Strain Fitness in Methylophilus sp. DMC18 around GFF2291

Experiment: Methanol (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Methanol (C)
8,894	-		GFF2289	0.11	-0.7
8,896	+		GFF2289	0.12	-0.8
8,896	+		GFF2289	0.12	+0.2
8,896	+		GFF2289	0.12	+1.7
8,897	-		GFF2289	0.12	-0.5
8,915	+		GFF2289	0.15	-1.3
8,915	+		GFF2289	0.15	+0.3
8,915	+		GFF2289	0.15	-0.8
8,915	+		GFF2289	0.15	-1.6
8,915	+		GFF2289	0.15	+0.3
8,915	+		GFF2289	0.15	+0.4
8,916	-		GFF2289	0.15	-1.1
8,917	+		GFF2289	0.15	+0.5
8,917	+		GFF2289	0.15	-0.0
8,917	+		GFF2289	0.15	+0.1
8,917	+		GFF2289	0.15	-0.3
8,918	-		GFF2289	0.15	-0.1
8,918	-		GFF2289	0.15	-0.1
8,918	-		GFF2289	0.15	-1.0
8,918	-		GFF2289	0.15	+0.4
8,918	-		GFF2289	0.15	-0.0
8,934	+		GFF2289	0.18	+1.3
8,935	-		GFF2289	0.18	+0.2
8,935	-		GFF2289	0.18	+0.5
9,023	+		GFF2289	0.32	+0.4
9,023	+		GFF2289	0.32	+0.7
9,023	+		GFF2289	0.32	-0.8
9,023	+		GFF2289	0.32	-2.0
9,023	+		GFF2289	0.32	-0.3
9,023	+		GFF2289	0.32	-1.6
9,023	+		GFF2289	0.32	-0.3
9,024	-		GFF2289	0.33	-0.8
9,024	-		GFF2289	0.33	-0.3
9,024	-		GFF2289	0.33	-0.1
9,024	-		GFF2289	0.33	+0.2
9,024	-		GFF2289	0.33	-0.6
9,024	-		GFF2289	0.33	-0.4
9,024	-		GFF2289	0.33	+0.5
9,059	-		GFF2289	0.38	-0.9
9,059	-		GFF2289	0.38	-0.9
9,068	+		GFF2289	0.40	-0.4
9,068	+		GFF2289	0.40	-1.3
9,068	+		GFF2289	0.40	-0.6
9,068	+		GFF2289	0.40	-0.3
9,069	-		GFF2289	0.40	-1.6
9,069	-		GFF2289	0.40	-0.6
9,069	-		GFF2289	0.40	+0.2
9,069	-		GFF2289	0.40	-0.7
9,069	-		GFF2289	0.40	+0.1
9,069	-		GFF2289	0.40	-0.1
9,069	-		GFF2289	0.40	-1.2
9,069	-		GFF2289	0.40	-1.3
9,069	-		GFF2289	0.40	-0.3
9,075	+		GFF2289	0.41	-0.7
9,076	-		GFF2289	0.41	-0.2
9,086	-		GFF2289	0.43	-0.0
9,229	-		GFF2289	0.66	+0.7
9,229	-		GFF2289	0.66	+0.3
9,285	+		GFF2289	0.75	+0.2
9,360	+		GFF2289	0.87	-0.4
9,361	-		GFF2289	0.88	-0.2
9,416	+				-1.8
9,417	-				-0.0
9,417	-				-2.7
9,459	+				+0.2
9,481	+		GFF2290	0.11	-0.5
9,494	+		GFF2290	0.15	-2.0
9,494	+		GFF2290	0.15	-0.7
9,495	-		GFF2290	0.15	-0.3
9,502	+		GFF2290	0.17	-0.4
9,502	+		GFF2290	0.17	-0.2
9,502	+		GFF2290	0.17	-0.4
9,502	+		GFF2290	0.17	+0.1
9,502	+		GFF2290	0.17	-0.0
9,503	-		GFF2290	0.17	-0.3
9,503	-		GFF2290	0.17	-0.3
9,503	-		GFF2290	0.17	+0.4
9,503	-		GFF2290	0.17	-0.6
9,503	-		GFF2290	0.17	-0.3
9,503	-		GFF2290	0.17	+0.6
9,503	-		GFF2290	0.17	-0.0
9,503	-		GFF2290	0.17	-0.7
9,522	-		GFF2290	0.22	+0.2
9,599	+		GFF2290	0.41	-0.4
9,629	+		GFF2290	0.49	-0.3
9,629	+		GFF2290	0.49	+0.9
