Strain Fitness in Methylophilus sp. DMC18 around GFF229

Experiment: Methanol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF228 and GFF229 are separated by 104 nucleotidesGFF229 and GFF230 are separated by 124 nucleotidesGFF230 and GFF231 overlap by 4 nucleotides GFF228 - HTH-type transcriptional regulator MetR, at 238,248 to 239,126 GFF228 GFF229 - 5-methyltetrahydropteroyltriglutamate--homocystei ne methyltransferase, at 239,231 to 241,528 GFF229 GFF230 - hypothetical protein, at 241,653 to 242,207 GFF230 GFF231 - hypothetical protein, at 242,204 to 243,052 GFF231 Position (kb) 239 240 241 242Strain fitness (log2 ratio) -2 -1 0 1at 238.246 kb on + strandat 238.246 kb on + strandat 238.246 kb on + strandat 238.247 kb on - strandat 238.247 kb on - strandat 238.249 kb on + strandat 238.250 kb on - strandat 238.250 kb on - strandat 238.250 kb on - strandat 238.250 kb on - strandat 238.269 kb on - strandat 238.278 kb on + strandat 238.279 kb on - strandat 238.279 kb on - strandat 238.279 kb on - strandat 238.283 kb on - strandat 238.294 kb on - strandat 238.294 kb on - strandat 238.294 kb on - strandat 238.294 kb on - strandat 238.315 kb on - strandat 238.315 kb on - strandat 238.449 kb on - strand, within GFF228at 238.449 kb on - strand, within GFF228at 238.469 kb on + strand, within GFF228at 238.470 kb on - strand, within GFF228at 238.673 kb on - strand, within GFF228at 238.817 kb on - strand, within GFF228at 239.122 kb on - strandat 239.122 kb on - strandat 239.122 kb on - strandat 239.132 kb on + strandat 239.136 kb on + strandat 239.196 kb on + strandat 239.196 kb on + strandat 239.197 kb on - strandat 239.504 kb on + strand, within GFF229at 239.610 kb on - strand, within GFF229at 239.615 kb on + strand, within GFF229at 240.031 kb on + strand, within GFF229at 240.257 kb on - strand, within GFF229at 240.659 kb on - strand, within GFF229at 240.832 kb on + strand, within GFF229at 241.180 kb on + strand, within GFF229at 241.181 kb on - strand, within GFF229at 241.248 kb on + strand, within GFF229at 241.328 kb on + strandat 241.483 kb on + strandat 241.537 kb on - strandat 241.539 kb on + strandat 241.549 kb on + strandat 241.561 kb on + strandat 241.561 kb on + strandat 241.561 kb on + strandat 241.562 kb on - strandat 241.574 kb on + strandat 241.608 kb on - strandat 241.615 kb on + strandat 241.645 kb on - strandat 241.670 kb on - strandat 241.743 kb on + strand, within GFF230at 241.743 kb on + strand, within GFF230at 241.743 kb on + strand, within GFF230at 241.743 kb on + strand, within GFF230at 241.744 kb on - strand, within GFF230at 241.744 kb on - strand, within GFF230at 241.744 kb on - strand, within GFF230at 241.767 kb on + strand, within GFF230at 241.768 kb on - strand, within GFF230at 241.768 kb on - strand, within GFF230at 241.768 kb on - strand, within GFF230at 241.768 kb on - strand, within GFF230at 242.014 kb on + strand, within GFF230at 242.044 kb on + strand, within GFF230at 242.044 kb on + strand, within GFF230at 242.044 kb on + strand, within GFF230at 242.044 kb on + strand, within GFF230at 242.044 kb on + strand, within GFF230at 242.044 kb on + strand, within GFF230at 242.044 kb on + strand, within GFF230at 242.044 kb on + strand, within GFF230at 242.045 kb on - strand, within GFF230at 242.045 kb on - strand, within GFF230at 242.045 kb on - strand, within GFF230at 242.133 kb on - strand, within GFF230at 242.144 kb on + strand, within GFF230at 242.145 kb on - strand, within GFF230at 242.145 kb on - strand, within GFF230at 242.204 kb on - strandat 242.204 kb on - strandat 242.358 kb on + strand, within GFF231at 242.411 kb on + strand, within GFF231

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
remove
238,246 + +0.0
238,246 + +1.5
238,246 + -1.3
238,247 - +1.3
238,247 - +0.8
238,249 + -1.3
238,250 - +1.0
238,250 - +0.2
238,250 - +0.1
238,250 - -1.0
238,269 - -1.0
238,278 + -2.3
238,279 - -1.0
238,279 - -0.8
238,279 - -2.2
238,283 - -0.3
238,294 - -1.3
238,294 - -1.0
238,294 - -1.0
238,294 - -0.3
238,315 - -1.0
238,315 - -1.0
238,449 - GFF228 0.23 -2.0
238,449 - GFF228 0.23 +0.0
238,469 + GFF228 0.25 -1.3
238,470 - GFF228 0.25 -1.3
238,673 - GFF228 0.48 -1.8
238,817 - GFF228 0.65 -1.0
239,122 - -1.0
239,122 - +0.0
239,122 - -1.0
239,132 + -0.3
239,136 + -1.0
239,196 + +0.0
239,196 + -1.3
239,197 - +0.0
239,504 + GFF229 0.12 -1.0
239,610 - GFF229 0.16 +0.0
239,615 + GFF229 0.17 -1.8
240,031 + GFF229 0.35 -1.0
240,257 - GFF229 0.45 -1.3
240,659 - GFF229 0.62 -0.3
240,832 + GFF229 0.70 +0.0
241,180 + GFF229 0.85 -1.3
241,181 - GFF229 0.85 -1.0
241,248 + GFF229 0.88 -1.3
241,328 + -1.0
241,483 + -1.0
241,537 - -0.6
241,539 + -0.5
241,549 + +0.0
241,561 + +0.5
241,561 + +0.5
241,561 + -1.1
241,562 - -0.5
241,574 + -0.5
241,608 - -0.5
241,615 + -1.6
241,645 - -0.5
241,670 - -1.3
241,743 + GFF230 0.16 -1.6
241,743 + GFF230 0.16 +0.0
241,743 + GFF230 0.16 +0.0
241,743 + GFF230 0.16 +0.6
241,744 - GFF230 0.16 -1.0
241,744 - GFF230 0.16 -0.4
241,744 - GFF230 0.16 +0.4
241,767 + GFF230 0.21 +0.6
241,768 - GFF230 0.21 +0.7
241,768 - GFF230 0.21 -1.0
241,768 - GFF230 0.21 -1.8
241,768 - GFF230 0.21 +1.0
242,014 + GFF230 0.65 -0.7
242,044 + GFF230 0.70 -0.9
242,044 + GFF230 0.70 -0.4
242,044 + GFF230 0.70 -0.2
242,044 + GFF230 0.70 -0.9
242,044 + GFF230 0.70 +0.6
242,044 + GFF230 0.70 -2.0
242,044 + GFF230 0.70 +0.6
242,044 + GFF230 0.70 -0.2
242,045 - GFF230 0.71 -0.6
242,045 - GFF230 0.71 -0.5
242,045 - GFF230 0.71 -0.8
242,133 - GFF230 0.86 -0.6
242,144 + GFF230 0.88 -0.5
242,145 - GFF230 0.89 +0.0
242,145 - GFF230 0.89 -0.7
242,204 - -1.8
242,204 - +0.0
242,358 + GFF231 0.18 -0.8
242,411 + GFF231 0.24 -1.4

Or see this region's nucleotide sequence