Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2337 and GFF2338 are separated by 22 nucleotides GFF2338 and GFF2339 are separated by 15 nucleotides GFF2339 and GFF2340 are separated by 33 nucleotides GFF2340 and GFF2341 are separated by 104 nucleotides
GFF2337 - hypothetical protein, at 49,867 to 50,289
GFF2337
GFF2338 - Ribosome maturation factor RimM, at 50,312 to 50,863
GFF2338
GFF2339 - tRNA (guanine-N(1)-)-methyltransferase, at 50,879 to 51,631
GFF2339
GFF2340 - 50S ribosomal protein L19, at 51,665 to 52,054
GFF2340
GFF2341 - Bifunctional transcriptional activator/DNA repair enzyme Ada, at 52,159 to 52,635
GFF2341
Position (kb) 50
51
52 Strain fitness (log2 ratio) -2
-1
0
1 at 50.103 kb on + strand, within GFF2337 at 50.130 kb on + strand, within GFF2337 at 50.861 kb on + strand at 50.947 kb on + strand at 50.972 kb on + strand, within GFF2339 at 51.004 kb on + strand, within GFF2339 at 51.004 kb on + strand, within GFF2339 at 51.114 kb on + strand, within GFF2339 at 51.114 kb on + strand, within GFF2339 at 51.459 kb on + strand, within GFF2339 at 52.003 kb on + strand, within GFF2340 at 52.052 kb on + strand at 52.052 kb on + strand at 52.098 kb on + strand at 52.106 kb on + strand at 52.106 kb on + strand at 52.106 kb on + strand at 52.107 kb on - strand at 52.111 kb on + strand at 52.112 kb on - strand at 52.142 kb on + strand at 52.142 kb on + strand at 52.143 kb on - strand at 52.148 kb on + strand at 52.148 kb on + strand at 52.148 kb on + strand at 52.149 kb on - strand at 52.149 kb on - strand at 52.149 kb on - strand at 52.149 kb on - strand at 52.224 kb on + strand, within GFF2341 at 52.259 kb on + strand, within GFF2341 at 52.259 kb on + strand, within GFF2341 at 52.260 kb on - strand, within GFF2341 at 52.260 kb on - strand, within GFF2341 at 52.260 kb on - strand, within GFF2341 at 52.327 kb on + strand, within GFF2341 at 52.327 kb on + strand, within GFF2341 at 52.327 kb on + strand, within GFF2341 at 52.327 kb on + strand, within GFF2341 at 52.327 kb on + strand, within GFF2341 at 52.328 kb on - strand, within GFF2341 at 52.328 kb on - strand, within GFF2341 at 52.345 kb on - strand, within GFF2341 at 52.359 kb on + strand, within GFF2341 at 52.359 kb on + strand, within GFF2341 at 52.359 kb on + strand, within GFF2341 at 52.360 kb on - strand, within GFF2341 at 52.360 kb on - strand, within GFF2341 at 52.360 kb on - strand, within GFF2341 at 52.360 kb on - strand, within GFF2341 at 52.360 kb on - strand, within GFF2341 at 52.368 kb on + strand, within GFF2341 at 52.369 kb on - strand, within GFF2341 at 52.441 kb on + strand, within GFF2341 at 52.442 kb on - strand, within GFF2341 at 52.442 kb on - strand, within GFF2341 at 52.488 kb on + strand, within GFF2341 at 52.566 kb on + strand, within GFF2341 at 52.566 kb on + strand, within GFF2341 at 52.567 kb on - strand, within GFF2341 at 52.567 kb on - strand, within GFF2341 at 52.577 kb on + strand, within GFF2341 at 52.578 kb on - strand, within GFF2341
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 50,103 + GFF2337 0.56 -0.8 50,130 + GFF2337 0.62 -0.2 50,861 + -0.1 50,947 + -1.0 50,972 + GFF2339 0.12 -0.0 51,004 + GFF2339 0.17 -0.9 51,004 + GFF2339 0.17 -0.0 51,114 + GFF2339 0.31 -0.6 51,114 + GFF2339 0.31 -0.2 51,459 + GFF2339 0.77 -1.8 52,003 + GFF2340 0.87 -1.3 52,052 + -0.5 52,052 + +0.3 52,098 + -0.6 52,106 + -0.6 52,106 + -0.0 52,106 + +1.0 52,107 - -0.0 52,111 + -1.0 52,112 - +1.4 52,142 + -0.5 52,142 + -0.6 52,143 - +1.0 52,148 + -0.8 52,148 + -1.2 52,148 + -1.2 52,149 - -1.0 52,149 - -1.2 52,149 - -0.8 52,149 - -1.0 52,224 + GFF2341 0.14 -1.3 52,259 + GFF2341 0.21 -1.6 52,259 + GFF2341 0.21 -1.0 52,260 - GFF2341 0.21 -0.6 52,260 - GFF2341 0.21 -0.7 52,260 - GFF2341 0.21 -1.6 52,327 + GFF2341 0.35 -0.7 52,327 + GFF2341 0.35 -0.6 52,327 + GFF2341 0.35 +0.4 52,327 + GFF2341 0.35 -1.0 52,327 + GFF2341 0.35 -0.2 52,328 - GFF2341 0.35 +0.2 52,328 - GFF2341 0.35 -0.5 52,345 - GFF2341 0.39 -1.5 52,359 + GFF2341 0.42 -0.9 52,359 + GFF2341 0.42 -1.8 52,359 + GFF2341 0.42 -1.0 52,360 - GFF2341 0.42 -0.0 52,360 - GFF2341 0.42 +1.0 52,360 - GFF2341 0.42 +0.3 52,360 - GFF2341 0.42 -0.2 52,360 - GFF2341 0.42 -1.1 52,368 + GFF2341 0.44 -0.8 52,369 - GFF2341 0.44 -0.7 52,441 + GFF2341 0.59 -0.6 52,442 - GFF2341 0.59 -0.0 52,442 - GFF2341 0.59 -1.0 52,488 + GFF2341 0.69 -0.2 52,566 + GFF2341 0.85 +0.3 52,566 + GFF2341 0.85 +0.3 52,567 - GFF2341 0.86 -1.3 52,567 - GFF2341 0.86 -0.5 52,577 + GFF2341 0.88 -0.3 52,578 - GFF2341 0.88 +1.0
Or see this region's nucleotide sequence