Strain Fitness in Methylophilus sp. DMC18 around GFF2265

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2263 and GFF2264 are separated by 15 nucleotidesGFF2264 and GFF2265 are separated by 11 nucleotidesGFF2265 and GFF2266 are separated by 21 nucleotidesGFF2266 and GFF2267 are separated by 19 nucleotides GFF2263 - Phosphoenolpyruvate-protein phosphotransferase, at 328,542 to 330,278 GFF2263 GFF2264 - Phosphocarrier protein HPr, at 330,294 to 330,563 GFF2264 GFF2265 - PTS system mannose-specific EIIAB component, at 330,575 to 330,982 GFF2265 GFF2266 - RNase adapter protein RapZ, at 331,004 to 331,885 GFF2266 GFF2267 - HPr kinase/phosphorylase, at 331,905 to 332,855 GFF2267 Position (kb) 330 331Strain fitness (log2 ratio) -2 -1 0 1at 329.705 kb on + strand, within GFF2263at 329.727 kb on - strand, within GFF2263at 329.727 kb on - strand, within GFF2263at 329.951 kb on + strand, within GFF2263at 330.000 kb on - strand, within GFF2263at 330.005 kb on + strand, within GFF2263at 330.015 kb on - strand, within GFF2263at 330.051 kb on + strand, within GFF2263at 330.051 kb on + strand, within GFF2263at 330.052 kb on - strand, within GFF2263at 330.065 kb on + strand, within GFF2263at 330.065 kb on + strand, within GFF2263at 330.066 kb on - strand, within GFF2263at 330.075 kb on + strand, within GFF2263at 330.076 kb on - strand, within GFF2263at 330.076 kb on - strand, within GFF2263at 330.076 kb on - strand, within GFF2263at 330.262 kb on - strandat 330.281 kb on + strandat 330.282 kb on - strandat 330.282 kb on - strandat 330.282 kb on - strandat 330.295 kb on + strandat 330.296 kb on - strandat 330.422 kb on + strand, within GFF2264at 330.533 kb on + strand, within GFF2264at 330.533 kb on + strand, within GFF2264at 330.534 kb on - strand, within GFF2264at 330.568 kb on + strandat 330.577 kb on - strandat 330.577 kb on - strandat 330.675 kb on + strand, within GFF2265at 330.676 kb on - strand, within GFF2265at 330.777 kb on + strand, within GFF2265at 330.777 kb on + strand, within GFF2265at 330.777 kb on + strand, within GFF2265at 330.777 kb on + strand, within GFF2265at 330.778 kb on - strand, within GFF2265at 330.781 kb on + strand, within GFF2265at 330.781 kb on + strand, within GFF2265at 330.782 kb on - strand, within GFF2265at 330.782 kb on - strand, within GFF2265at 330.782 kb on - strand, within GFF2265at 330.849 kb on - strand, within GFF2265at 330.885 kb on + strand, within GFF2265at 330.982 kb on + strandat 330.982 kb on + strandat 330.982 kb on + strandat 330.983 kb on - strandat 330.983 kb on - strandat 330.983 kb on - strandat 330.988 kb on + strandat 331.078 kb on - strandat 331.149 kb on + strand, within GFF2266at 331.150 kb on - strand, within GFF2266at 331.150 kb on - strand, within GFF2266at 331.194 kb on + strand, within GFF2266at 331.195 kb on - strand, within GFF2266at 331.195 kb on - strand, within GFF2266at 331.195 kb on - strand, within GFF2266at 331.254 kb on - strand, within GFF2266at 331.275 kb on + strand, within GFF2266at 331.276 kb on - strand, within GFF2266at 331.297 kb on - strand, within GFF2266at 331.361 kb on - strand, within GFF2266at 331.413 kb on + strand, within GFF2266at 331.504 kb on + strand, within GFF2266at 331.538 kb on - strand, within GFF2266at 331.538 kb on - strand, within GFF2266at 331.538 kb on - strand, within GFF2266at 331.538 kb on - strand, within GFF2266at 331.721 kb on - strand, within GFF2266at 331.755 kb on - strand, within GFF2266at 331.807 kb on - strandat 331.847 kb on - strandat 331.892 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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329,705 + GFF2263 0.67 -1.9
329,727 - GFF2263 0.68 -0.6
329,727 - GFF2263 0.68 -1.0
329,951 + GFF2263 0.81 +0.1
330,000 - GFF2263 0.84 +0.0
330,005 + GFF2263 0.84 -2.5
330,015 - GFF2263 0.85 +0.4
330,051 + GFF2263 0.87 +0.9
330,051 + GFF2263 0.87 -2.4
330,052 - GFF2263 0.87 -0.4
330,065 + GFF2263 0.88 -0.1
330,065 + GFF2263 0.88 +0.5
330,066 - GFF2263 0.88 -0.1
330,075 + GFF2263 0.88 -0.5
330,076 - GFF2263 0.88 +0.5
330,076 - GFF2263 0.88 -1.4
330,076 - GFF2263 0.88 +0.3
330,262 - -0.2
330,281 + -1.4
330,282 - -0.5
330,282 - -1.0
330,282 - -0.1
330,295 + -0.8
330,296 - +0.2
330,422 + GFF2264 0.47 -1.4
330,533 + GFF2264 0.89 -0.1
330,533 + GFF2264 0.89 -0.3
330,534 - GFF2264 0.89 -1.1
330,568 + +0.6
330,577 - -1.9
330,577 - +0.8
330,675 + GFF2265 0.25 -1.4
330,676 - GFF2265 0.25 -1.1
330,777 + GFF2265 0.50 -0.9
330,777 + GFF2265 0.50 +0.5
330,777 + GFF2265 0.50 -1.4
330,777 + GFF2265 0.50 -0.1
330,778 - GFF2265 0.50 -1.3
330,781 + GFF2265 0.50 -1.4
330,781 + GFF2265 0.50 -0.1
330,782 - GFF2265 0.51 -1.1
330,782 - GFF2265 0.51 -1.4
330,782 - GFF2265 0.51 -0.2
330,849 - GFF2265 0.67 -2.2
330,885 + GFF2265 0.76 -0.4
330,982 + -1.1
330,982 + -0.3
330,982 + -2.1
330,983 - -1.6
330,983 - -1.6
330,983 - +0.2
330,988 + -2.1
331,078 - +0.6
331,149 + GFF2266 0.16 -1.1
331,150 - GFF2266 0.17 -1.9
331,150 - GFF2266 0.17 -2.2
331,194 + GFF2266 0.22 -1.1
331,195 - GFF2266 0.22 +0.5
331,195 - GFF2266 0.22 -1.1
331,195 - GFF2266 0.22 -0.4
331,254 - GFF2266 0.28 -2.5
331,275 + GFF2266 0.31 -0.1
331,276 - GFF2266 0.31 -0.1
331,297 - GFF2266 0.33 -0.5
331,361 - GFF2266 0.40 -1.9
331,413 + GFF2266 0.46 -1.1
331,504 + GFF2266 0.57 -1.1
331,538 - GFF2266 0.61 -1.0
331,538 - GFF2266 0.61 -0.1
331,538 - GFF2266 0.61 +0.5
331,538 - GFF2266 0.61 +0.2
331,721 - GFF2266 0.81 +0.2
331,755 - GFF2266 0.85 -1.4
331,807 - -0.9
331,847 - -1.1
331,892 - -1.1

Or see this region's nucleotide sequence