Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2175 and GFF2176 are separated by 58 nucleotides GFF2176 and GFF2177 overlap by 11 nucleotides GFF2177 and GFF2178 are separated by 13 nucleotides GFF2178 and GFF2179 are separated by 41 nucleotides
GFF2175 - hypothetical protein, at 224,549 to 225,874
GFF2175
GFF2176 - Lipoyl synthase, at 225,933 to 226,913
GFF2176
GFF2177 - Octanoyltransferase, at 226,903 to 227,517
GFF2177
GFF2178 - hypothetical protein, at 227,531 to 227,818
GFF2178
GFF2179 - D-alanyl-D-alanine carboxypeptidase DacC, at 227,860 to 229,008
GFF2179
Position (kb) 225
226
227 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 225.037 kb on - strand, within GFF2175 at 225.152 kb on + strand, within GFF2175 at 225.208 kb on - strand, within GFF2175 at 225.208 kb on - strand, within GFF2175 at 225.208 kb on - strand, within GFF2175 at 225.254 kb on + strand, within GFF2175 at 225.255 kb on - strand, within GFF2175 at 225.315 kb on + strand, within GFF2175 at 225.450 kb on - strand, within GFF2175 at 225.542 kb on - strand, within GFF2175 at 225.550 kb on - strand, within GFF2175 at 225.552 kb on + strand, within GFF2175 at 225.553 kb on - strand, within GFF2175 at 225.553 kb on - strand, within GFF2175 at 225.553 kb on - strand, within GFF2175 at 225.848 kb on + strand at 225.860 kb on + strand at 225.861 kb on - strand at 225.893 kb on + strand at 225.893 kb on + strand at 225.894 kb on - strand at 225.894 kb on - strand at 225.898 kb on + strand at 225.899 kb on - strand at 225.899 kb on - strand at 225.934 kb on + strand at 225.935 kb on - strand at 225.935 kb on - strand at 225.971 kb on - strand at 225.971 kb on - strand at 226.035 kb on - strand, within GFF2176 at 226.064 kb on - strand, within GFF2176 at 226.064 kb on - strand, within GFF2176 at 226.064 kb on - strand, within GFF2176 at 226.064 kb on - strand, within GFF2176 at 226.103 kb on - strand, within GFF2176 at 226.103 kb on - strand, within GFF2176 at 226.103 kb on - strand, within GFF2176 at 226.103 kb on - strand, within GFF2176 at 226.223 kb on - strand, within GFF2176 at 226.292 kb on - strand, within GFF2176 at 226.292 kb on - strand, within GFF2176 at 226.317 kb on - strand, within GFF2176 at 226.508 kb on - strand, within GFF2176 at 226.508 kb on - strand, within GFF2176 at 226.508 kb on - strand, within GFF2176 at 226.978 kb on - strand, within GFF2177 at 227.048 kb on - strand, within GFF2177 at 227.048 kb on - strand, within GFF2177 at 227.060 kb on - strand, within GFF2177 at 227.060 kb on - strand, within GFF2177 at 227.082 kb on - strand, within GFF2177 at 227.135 kb on - strand, within GFF2177 at 227.135 kb on - strand, within GFF2177 at 227.135 kb on - strand, within GFF2177 at 227.139 kb on - strand, within GFF2177 at 227.139 kb on - strand, within GFF2177 at 227.139 kb on - strand, within GFF2177 at 227.139 kb on - strand, within GFF2177 at 227.197 kb on + strand, within GFF2177 at 227.198 kb on - strand, within GFF2177 at 227.270 kb on + strand, within GFF2177 at 227.270 kb on + strand, within GFF2177 at 227.270 kb on + strand, within GFF2177 at 227.271 kb on - strand, within GFF2177 at 227.274 kb on + strand, within GFF2177 at 227.298 kb on - strand, within GFF2177 at 227.298 kb