9,630	-		GFF2290	0.49	-0.1
9,630	-		GFF2290	0.49	-1.0
9,653	+		GFF2290	0.55	-0.6
9,653	+		GFF2290	0.55	-0.8
9,654	-		GFF2290	0.55	-0.6
9,654	-		GFF2290	0.55	+0.6
9,711	+		GFF2290	0.69	-1.0
9,712	-		GFF2290	0.70	+1.0
9,712	-		GFF2290	0.70	+0.3
9,712	-		GFF2290	0.70	-1.0
9,712	-		GFF2290	0.70	+1.0
9,712	-		GFF2290	0.70	-1.1
9,744	+		GFF2290	0.78	+0.4
9,744	+		GFF2290	0.78	-0.2
9,744	+		GFF2290	0.78	-1.1
9,744	+		GFF2290	0.78	-0.0
9,744	+		GFF2290	0.78	-0.0
9,744	+		GFF2290	0.78	-1.0
9,745	-		GFF2290	0.78	-0.6
9,745	-		GFF2290	0.78	-2.1
9,745	-		GFF2290	0.78	+0.4
9,745	-		GFF2290	0.78	-0.8
9,745	-		GFF2290	0.78	-0.3
9,745	-		GFF2290	0.78	-0.6
9,745	-		GFF2290	0.78	-0.7
9,745	-		GFF2290	0.78	+0.5
9,745	-		GFF2290	0.78	-0.7
9,748	+		GFF2290	0.79	+0.4
9,748	+		GFF2290	0.79	-0.8
9,748	+		GFF2290	0.79	+1.6
9,748	+		GFF2290	0.79	-0.6
9,749	-		GFF2290	0.79	-0.5
9,749	-		GFF2290	0.79	-0.2
9,749	-		GFF2290	0.79	-1.3
9,761	+		GFF2290	0.82	-0.3
9,762	-		GFF2290	0.82	-0.9
9,762	-		GFF2290	0.82	-0.6
9,762	-		GFF2290	0.82	-0.1
9,875	+				-0.1
9,875	+				-0.4
9,875	+				-0.3
9,875	+				+0.6
9,876	-				-0.7
9,879	+				-0.7
9,879	+				-1.4
9,880	-				+0.1
9,880	-				-0.2
9,880	-				-0.3
9,880	-				-0.3
9,880	-				-0.0
9,880	-				+1.3
9,897	+				-0.2
9,897	+				-0.6
9,898	-				-1.6
9,903	-				+0.9
9,903	-				-0.8
9,903	-				+0.3
9,903	-				+0.7
9,912	+				+0.6
9,912	+				-0.6
9,912	+				-1.0
9,913	-				-1.3
9,940	+				-1.7
9,995	+				-1.1
9,995	+				-2.0
9,995	+				+0.3
9,995	+				+0.1
10,050	-		GFF2291	0.11	-0.4
10,050	-		GFF2291	0.11	-1.0
10,165	-		GFF2291	0.18	+1.0
10,165	-		GFF2291	0.18	+1.0
10,165	-		GFF2291	0.18	-0.2
10,178	-		GFF2291	0.19	-1.3
10,178	-		GFF2291	0.19	+0.0
10,221	+		GFF2291	0.22	-0.4
10,222	-		GFF2291	0.22	-0.2
10,222	-		GFF2291	0.22	-0.3
10,255	+		GFF2291	0.24	-0.6
10,256	-		GFF2291	0.24	-1.3
10,256	-		GFF2291	0.24	-0.3
10,259	+		GFF2291	0.24	-0.9
10,259	+		GFF2291	0.24	-0.6
10,260	-		GFF2291	0.24	+1.6
10,276	+		GFF2291	0.25	-0.3
10,276	+		GFF2291	0.25	-1.6
10,276	+		GFF2291	0.25	+0.2
10,276	+		GFF2291	0.25	-0.6
10,276	+		GFF2291	0.25	-0.4
10,277	-		GFF2291	0.25	-0.4
10,277	-		GFF2291	0.25	-2.2
10,277	-		GFF2291	0.25	+0.8
10,277	-		GFF2291	0.25	-1.0
10,277	-		GFF2291	0.25	-0.6
10,277	-		GFF2291	0.25	+0.6
10,333	+		GFF2291	0.29	-1.0
10,395	-		GFF2291	0.33	+0.2
10,396	+		GFF2291	0.33	-0.8
10,397	-		GFF2291	0.33	-1.3
10,397	-		GFF2291	0.33	+0.2
10,397	-		GFF2291	0.33	-1.2
10,440	-		GFF2291	0.35	-0.4
