Strain Fitness in Methylophilus sp. DMC18 around GFF2282

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2282 and GFF2283 are separated by 106 nucleotides GFF2282 - Cyclic pyranopterin monophosphate synthase, at 119 to 610 GFF2282 GFF2283 - Beta-barrel assembly-enhancing protease, at 717 to 2,297 GFF2283 Position (kb) 0 1Strain fitness (log2 ratio) -2 -1 0 1at 0.069 kb on + strandat 0.069 kb on + strandat 0.089 kb on + strandat 0.112 kb on - strandat 0.115 kb on + strandat 0.115 kb on + strandat 0.116 kb on - strandat 0.116 kb on - strandat 0.116 kb on - strandat 0.121 kb on - strandat 0.182 kb on + strand, within GFF2282at 0.182 kb on + strand, within GFF2282at 0.182 kb on + strand, within GFF2282at 0.182 kb on + strand, within GFF2282at 0.182 kb on + strand, within GFF2282at 0.182 kb on + strand, within GFF2282at 0.182 kb on + strand, within GFF2282at 0.183 kb on - strand, within GFF2282at 0.183 kb on - strand, within GFF2282at 0.183 kb on - strand, within GFF2282at 0.183 kb on - strand, within GFF2282at 0.183 kb on - strand, within GFF2282at 0.183 kb on - strand, within GFF2282at 0.183 kb on - strand, within GFF2282at 0.183 kb on - strand, within GFF2282at 0.183 kb on - strand, within GFF2282at 0.183 kb on - strand, within GFF2282at 0.183 kb on - strand, within GFF2282at 0.183 kb on - strand, within GFF2282at 0.183 kb on - strand, within GFF2282at 0.183 kb on - strand, within GFF2282at 0.190 kb on + strand, within GFF2282at 0.209 kb on - strand, within GFF2282at 0.209 kb on - strand, within GFF2282at 0.284 kb on - strand, within GFF2282at 0.307 kb on + strand, within GFF2282at 0.307 kb on + strand, within GFF2282at 0.307 kb on + strand, within GFF2282at 0.307 kb on + strand, within GFF2282at 0.307 kb on + strand, within GFF2282at 0.307 kb on + strand, within GFF2282at 0.307 kb on + strand, within GFF2282at 0.308 kb on - strand, within GFF2282at 0.308 kb on - strand, within GFF2282at 0.308 kb on - strand, within GFF2282at 0.308 kb on - strand, within GFF2282at 0.308 kb on - strand, within GFF2282at 0.308 kb on - strand, within GFF2282at 0.308 kb on - strand, within GFF2282at 0.308 kb on - strand, within GFF2282at 0.308 kb on - strand, within GFF2282at 0.308 kb on - strand, within GFF2282at 0.308 kb on - strand, within GFF2282at 0.308 kb on - strand, within GFF2282at 0.308 kb on - strand, within GFF2282at 0.308 kb on - strand, within GFF2282at 0.308 kb on - strand, within GFF2282at 0.308 kb on - strand, within GFF2282at 0.310 kb on + strand, within GFF2282at 0.310 kb on + strand, within GFF2282at 0.311 kb on - strand, within GFF2282at 0.311 kb on - strand, within GFF2282at 0.347 kb on + strand, within GFF2282at 0.348 kb on - strand, within GFF2282at 0.348 kb on - strand, within GFF2282at 0.356 kb on + strand, within GFF2282at 0.556 kb on + strand, within GFF2282at 0.556 kb on + strand, within GFF2282at 0.557 kb on - strand, within GFF2282at 0.557 kb on - strand, within GFF2282at 0.577 kb on + strandat 0.610 kb on + strandat 0.610 kb on + strandat 0.610 kb on + strandat 0.611 kb on - strandat 0.611 kb on - strandat 0.611 kb on - strandat 0.611 kb on - strandat 0.611 kb on - strandat 0.611 kb on - strandat 0.611 kb on - strandat 0.611 kb on - strandat 0.611 kb on - strandat 0.687 kb on + strandat 0.726 kb on - strandat 0.743 kb on - strandat 0.743 kb on - strandat 0.766 kb on + strandat 0.766 kb on + strandat 0.766 kb on + strandat 0.766 kb on + strandat 0.766 kb on + strandat 0.767 kb on - strandat 0.767 kb on - strandat 0.767 kb on - strandat 1.123 kb on + strand, within GFF2283at 1.123 kb on + strand, within GFF2283at 1.187 kb on - strand, within GFF2283at 1.271 kb on + strand, within GFF2283at 1.272 kb on - strand, within GFF2283at 1.295 kb on + strand, within GFF2283at 1.295 kb on + strand, within GFF2283at 1.296 kb on - strand, within GFF2283at 1.296 kb on - strand, within GFF2283at 1.544 kb on + strand, within GFF2283at 1.554 kb on + strand, within GFF2283at 1.596 kb on - strand, within GFF2283at 1.597 kb on + strand, within GFF2283at 1.597 kb on + strand, within GFF2283at 1.598 kb on - strand, within GFF2283at 1.609 kb on + strand, within GFF2283