on - strand, within GFF2177 at 227.298 kb on - strand, within GFF2177 at 227.298 kb on - strand, within GFF2177 at 227.320 kb on + strand, within GFF2177 at 227.382 kb on + strand, within GFF2177 at 227.383 kb on - strand, within GFF2177 at 227.384 kb on + strand, within GFF2177 at 227.385 kb on - strand, within GFF2177 at 227.424 kb on + strand, within GFF2177 at 227.425 kb on - strand, within GFF2177 at 227.447 kb on + strand, within GFF2177 at 227.447 kb on + strand, within GFF2177 at 227.447 kb on + strand, within GFF2177 at 227.447 kb on + strand, within GFF2177 at 227.448 kb on - strand, within GFF2177 at 227.448 kb on - strand, within GFF2177 at 227.448 kb on - strand, within GFF2177 at 227.477 kb on + strand at 227.477 kb on + strand at 227.533 kb on - strand at 227.533 kb on - strand at 227.534 kb on + strand at 227.535 kb on - strand at 227.535 kb on - strand at 227.535 kb on - strand at 227.535 kb on - strand at 227.575 kb on - strand, within GFF2178 at 227.578 kb on + strand, within GFF2178 at 227.578 kb on + strand, within GFF2178 at 227.578 kb on + strand, within GFF2178 at 227.578 kb on + strand, within GFF2178 at 227.578 kb on + strand, within GFF2178 at 227.578 kb on + strand, within GFF2178 at 227.579 kb on - strand, within GFF2178 at 227.579 kb on - strand, within GFF2178 at 227.579 kb on - strand, within GFF2178 at 227.607 kb on + strand, within GFF2178 at 227.607 kb on + strand, within GFF2178 at 227.607 kb on + strand, within GFF2178 at 227.608 kb on - strand, within GFF2178 at 227.608 kb on - strand, within GFF2178 at 227.632 kb on - strand, within GFF2178 at 227.671 kb on + strand, within GFF2178 at 227.789 kb on + strand, within GFF2178 at 227.789 kb on + strand, within GFF2178 at 227.790 kb on - strand at 227.818 kb on + strand at 227.818 kb on + strand at 227.819 kb on - strand at 227.819 kb on - strand at 227.819 kb on - strand at 227.819 kb on - strand at 227.819 kb on - strand at 227.819 kb on - strand at 227.819 kb on - strand at 227.819 kb on - strand at 227.819 kb on - strand at 227.819 kb on - strand at 227.819 kb on - strand at 227.819 kb on - strand at 227.823 kb on + strand at 227.823 kb on + strand at 227.823 kb on + strand at 227.823 kb on + strand at 227.823 kb on + strand at 227.824 kb on - strand at 227.824 kb on - strand at 227.824 kb on - strand at 227.824 kb on - strand at 227.824 kb on - strand at 227.824 kb on - strand at 227.824 kb on - strand at 227.824 kb on - strand at 227.824 kb on - strand at 227.827 kb on + strand at 227.827 kb on + strand at 227.827 kb on - strand at 227.828 kb on - strand at 227.828 kb on - strand at 227.828 kb on - strand at 227.834 kb on + strand at 227.834 kb on + strand at 227.834 kb on + strand at 227.861 kb on + strand at 227.862 kb on - strand at 227.870 kb on + strand at 227.870 kb on + strand at 227.871 kb on - strand at 227.871 kb on - strand at 227.904 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 225,037 - GFF2175 0.37 -1.1 225,152 + GFF2175 0.45 -1.1 225,208 - GFF2175 0.50 -1.6 225,208 - GFF2175 0.50 -2.1 225,208 - GFF2175 0.50 -1.4 225,254 + GFF2175 0.53 -0.6 225,255 - GFF2175 0.53 -1.1 225,315 + GFF2175 0.58 -1.1 225,450 - GFF2175 0.68 -0.1 225,542 - GFF2175 0.75 -1.1 225,550 - GFF2175 