10,478	+		GFF2291	0.38	-1.2
10,478	+		GFF2291	0.38	-0.7
10,478	+		GFF2291	0.38	-1.3
10,479	-		GFF2291	0.38	+0.2
10,479	-		GFF2291	0.38	+0.5
10,480	+		GFF2291	0.38	-0.6
10,480	+		GFF2291	0.38	-1.0
10,481	-		GFF2291	0.38	-0.8
10,481	-		GFF2291	0.38	+0.7
10,481	-		GFF2291	0.38	-0.0
10,541	+		GFF2291	0.41	+0.3
10,558	+		GFF2291	0.43	+0.1
10,558	+		GFF2291	0.43	+1.0
10,559	-		GFF2291	0.43	-0.5
10,559	-		GFF2291	0.43	+1.0
10,571	-		GFF2291	0.43	-0.6
10,585	-		GFF2291	0.44	-0.2
10,642	+		GFF2291	0.48	-0.4
10,642	+		GFF2291	0.48	+0.2
10,642	+		GFF2291	0.48	-0.8
10,642	+		GFF2291	0.48	-0.1
10,642	+		GFF2291	0.48	-0.6
10,643	-		GFF2291	0.48	-0.8
10,643	-		GFF2291	0.48	-0.6
10,643	-		GFF2291	0.48	-0.4
10,657	+		GFF2291	0.49	-1.0
10,658	-		GFF2291	0.49	-0.4
10,658	-		GFF2291	0.49	+0.7
10,658	-		GFF2291	0.49	+1.6
10,658	-		GFF2291	0.49	-0.6
10,658	-		GFF2291	0.49	+1.3
10,658	-		GFF2291	0.49	+0.6
10,658	-		GFF2291	0.49	-2.3
10,733	+		GFF2291	0.53	-0.8
10,734	-		GFF2291	0.53	-0.5
10,752	+		GFF2291	0.54	+0.6
10,753	-		GFF2291	0.54	+0.9
10,753	-		GFF2291	0.54	+1.0
10,888	+		GFF2291	0.63	+0.6
11,020	-		GFF2291	0.71	-0.1
11,020	-		GFF2291	0.71	-0.5
11,020	-		GFF2291	0.71	+0.2
11,020	-		GFF2291	0.71	-0.2
11,037	+		GFF2291	0.72	-0.1
11,038	-		GFF2291	0.72	-1.8
11,038	-		GFF2291	0.72	-0.3
11,038	-		GFF2291	0.72	-1.0
11,038	-		GFF2291	0.72	+0.2
11,224	+		GFF2291	0.83	+1.1
11,225	-		GFF2291	0.83	+0.2
11,225	-		GFF2291	0.83	+0.2
11,225	-		GFF2291	0.83	+1.7
11,264	+		GFF2291	0.86	-2.2
11,277	+		GFF2291	0.87	+1.0
11,314	+		GFF2291	0.89	+0.1
11,314	+		GFF2291	0.89	-0.2
11,314	+		GFF2291	0.89	+1.2
11,315	-		GFF2291	0.89	-0.8
11,315	-		GFF2291	0.89	-0.4
11,315	-		GFF2291	0.89	-0.2
11,315	-		GFF2291	0.89	-0.3
11,315	-		GFF2291	0.89	-0.1
11,315	-		GFF2291	0.89	-1.5
11,315	-		GFF2291	0.89	-0.4
11,315	-		GFF2291	0.89	-1.2
11,320	+		GFF2291	0.89	-0.3
11,320	+		GFF2291	0.89	-2.0
11,320	+		GFF2291	0.89	-0.0
11,320	+		GFF2291	0.89	-1.3
11,320	+		GFF2291	0.89	+0.3
11,320	+		GFF2291	0.89	+1.0
11,320	+		GFF2291	0.89	-0.6
11,320	+		GFF2291	0.89	-0.3
11,320	+		GFF2291	0.89	+0.5
11,320	+		GFF2291	0.89	-1.5
11,320	+		GFF2291	0.89	-0.3
11,320	+		GFF2291	0.89	-1.6
11,321	-		GFF2291	0.89	-0.0
11,321	-		GFF2291	0.89	-1.3
11,321	-		GFF2291	0.89	+0.4
11,321	-		GFF2291	0.89	-0.4
11,321	-		GFF2291	0.89	-0.2
11,321	-		GFF2291	0.89	-0.4
11,321	-		GFF2291	0.89	+0.1
11,321	-		GFF2291	0.89	+0.3
11,321	-		GFF2291	0.89	-0.6
11,321	-		GFF2291	0.89	-0.6
