54.310 kb on + strand at 54.310 kb on + strand at 54.310 kb on + strand at 54.337 kb on - strand at 54.355 kb on - strand at 54.355 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 52,003 + GFF2340 0.87 -1.3 52,052 + -0.5 52,052 + +0.3 52,098 + -0.6 52,106 + -0.6 52,106 + -0.0 52,106 + +1.0 52,107 - -0.0 52,111 + -1.0 52,112 - +1.4 52,142 + -0.5 52,142 + -0.6 52,143 - +1.0 52,148 + -0.8 52,148 + -1.2 52,148 + -1.2 52,149 - -1.0 52,149 - -1.2 52,149 - -0.8 52,149 - -1.0 52,224 + GFF2341 0.14 -1.3 52,259 + GFF2341 0.21 -1.6 52,259 + GFF2341 0.21 -1.0 52,260 - GFF2341 0.21 -0.6 52,260 - GFF2341 0.21 -0.7 52,260 - GFF2341 0.21 -1.6 52,327 + GFF2341 0.35 -0.7 52,327 + GFF2341 0.35 -0.6 52,327 + GFF2341 0.35 +0.4 52,327 + GFF2341 0.35 -1.0 52,327 + GFF2341 0.35 -0.2 52,328 - GFF2341 0.35 +0.2 52,328 - GFF2341 0.35 -0.5 52,345 - GFF2341 0.39 -1.5 52,359 + GFF2341 0.42 -0.9 52,359 + GFF2341 0.42 -1.8 52,359 + GFF2341 0.42 -1.0 52,360 - GFF2341 0.42 -0.0 52,360 - GFF2341 0.42 +1.0 52,360 - GFF2341 0.42 +0.3 52,360 - GFF2341 0.42 -0.2 52,360 - GFF2341 0.42 -1.1 52,368 + GFF2341 0.44 -0.8 52,369 - GFF2341 0.44 -0.7 52,441 + GFF2341 0.59 -0.6 52,442 - GFF2341 0.59 -0.0 52,442 - GFF2341 0.59 -1.0 52,488 + GFF2341 0.69 -0.2 52,566 + GFF2341 0.85 +0.3 52,566 + GFF2341 0.85 +0.3 52,567 - GFF2341 0.86 -1.3 52,567 - GFF2341 0.86 -0.5 52,577 + GFF2341 0.88 -0.3 52,578 - GFF2341 0.88 +1.0 52,633 + -1.8 52,633 + +0.3 52,740 + GFF2342 0.11 -1.8 52,740 + GFF2342 0.11 -0.6 52,803 + GFF2342 0.18 -0.0 52,803 + GFF2342 0.18 +0.7 52,804 - GFF2342 0.18 -2.2 52,840 + GFF2342 0.22 -0.3 52,840 + GFF2342 0.22 +0.7 52,840 + GFF2342 0.22 -2.0 52,841 - GFF2342 0.22 -1.8 52,841 - GFF2342 0.22 -1.1 52,878 + GFF2342 0.26 -0.3 52,878 + GFF2342 0.26 -1.3 52,879 - GFF2342 0.26 -0.3 52,882 - GFF2342 0.26 -0.6 52,953 + GFF2342 0.34 +0.7 52,954 - GFF2342 0.34 -1.3 52,954 - GFF2342 0.34 -1.0 53,062 - GFF2342 0.46 +0.4 53,092 + GFF2342 0.49 -1.7 53,092 + GFF2342 0.49 -0.2 53,291 + GFF2342 0.71 -1.0 53,292 - GFF2342 0.71 +0.3 53,353 + GFF2342 0.77 -1.8 53,353 + GFF2342 0.77 -1.3 53,445 - GFF2342 0.87 +1.3 53,478 + -0.3 53,498 - -3.3 53,499 + -0.8 53,499 + -0.7 53,499 + -1.7 53,500 - +0.6 53,500 - -2.2 53,500 - +0.6 53,535 + -1.6 53,575 + -0.0 53,575 + +0.6 53,576 - -0.3 53,607 + -1.6 53,607 + -0.6 53,607 + -1.1 53,607 + -1.0 53,607 + -1.0 53,607 + +1.3 53,608 - +0.4 53,608 - -0.0 53,608 - +1.3 53,608 - -0.1 53,608 - +0.2 53,616 + +0.2 53,620 + -0.3 53,620 + -0.0 53,620 + -1.0 53,620 + -0.6 53,621 - +1.3 53,621 - -0.1 53,621 - -1.3 53,700 + +0.3 53,703 + -1.4 53,703 + +0.3 53,704 - -0.3 53,704 - -1.4 53,729 + +0.6 53,747 + -0.5 53,748 - -1.8 53,754 - +0.6 53,754 - +0.4 53,754 - -0.9 53,757 + -0.2 53,757 + -0.7 53,757 + -1.0 53,758 - +0.3 53,802 - +0.5 53,874 + -0.1 53,921 + -0.6 53,921 + -1.5 53,921 + -0.3 53,921 + -0.3 53,921 + -0.1 53,922 - -0.9 53,922 - -1.1 53,922 - -1.8 53,922 - -0.4 53,922 - +0.6 53,922 - -0.3 53,922 - +0.8 54,035 - +0.7 54,042 + -1.3 54,042 + -2.3 54,042 + +0.4 54,043 - +0.6 54,050 + -0.7 54,050 + -0.0 54,051 - -0.9 54,051 - -0.6 54,101 + -0.1 54,102 - -0.0 54,283 - -0.7 54,310 + -1.2 54,310 + -0.5 54,310 + -0.4 54,337 - -0.6 54,355 - -0.4 54,355 - -0.3
Or see this region's nucleotide sequence