0.75 -1.1 225,552 + GFF2175 0.76 -1.4 225,553 - GFF2175 0.76 -1.1 225,553 - GFF2175 0.76 -1.1 225,553 - GFF2175 0.76 -1.1 225,848 + -1.1 225,860 + -1.2 225,861 - -1.1 225,893 + +0.5 225,893 + -0.1 225,894 - +0.9 225,894 - -0.1 225,898 + -2.5 225,899 - -0.1 225,899 - +0.1 225,934 + -1.3 225,935 - -0.9 225,935 - -0.2 225,971 - -1.2 225,971 - -3.1 226,035 - GFF2176 0.10 -0.4 226,064 - GFF2176 0.13 -1.4 226,064 - GFF2176 0.13 -0.1 226,064 - GFF2176 0.13 -3.1 226,064 - GFF2176 0.13 -1.4 226,103 - GFF2176 0.17 -1.2 226,103 - GFF2176 0.17 -1.1 226,103 - GFF2176 0.17 -2.0 226,103 - GFF2176 0.17 -0.9 226,223 - GFF2176 0.30 -1.1 226,292 - GFF2176 0.37 -2.5 226,292 - GFF2176 0.37 -0.5 226,317 - GFF2176 0.39 -2.1 226,508 - GFF2176 0.59 -1.4 226,508 - GFF2176 0.59 -1.4 226,508 - GFF2176 0.59 -0.4 226,978 - GFF2177 0.12 -1.3 227,048 - GFF2177 0.24 -2.5 227,048 - GFF2177 0.24 +0.5 227,060 - GFF2177 0.26 -0.4 227,060 - GFF2177 0.26 -1.6 227,082 - GFF2177 0.29 -1.4 227,135 - GFF2177 0.38 -2.1 227,135 - GFF2177 0.38 -0.1 227,135 - GFF2177 0.38 -3.2 227,139 - GFF2177 0.38 -2.1 227,139 - GFF2177 0.38 -0.8 227,139 - GFF2177 0.38 -0.1 227,139 - GFF2177 0.38 -0.9 227,197 + GFF2177 0.48 -1.4 227,198 - GFF2177 0.48 -1.1 227,270 + GFF2177 0.60 -1.0 227,270 + GFF2177 0.60 -0.6 227,270 + GFF2177 0.60 -0.4 227,271 - GFF2177 0.60 -1.5 227,274 + GFF2177 0.60 -1.6 227,298 - GFF2177 0.64 -0.3 227,298 - GFF2177 0.64 -2.2 227,298 - GFF2177 0.64 -1.6 227,298 - GFF2177 0.64 -1.2 227,320 + GFF2177 0.68 -1.6 227,382 + GFF2177 0.78 -2.1 227,383 - GFF2177 0.78 -1.1 227,384 + GFF2177 0.78 -1.7 227,385 - GFF2177 0.78 -2.4 227,424 + GFF2177 0.85 -1.9 227,425 - GFF2177 0.85 -1.3 227,447 + GFF2177 0.88 -2.2 227,447 + GFF2177 0.88 -2.3 227,447 + GFF2177 0.88 -1.3 227,447 + GFF2177 0.88 -1.1 227,448 - GFF2177 0.89 -3.2 227,448 - GFF2177 0.89 -1.6 227,448 - GFF2177 0.89 -0.6 227,477 + -1.1 227,477 + -1.2 227,533 - +0.5 227,533 - -1.5 227,534 + -1.3 227,535 - -1.1 227,535 - -1.1 227,535 - -1.4 227,535 - -0.1 227,575 - GFF2178 0.15 -0.4 227,578 + GFF2178 0.16 -0.9 227,578 + GFF2178 0.16 -1.6 227,578 + GFF2178 0.16 -2.1 227,578 + GFF2178 0.16 -1.7 227,578 + GFF2178 0.16 -1.4 227,578 + GFF2178 0.16 -1.1 227,579 - GFF2178 0.17 -1.6 227,579 - GFF2178 0.17 +1.2 227,579 - GFF2178 0.17 -2.8 227,607 + GFF2178 0.26 -1.4 227,607 + GFF2178 0.26 -1.2 227,607 + GFF2178 0.26 -1.9 227,608 - GFF2178 0.27 -1.8 227,608 - GFF2178 0.27 -1.3 227,632 - GFF2178 0.35 -0.1 227,671 + GFF2178 0.49 -1.9 227,789 + GFF2178 0.90 -1.4 227,789 + GFF2178 0.90 -0.4 227,790 - +0.5 227,818 + -0.6 227,818 + -1.1 227,819 - -0.8 227,819 - -1.2 227,819 - -0.7 227,819 - -1.4 227,819 - -1.1 227,819 - -0.8 227,819 - -1.0 227,819 - -2.2 227,819 - -2.1 227,819 - -2.6 227,819 - +0.6 227,819 - -0.1 227,823 + -1.5 227,823 + -1.9 227,823 + -0.8 227,823 + -2.2 227,823 + -1.2 227,824 - -1.1 227,824 - -0.8 227,824 - +0.6 227,824 - -1.9 227,824 - +0.2 227,824 - -0.2 227,824 - -0.6 227,824 - -1.0 227,824 - -1.2 227,827 + -1.3 227,827 + -0.3 227,827 - +0.4 227,828 - +0.5 227,828 - +0.3 227,828 - -0.6 227,834 + -1.9 227,834 + -0.6 227,834 + -1.5 227,861 + -0.7 227,862 - -0.7 227,870 + +0.8 227,870 + +1.8 227,871 - -0.3 227,871 - -1.1 227,904 + -0.6
Or see this region's nucleotide sequence