Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2325 and GFF2326 overlap by 4 nucleotides GFF2326 and GFF2327 are separated by 129 nucleotides GFF2327 and GFF2328 are separated by 1 nucleotides GFF2328 and GFF2329 overlap by 4 nucleotides
GFF2325 - Crossover junction endodeoxyribonuclease RuvC, at 40,859 to 41,419
GFF2325
GFF2326 - Holliday junction ATP-dependent DNA helicase RuvA, at 41,416 to 41,991
GFF2326
GFF2327 - Holliday junction ATP-dependent DNA helicase RuvB, at 42,121 to 43,167
GFF2327
GFF2328 - Acyl-CoA thioesterase YbgC, at 43,169 to 43,564
GFF2328
GFF2329 - Tol-Pal system protein TolQ, at 43,561 to 44,235
GFF2329
Position (kb) 42
43
44 Strain fitness (log2 ratio) -2
-1
0
1 at 41.202 kb on - strand, within GFF2325 at 41.287 kb on + strand, within GFF2325 at 41.287 kb on + strand, within GFF2325 at 41.367 kb on + strand at 41.367 kb on + strand at 41.398 kb on + strand at 41.398 kb on + strand at 41.398 kb on + strand at 41.399 kb on - strand at 41.415 kb on + strand at 41.415 kb on + strand at 41.416 kb on - strand at 41.492 kb on - strand, within GFF2326 at 41.492 kb on - strand, within GFF2326 at 41.498 kb on + strand, within GFF2326 at 41.565 kb on + strand, within GFF2326 at 41.565 kb on + strand, within GFF2326 at 41.566 kb on - strand, within GFF2326 at 41.566 kb on - strand, within GFF2326 at 41.596 kb on + strand, within GFF2326 at 41.596 kb on + strand, within GFF2326 at 41.596 kb on + strand, within GFF2326 at 41.752 kb on - strand, within GFF2326 at 41.866 kb on - strand, within GFF2326 at 41.977 kb on + strand at 42.017 kb on + strand at 42.017 kb on + strand at 42.018 kb on - strand at 42.018 kb on - strand at 42.020 kb on + strand at 42.020 kb on + strand at 42.021 kb on - strand at 42.021 kb on - strand at 42.026 kb on + strand at 42.026 kb on + strand at 42.026 kb on + strand at 42.027 kb on - strand at 42.027 kb on - strand at 42.027 kb on - strand at 42.027 kb on - strand at 42.027 kb on - strand at 42.027 kb on - strand at 42.027 kb on - strand at 42.038 kb on + strand at 42.038 kb on + strand at 42.038 kb on + strand at 42.038 kb on + strand at 42.039 kb on - strand at 42.052 kb on + strand at 42.091 kb on + strand at 42.091 kb on + strand at 42.214 kb on + strand at 42.214 kb on + strand at 42.215 kb on - strand at 42.215 kb on - strand at 42.456 kb on + strand, within GFF2327 at 42.926 kb on + strand, within GFF2327 at 42.926 kb on + strand, within GFF2327 at 43.013 kb on + strand, within GFF2327 at 43.096 kb on + strand at 43.096 kb on + strand at 43.165 kb on + strand at 43.193 kb on + strand at 43.194 kb on - strand at 43.196 kb on + strand at 43.196 kb on + strand at 43.226 kb on + strand, within GFF2328 at 43.239 kb on - strand, within GFF2328 at 43.350 kb on + strand, within GFF2328 at 43.350 kb on + strand, within GFF2328 at 43.350 kb on + strand, within GFF2328 at 43.351 kb on - strand, within GFF2328 at 43.357 kb on + strand, within GFF2328 at 43.467 kb on + strand, within GFF2328 at 43.467 kb on + strand, within GFF2328 at 43.513 kb on + strand, within GFF2328
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 41,202 - GFF2325 0.61 -2.3 41,287 + GFF2325 0.76 -1.3 41,287 + GFF2325 0.76 -1.8 41,367 + +0.1 41,367 + -0.2 41,398 + -1.3 41,398 + -0.5 41,398 + -1.8 41,399 - -0.3 41,415 + -0.3 41,415 + -1.6 41,416 - -1.0 41,492 - GFF2326 0.13 -2.3 41,492 - GFF2326 0.13 -1.0 41,498 + GFF2326 0.14 -1.1 41,565 + GFF2326 0.26 -1.0 41,565 + GFF2326 0.26 -0.6 41,566 - GFF2326 0.26 -1.3 41,566 - GFF2326 0.26 -1.0 41,596 + GFF2326 0.31 -0.6 41,596 + GFF2326 0.31 -0.6 41,596 + GFF2326 0.31 +0.4 41,752 - GFF2326 0.58 -0.9 41,866 - GFF2326 0.78 -1.3 41,977 + +0.6 42,017 + -1.8 42,017 + -1.0 42,018 - +0.6 42,018 - -0.3 42,020 + -0.9 42,020 + -1.0 42,021 - -0.0 42,021 - -0.5 42,026 + +0.2 42,026 + -0.4 42,026 + +1.0 42,027 - -1.0 42,027 - -0.3 42,027 - +1.2 42,027 - -0.1 42,027 - -0.7 42,027 - +0.2 42,027 - +1.0 42,038 + -1.0 42,038 + +0.3 42,038 + -0.6 42,038 + +0.4 42,039 - -1.8 42,052 + -0.6 42,091 + -1.2 42,091 + -0.3 42,214 + -0.8 42,214 + -0.6 42,215 - -1.3 42,215 - -1.0 42,456 + GFF2327 0.32 -1.5 42,926 + GFF2327 0.77 -1.3 42,926 + GFF2327 0.77 -1.5 43,013 + GFF2327 0.85 +0.7 43,096 + +1.0 43,096 + -1.3 43,165 + -0.3 43,193 + -0.2 43,194 - -0.3 43,196 + -0.6 43,196 + -0.3 43,226 + GFF2328 0.14 +0.3 43,239 - GFF2328 0.18 -1.5 43,350 + GFF2328 0.46 -1.8 43,350 + GFF2328 0.46 -1.0 43,350 + GFF2328 0.46 +0.3 43,351 - GFF2328 0.46 +0.2 43,357 + GFF2328 0.47 +0.1 43,467 + GFF2328 0.75 -0.2 43,467 + GFF2328 0.75 -0.5 43,513 + GFF2328 0.87 -0.5
Or see this region's nucleotide sequence