11,321	-		GFF2291	0.89	+0.6
11,321	-		GFF2291	0.89	-1.0
11,321	-		GFF2291	0.89	-0.9
11,321	-		GFF2291	0.89	-0.0
11,321	-		GFF2291	0.89	-0.0
11,321	-		GFF2291	0.89	+0.3
11,321	-		GFF2291	0.89	-1.0
11,321	-		GFF2291	0.89	-0.9
11,321	-		GFF2291	0.89	+1.2
11,321	-		GFF2291	0.89	-0.3
11,326	-		GFF2291	0.90	-0.4
11,360	+				-0.1
11,450	+				-1.0
11,450	+				-0.2
11,451	-				+0.5
11,451	-				-1.0
11,451	-				-0.0
11,451	-				+0.3
11,496	-				-0.8
11,496	-				+0.3
11,496	-				-0.0
11,511	-				+0.3
11,514	+				+0.4
11,525	+				-1.3
11,525	+				-0.0
11,530	+				-0.6
11,531	-				-0.1
11,531	-				+0.7
11,531	-				-0.4
11,536	-				-1.5
11,536	-				-0.3
11,551	-				+0.6
11,602	+				+0.5
11,603	-				-0.0
11,604	+				-0.4
11,604	+				-1.0
11,605	-				-0.1
11,605	-				-0.8
11,613	+				-0.4
11,613	+				-0.2
11,613	+				-0.9
11,613	+				+0.0
11,614	-				+0.3
11,614	-				-1.6
11,614	-				-0.2
11,636	+				+1.0
11,636	+				-0.2
11,636	+				+0.2
11,637	-				+0.7
11,637	-				-0.8
11,640	+				-0.0
11,649	+				+1.0
11,669	+				-0.1
11,669	+				+0.5
11,669	+				+0.3
11,669	+				-0.2
11,704	+				+0.1
11,704	+				-0.8
11,704	+				-0.6
11,704	+				-0.5
11,705	-				-0.7
11,705	-				-0.0
11,705	-				-0.4
11,705	-				+0.5
11,705	-				+0.6
11,705	-				-0.1
11,705	-				-0.1
11,742	-		GFF2292	0.11	-0.9
11,742	-		GFF2292	0.11	+0.6
11,812	+		GFF2292	0.17	+0.6
11,907	+		GFF2292	0.25	+0.6
11,907	+		GFF2292	0.25	-0.1
11,907	+		GFF2292	0.25	-1.3
11,907	+		GFF2292	0.25	-1.0
11,979	+		GFF2292	0.31	-0.3
11,980	-		GFF2292	0.32	+0.4
11,980	-		GFF2292	0.32	-2.0
12,033	-		GFF2292	0.36	-1.3
12,066	+		GFF2292	0.39	-0.0
12,067	-		GFF2292	0.39	-0.5
12,173	+		GFF2292	0.48	-0.4
12,173	+		GFF2292	0.48	+0.3
12,174	-		GFF2292	0.48	-2.2
12,180	+		GFF2292	0.49	-1.4
12,181	-		GFF2292	0.49	-0.6
12,181	-		GFF2292	0.49	+0.3
12,181	-		GFF2292	0.49	-1.2
12,181	-		GFF2292	0.49	-0.8
12,181	-		GFF2292	0.49	-0.2
12,219	+		GFF2292	0.52	+0.1
12,260	+		GFF2292	0.56	-1.0
12,261	-		GFF2292	0.56	+0.3
12,264	+		GFF2292	0.56	-0.2
12,273	+		GFF2292	0.57	-0.2
12,274	-		GFF2292	0.57	-0.9
12,274	-		GFF2292	0.57	+0.1
12,335	-		GFF2292	0.62	-0.1
12,335	-		GFF2292	0.62	-0.2
12,350	-		GFF2292	0.63	-1.0
12,430	+		GFF2292	0.70	+1.1
12,430	+		GFF2292	0.70	-0.9
12,458	+		GFF2292	0.73	+1.3
12,459	-		GFF2292	0.73	-0.9
12,474	+		GFF2292	0.74	-1.0
12,474	+		GFF2292	0.74	-0.4
12,474	+		GFF2292	0.74	+0.1
12,475	-		GFF2292	0.74	-2.0
12,475	-		GFF2292	0.74	+0.3
12,481	-		GFF2292	0.75	-0.5