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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69 + -1.6
69 + -1.3
89 + -1.2
112 - +0.3
115 + -0.9
115 + -0.2
116 - -0.1
116 - -1.3
116 - -0.5
121 - -0.8
182 + GFF2282 0.13 -0.8
182 + GFF2282 0.13 -1.3
182 + GFF2282 0.13 +0.6
182 + GFF2282 0.13 -0.9
182 + GFF2282 0.13 -0.6
182 + GFF2282 0.13 -1.3
182 + GFF2282 0.13 -0.8
183 - GFF2282 0.13 -0.8
183 - GFF2282 0.13 -1.0
183 - GFF2282 0.13 -1.3
183 - GFF2282 0.13 -2.0
183 - GFF2282 0.13 -0.0
183 - GFF2282 0.13 -1.9
183 - GFF2282 0.13 -1.2
183 - GFF2282 0.13 -1.8
183 - GFF2282 0.13 -1.6
183 - GFF2282 0.13 -1.0
183 - GFF2282 0.13 -0.7
183 - GFF2282 0.13 -1.0
183 - GFF2282 0.13 -1.0
183 - GFF2282 0.13 -1.6
190 + GFF2282 0.14 -1.3
209 - GFF2282 0.18 -1.0
209 - GFF2282 0.18 -0.2
284 - GFF2282 0.34 -2.1
307 + GFF2282 0.38 -0.3
307 + GFF2282 0.38 +0.4
307 + GFF2282 0.38 -0.4
307 + GFF2282 0.38 +0.7
307 + GFF2282 0.38 +0.6
307 + GFF2282 0.38 -0.0
307 + GFF2282 0.38 -0.0
308 - GFF2282 0.38 -2.2
308 - GFF2282 0.38 +0.3
308 - GFF2282 0.38 -1.0
308 - GFF2282 0.38 -0.8
308 - GFF2282 0.38 -1.0
308 - GFF2282 0.38 +0.6
308 - GFF2282 0.38 -0.7
308 - GFF2282 0.38 -0.9
308 - GFF2282 0.38 -1.8
308 - GFF2282 0.38 -1.3
308 - GFF2282 0.38 -0.0
308 - GFF2282 0.38 -1.6
308 - GFF2282 0.38 -1.0
308 - GFF2282 0.38 -0.2
308 - GFF2282 0.38 -0.9
308 - GFF2282 0.38 -1.0
310 + GFF2282 0.39 -1.5
310 + GFF2282 0.39 -0.6
311 - GFF2282 0.39 -1.0
311 - GFF2282 0.39 -0.7
347 + GFF2282 0.46 -1.3
348 - GFF2282 0.47 -0.3
348 - GFF2282 0.47 -1.8
356 + GFF2282 0.48 +0.1
556 + GFF2282 0.89 -1.0
556 + GFF2282 0.89 +0.1
557 - GFF2282 0.89 -1.0
557 - GFF2282 0.89 -0.8
577 + -0.7
610 + +0.1
610 + -0.9
610 + -1.0
611 - -1.0
611 - -0.3
611 - -1.7
611 - -2.0
611 - -1.0
611 - -0.3
611 - -0.3
611 - -2.3
611 - -1.9
687 + -0.3
726 - -1.0
743 - -0.2
743 - -1.0
766 + +1.0
766 + -1.6
766 + -1.6
766 + -1.6
766 + -0.7
767 - -1.0
767 - -0.0
767 - -0.2
1,123 + GFF2283 0.26 -1.3
1,123 + GFF2283 0.26 +0.7
1,187 - GFF2283 0.30 -1.0
1,271 + GFF2283 0.35 -1.0
1,272 - GFF2283 0.35 -1.0
1,295 + GFF2283 0.37 -1.0
1,295 + GFF2283 0.37 +0.3
1,296 - GFF2283 0.37 -1.6
1,296 - GFF2283 0.37 -1.0
1,544 + GFF2283 0.52 -0.0
1,554 + GFF2283 0.53 -1.3
1,596 - GFF2283 0.56 -0.0
1,597 + GFF2283 0.56 -0.0
1,597 + GFF2283 0.56 -0.3
1,598 - GFF2283 0.56 -1.0
1,609 + GFF2283 0.56 -1.0

Or see this region's nucleotide sequence