Strain Fitness in Methylophilus sp. DMC18 around GFF2323

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2321 and GFF2322 are separated by 28 nucleotidesGFF2322 and GFF2323 are separated by 16 nucleotidesGFF2323 and GFF2324 are separated by 181 nucleotidesGFF2324 and GFF2325 are separated by 59 nucleotides GFF2321 - hypothetical protein, at 38,028 to 38,549 GFF2321 GFF2322 - hypothetical protein, at 38,578 to 38,952 GFF2322 GFF2323 - putative cystine transporter YijE, at 38,969 to 39,889 GFF2323 GFF2324 - Transcriptional regulatory protein PmpR, at 40,071 to 40,799 GFF2324 GFF2325 - Crossover junction endodeoxyribonuclease RuvC, at 40,859 to 41,419 GFF2325 Position (kb) 38 39 40Strain fitness (log2 ratio) -2 -1 0 1at 37.985 kb on - strandat 38.001 kb on - strandat 38.024 kb on + strandat 38.025 kb on - strandat 38.039 kb on + strandat 38.044 kb on + strandat 38.051 kb on + strandat 38.189 kb on + strand, within GFF2321at 38.189 kb on + strand, within GFF2321at 38.258 kb on + strand, within GFF2321at 38.258 kb on + strand, within GFF2321at 38.258 kb on + strand, within GFF2321at 38.258 kb on + strand, within GFF2321at 38.258 kb on + strand, within GFF2321at 38.351 kb on + strand, within GFF2321at 38.351 kb on + strand, within GFF2321at 38.351 kb on + strand, within GFF2321at 38.351 kb on + strand, within GFF2321at 38.351 kb on + strand, within GFF2321at 38.351 kb on + strand, within GFF2321at 38.351 kb on + strand, within GFF2321at 38.351 kb on + strand, within GFF2321at 38.436 kb on + strand, within GFF2321at 38.436 kb on + strand, within GFF2321at 38.439 kb on + strand, within GFF2321at 38.439 kb on + strand, within GFF2321at 38.439 kb on + strand, within GFF2321at 38.439 kb on + strand, within GFF2321at 38.439 kb on + strand, within GFF2321at 38.439 kb on + strand, within GFF2321at 38.459 kb on + strand, within GFF2321at 38.459 kb on + strand, within GFF2321at 38.459 kb on + strand, within GFF2321at 38.459 kb on + strand, within GFF2321at 38.459 kb on + strand, within GFF2321at 38.459 kb on + strand, within GFF2321at 38.459 kb on + strand, within GFF2321at 38.515 kb on + strandat 38.515 kb on + strandat 38.543 kb on + strandat 38.550 kb on + strandat 38.550 kb on + strandat 38.550 kb on + strandat 38.550 kb on + strandat 38.550 kb on + strandat 38.550 kb on + strandat 38.550 kb on + strandat 38.550 kb on + strandat 38.550 kb on + strandat 38.551 kb on - strandat 38.551 kb on - strandat 38.551 kb on - strandat 38.561 kb on + strandat 38.577 kb on + strandat 38.583 kb on + strandat 38.583 kb on + strandat 38.663 kb on + strand, within GFF2322at 38.663 kb on + strand, within GFF2322at 38.663 kb on + strand, within GFF2322at 38.664 kb on - strand, within GFF2322at 38.664 kb on - strand, within GFF2322at 38.665 kb on + strand, within GFF2322at 38.665 kb on + strand, within GFF2322at 38.665 kb on + strand, within GFF2322at 38.665 kb on + strand, within GFF2322at 38.888 kb on + strand, within GFF2322at 38.888 kb on + strand, within GFF2322at 38.888 kb on + strand, within GFF2322at 38.889 kb on - strand, within GFF2322at 38.950 kb on + strandat 38.950 kb on + strandat 38.983 kb on + strandat 39.039 kb on - strandat 39.040 kb on + strandat 39.041 kb on - strandat 39.140 kb on + strand, within GFF2323at 39.140 kb on + strand, within GFF2323at 39.140 kb on + strand, within GFF2323at 39.140 kb on + strand, within GFF2323at 39.279 kb on - strand, within GFF2323at 39.279 kb on - strand, within GFF2323at 39.279 kb on - strand, within GFF2323at 39.280 kb on + strand, within GFF2323at 39.280 kb on + strand, within GFF2323at 39.473 kb on - strand, within GFF2323at 39.473 kb on - strand, within GFF2323at 39.536 kb on - strand, within GFF2323at 39.632 kb on - strand, within GFF2323at 39.642 kb on + strand, within GFF2323at 39.642 kb on + strand, within GFF2323at 39.642 kb on + strand, within GFF2323at 39.643 kb on - strand, within GFF2323at 39.710 kb on - strand, within GFF2323at 39.756 kb on + strand, within GFF2323at 39.855 kb on - strandat 39.863 kb on - strandat 39.938 kb on + strandat 39.938 kb on + strandat 39.938 kb on + strandat 39.939 kb on - strandat 39.956 kb on + strandat 39.957 kb on - strandat 39.957 kb on - strandat 39.969 kb on + strandat 39.970 kb on - strandat 39.970 kb on - strandat 39.970 kb on - strandat 39.970 kb on - strandat 40.070 kb on + strandat 40.082 kb on + strandat 40.083 kb on - strandat 40.083 kb on - strandat 40.085 kb on + strandat 40.085 kb on + strandat 40.196 kb on + strand, within GFF2324at 40.196 kb on + strand, within GFF2324at 40.250 kb on + strand, within GFF2324at 40.265 kb on + strand, within GFF2324at 40.310 kb on + strand, within GFF2324at 40.466 kb on + strand, within GFF2324at 40.466 kb on + strand, within GFF2324at 40.582 kb on + strand, within GFF2324at 40.582 kb on + strand, within GFF2324at 40.582 kb on + strand, within GFF2324at 40.582 kb on + strand, within GFF2324at 40.582 kb on + strand, within GFF2324at 40.582 kb on + strand, within GFF2324at 40.770 kb on + strandat 40.797 kb on + strandat 40.797 kb on + strandat 40.798 kb on - strandat 40.798 kb on - strandat 40.864 kb on + strandat 40.884 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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37,985 - +0.1
38,001 - +0.1
38,024 + +0.3
38,025 - -0.5
38,039 + -0.9
38,044 + +0.1
38,051 + -0.1
38,189 + GFF2321 0.31 +0.1
38,189 + GFF2321 0.31 +0.3
38,258 + GFF2321 0.44 -0.9
38,258 + GFF2321 0.44 -1.5
38,258 + GFF2321 0.44 -0.5
38,258 + GFF2321 0.44 -2.0
38,258 + GFF2321 0.44 -0.1
38,351 + GFF2321 0.62 -0.4
38,351 + GFF2321 0.62 -0.2
38,351 + GFF2321 0.62 -0.6
38,351 + GFF2321 0.62 +0.4
38,351 + GFF2321 0.62 +1.3
38,351 + GFF2321 0.62 -0.0
38,351 + GFF2321 0.62 -0.6
38,351 + GFF2321 0.62 -0.1
38,436 + GFF2321 0.78 -0.8
38,436 + GFF2321 0.78 +1.0
38,439 + GFF2321 0.79 -0.1
38,439 + GFF2321 0.79 +0.1
38,439 + GFF2321 0.79 -1.1
38,439 + GFF2321 0.79 -0.5
38,439 + GFF2321 0.79 -0.5
38,439 + GFF2321 0.79 -0.6
38,459 + GFF2321 0.83 -0.0
38,459 + GFF2321 0.83 -0.6
38,459 + GFF2321 0.83 +0.0
38,459 + GFF2321 0.83 -0.4
38,459 + GFF2321 0.83 -0.2
38,459 + GFF2321 0.83 -0.2
38,459 + GFF2321 0.83 -0.0
38,515 + -0.7
38,515 + +1.3
38,543 + -0.5
38,550 + -0.6
38,550 + -0.0
38,550 + -0.7
38,550 + -0.0
38,550 + -1.2
38,550 + -0.1
38,550 + -0.6
38,550 + -0.4
38,550 + -0.2
38,551 - -0.0
38,551 - -1.3
38,551 - -2.7
38,561 + -1.7
38,577 + -0.3
38,583 + +0.3
38,583 + -1.6
38,663 + GFF2322 0.23 -1.0
38,663 + GFF2322 0.23 -1.6
38,663 + GFF2322 0.23 -1.6
38,664 - GFF2322 0.23 -1.6
38,664 - GFF2322 0.23 -1.3
38,665 + GFF2322 0.23 +0.2
38,665 + GFF2322 0.23 -1.8
38,665 + GFF2322 0.23 -0.4
38,665 + GFF2322 0.23 -0.6
38,888 + GFF2322 0.83 -0.6
38,888 + GFF2322 0.83 -1.0
38,888 + GFF2322 0.83 -0.3
38,889 - GFF2322 0.83 -1.6
38,950 + -2.3
38,950 + +0.1
38,983 + +0.4
39,039 - -1.3
39,040 + -0.1
39,041 - -0.0
39,140 + GFF2323 0.19 -1.3
39,140 + GFF2323 0.19 -0.3
39,140 + GFF2323 0.19 -1.3
39,140 + GFF2323 0.19 -1.8
39,279 - GFF2323 0.34 -1.8
39,279 - GFF2323 0.34 -1.6
39,279 - GFF2323 0.34 -1.3
39,280 + GFF2323 0.34 -1.0
39,280 + GFF2323 0.34 -1.6
39,473 - GFF2323 0.55 -1.0
39,473 - GFF2323 0.55 -1.0
39,536 - GFF2323 0.62 -1.0
39,632 - GFF2323 0.72 -1.0
39,642 + GFF2323 0.73 -1.8
39,642 + GFF2323 0.73 -1.0
39,642 + GFF2323 0.73 -1.0
39,643 - GFF2323 0.73 -2.0
39,710 - GFF2323 0.80 -0.0
39,756 + GFF2323 0.85 -1.0
39,855 - -1.1
39,863 - +0.7
39,938 + -1.0
39,938 + -0.2
39,938 + -0.6
39,939 - -0.7
39,956 + -0.0
39,957 - -1.3
39,957 - -0.9
39,969 + +0.8
39,970 - -2.3
39,970 - -0.0
39,970 - -0.4
39,970 - -0.3
40,070 + -1.0
40,082 + -1.0
40,083 - -0.0
40,083 - -1.0
40,085 + -1.8
40,085 + -1.3
40,196 + GFF2324 0.17 +0.3
40,196 + GFF2324 0.17 -1.3
40,250 + GFF2324 0.25 -1.0
40,265 + GFF2324 0.27 -0.7
40,310 + GFF2324 0.33 -1.6
40,466 + GFF2324 0.54 -0.6
40,466 + GFF2324 0.54 -1.0
40,582 + GFF2324 0.70 -0.0
40,582 + GFF2324 0.70 -0.6
40,582 + GFF2324 0.70 -1.3
40,582 + GFF2324 0.70 +0.7
40,582 + GFF2324 0.70 -2.0
40,582 + GFF2324 0.70 -1.0
40,770 + -1.8
40,797 + -1.8
40,797 + -0.6
40,798 - -1.3
40,798 - +0.1
40,864 + -0.0
40,884 + -1.0

Or see this region's nucleotide sequence